SRS11027078 SAMN23018782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210490775/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.70897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.258623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.7562065 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027077 SAMN23018842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476270/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.722298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 32.027008 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 32.6497 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027076 SAMN23018787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210477476/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.521742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.546602 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.395071 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027075 SAMN23018040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476272/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.227316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.115025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.092173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027074 SAMN23018841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476271/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.097481 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.539303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.334551 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027073 SAMN23015364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476290/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.889446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.646422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.055795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027061 SAMN23015701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476224/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.166428 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 32.78346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.497314 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027062 SAMN23018262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210476217/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.87204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.84423 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027063 SAMN23017326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476215/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.603716 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.09461 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.589304 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027064 SAMN23017011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210476179/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.884246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.897859 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.449645 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027065 SAMN23019237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476226/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.30085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.72378 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.900566 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027066 SAMN23017907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476232/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 33.010006 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 33.04189 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027067 SAMN23017329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476180/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.438114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.319944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.999806 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027068 SAMN23017328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476183/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 34.71922 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 32.8744 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027069 SAMN23015700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476258/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.130997 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.474762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.40842 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027070 SAMN23016105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476254/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.228943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.554855 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027071 SAMN23018382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476257/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.020813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 33.01635 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027072 SAMN23017325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476268/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.64012 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 33.624268 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 32.026356 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027079 SAMN23016083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210477489/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.602842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.632603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.031221 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027080 SAMN23018783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210490774/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.499569 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.987016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.538489 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027081 SAMN23018522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210307648/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.140684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.520557 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.122715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027082 SAMN23015924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210343655/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.346212 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.331453 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.299229 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027083 SAMN23018780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210343672/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.117308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.476372 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.826933 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027084 SAMN23019391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210307650/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.497942 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.535568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.621164 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027085 SAMN23015866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210470736/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.8728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.723137 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.702368 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027086 SAMN23015987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470740/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.709854 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.026402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.574133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027087 SAMN23015988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470737/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.370003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.87199 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.26281 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027088 SAMN23018300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210470741/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.81179 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.375972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.424428 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027089 SAMN23018781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210490776/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.397034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.912779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.830305 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027090 SAMN23019333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210470739/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.230698 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.45859 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.301561 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027091 SAMN23015865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210470744/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.426478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.908688 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.7427435 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027092 SAMN23018534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210470743/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.021345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.718014 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.682398 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027093 SAMN23017076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210470747/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.976992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.539883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.619781 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027094 SAMN23016059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210470746/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.217165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.370567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.976362 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027095 SAMN23015986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470745/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.164926 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.096648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.215875 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027096 SAMN23016991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210470750/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.686295 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.589176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.71067 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027097 SAMN23015985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470749/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.881863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.945293 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.783417 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027098 SAMN23017996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210470752/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.255949 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.554457 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.627748 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027099 SAMN23018533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210470748/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.477833 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.644112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.39844 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027100 SAMN23016990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210470753/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.852335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.431599 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.195006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027101 SAMN23016904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210470755/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.606354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.293243 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.177139 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027102 SAMN23015984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470756/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.211771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.649137 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.244566 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027103 SAMN23015273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210470731/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.252607 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.909039 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.56233 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027104 SAMN23015499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210470732/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.721764 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.91207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.306795 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027105 SAMN23018299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210470758/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.246214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.619442 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.165741 lineage/clade name B.1.335 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027106 SAMN23015982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470759/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.72125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.279154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.479749 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027107 SAMN23015272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210470733/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.233839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.649096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.337345 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027108 SAMN23015983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470757/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.085277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.542199 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.62414 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027109 SAMN23019420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210470761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.664713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.249119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.580713 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027110 SAMN23017616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210470762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.774761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.24649 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.924698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027111 SAMN23015981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470763/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.631865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.001824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.993393 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027112 SAMN23015979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470766/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.59324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.622726 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.65723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027113 SAMN23015980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470765/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.273277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.297836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.913976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027114 SAMN23016800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210470767/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.854843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.286167 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.314713 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027115 SAMN23018298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210470769/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.227341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.839833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.531729 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027116 SAMN23015977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470772/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.83386 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.805063 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.333603 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027117 SAMN23015978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470768/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.920778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.93095 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.738167 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027118 SAMN23015652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210471673/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.850945 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.80422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.245335 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027119 SAMN23019328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210471674/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.625375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.554192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.275296 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027120 SAMN23016848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210471676/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.465536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.57224 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.537117 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027121 SAMN23016190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471677/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.276808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.491764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.68796 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027122 SAMN23015490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471675/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.807568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.665455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.459797 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027123 SAMN23019078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471656/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.426292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.55611 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.33692 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027124 SAMN23016189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471678/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.656666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.069729 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.393265 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027125 SAMN23019331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210471658/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.165574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.838266 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.089184 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027126 SAMN23019077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471657/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.787262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.287163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.975502 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027127 SAMN23019076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471659/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.3081 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.256077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.361832 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027128 SAMN23019326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210471682/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.787402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.6052265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.319265 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027129 SAMN23019419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210471660/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.4862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.980073 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.888034 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027130 SAMN23019325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210471684/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.16582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.833795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.173837 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027131 SAMN23017223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210471685/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.49775 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.242641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.812794 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027132 SAMN23015591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210471686/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.77208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.949786 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.163257 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027133 SAMN23015651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210471687/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.638748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.705631 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.377382 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027134 SAMN23015650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210471688/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.575846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.669167 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.024422 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027135 SAMN23016900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210471689/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.487822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.363377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.203161 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027136 SAMN23019072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471690/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.974235 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.089962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.407187 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027137 SAMN23019071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471691/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.450714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.767803 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.246492 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027138 SAMN23019070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471692/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.511917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.961906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.743189 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027139 SAMN23017847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210471693/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.71727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.494652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.754852 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027140 SAMN23015855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471694/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.105973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.240459 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.618787 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027141 SAMN23018716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471695/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.827507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.2611 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.890953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027142 SAMN23018715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471696/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.585773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.444651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.768979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027143 SAMN23017484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471697/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.264288 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.761282 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.440973 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027144 SAMN23017482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471699/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.809257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.857469 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.0963955 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027145 SAMN23016188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471679/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.487734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.78971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.783464 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027146 SAMN23017483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471698/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.443218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.697233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.58767 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027147 SAMN23019073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471680/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.426217 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.788606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.735448 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027148 SAMN23018142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471712/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.205439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.76702 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.633099 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027149 SAMN23019327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210471681/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.202919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.425303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.564152 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027150 SAMN23019031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472259/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.83382 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.178411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.612154 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027151 SAMN23019032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472258/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.361697 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.679014 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.195928 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027152 SAMN23017655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210472263/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.789007 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.876457 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.231182 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027153 SAMN23016627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210472261/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.968357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.802267 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.057453 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027154 SAMN23016412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210472265/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.390135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.170183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.654009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027155 SAMN23017656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210472262/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.273905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.547625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.671837 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027156 SAMN23016413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210472264/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.539862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.617195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.261993 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027157 SAMN23016035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210472268/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.80066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.158357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.638164 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027158 SAMN23016036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210472267/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.509161 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.674545 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.969704 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027159 SAMN23016037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210472266/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.628194 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.473855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.568766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027160 SAMN23015832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472272/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.6943855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.41711 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.635149 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027161 SAMN23016377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472273/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.948603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.923893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.90369 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027162 SAMN23015833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472246/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.473992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.768746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.501359 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027163 SAMN23018450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472247/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.1718025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.409876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.925712 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027164 SAMN23016376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472274/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.70413 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.755177 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.316708 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027165 SAMN23019030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472275/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.98403 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.879322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.183147 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027166 SAMN23019320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210472277/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.985489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.573994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.391003 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027167 SAMN23015831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472279/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.2925005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.236845 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.90463 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027168 SAMN23018286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210472429/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.542188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.518865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.484614 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027169 SAMN23017878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210472281/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.827885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.613039 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.432722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027170 SAMN23016174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472283/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.282036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.316076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.165308 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027171 SAMN23016503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472276/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.194414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.797576 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.479788 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027172 SAMN23017877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210472282/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.84053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.887737 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.868374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027173 SAMN23016173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472286/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.560026 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.473295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.366474 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027174 SAMN23018696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472284/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.361221 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.594233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.420015 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027175 SAMN23019029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472288/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.519455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.966742 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.005754 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027176 SAMN23018335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210472287/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.291283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.3368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.905338 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027177 SAMN23015966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210472435/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.312181 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.662237 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.808922 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027178 SAMN23018228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210472289/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.89688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.852182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.308578 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027179 SAMN23015961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210472440/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.338205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.295547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.767572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027180 SAMN23018227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210472290/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.859743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.472479 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.727482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027181 SAMN23018507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467336/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.480096 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.346262 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.23725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027182 SAMN23015459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472291/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.222088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.56439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.368969 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027183 SAMN23015531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467341/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.605282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.973314 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.732819 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027184 SAMN23017625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210467340/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.563976 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.67913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.818323 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027185 SAMN23015532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467337/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.729211 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.197231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.2537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027186 SAMN23018246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467342/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.31782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.145731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.733446 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027187 SAMN23018245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467343/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.19857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.790236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.364964 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027188 SAMN23015894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467346/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.518646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.32689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.283 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027189 SAMN23018244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467344/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.309536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.423056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.523174 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027190 SAMN23019144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467350/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.598905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.686054 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.93958 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027191 SAMN23018243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467345/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.007624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.757435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.28449 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027192 SAMN23016850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210467347/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.126083 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.65586 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027193 SAMN23017855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210467348/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.925891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.607622 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.545936 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027194 SAMN23015337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210467353/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.143671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.03348 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.90404 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027195 SAMN23017000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210467354/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.510791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.827791 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.876293 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027196 SAMN23017780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210467352/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.827055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.67738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.611475 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027197 SAMN23017551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467331/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.332443 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.931307 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.511999 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027198 SAMN23015336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210467355/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.612712 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.636933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.192829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027199 SAMN23017552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467330/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.597259 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.324765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.56052 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027200 SAMN23016232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467359/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.4550495 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.884638 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.636553 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027201 SAMN23017816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210467360/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.748293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.404795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.22565 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027202 SAMN23019143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467361/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.459524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.700527 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.291134 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027203 SAMN23017889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210467363/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.858774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.227685 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.765736 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027204 SAMN23016999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210467362/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.73262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.504059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.544924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027205 SAMN23018349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210467364/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.254815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.054657 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.595962 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027206 SAMN23018506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467365/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.378248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.262878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.838144 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027207 SAMN23017277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467367/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.188433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.567692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.606726 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027208 SAMN23018505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467366/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.037579 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.34112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.093428 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027209 SAMN23017274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467370/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.128283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.113388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.727257 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027210 SAMN23017273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467371/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.887889 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.805848 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.68656 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027211 SAMN23017275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467369/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.883645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.900608 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.933087 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027212 SAMN23017276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467368/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.69694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.414413 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.38071 lineage/clade name AY.29.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027213 SAMN23017747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210473060/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.782618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.273071 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.47561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027214 SAMN23016972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473061/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.525164 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.45136 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.304209 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027215 SAMN23019142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467372/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.857822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.767496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.283949 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027216 SAMN23019008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473063/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.774425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.645044 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.3777275 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027217 SAMN23016971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473062/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.319464 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.004399 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.568639 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027218 SAMN23015454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473059/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.84106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.526571 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.71063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027219 SAMN23015808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473040/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.37663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.476538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.201323 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027220 SAMN23016070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210473036/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.555393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.522049 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.409746 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027221 SAMN23016407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210473068/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.812935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.46625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.915575 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027222 SAMN23016408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210473067/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.779243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.641079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.388178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027223 SAMN23017437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473069/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.845915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.507245 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.8741 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027224 SAMN23017842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210473070/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.666501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.61915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.82274 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027225 SAMN23017196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473072/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.305339 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.65856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.373098 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027226 SAMN23019007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473071/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.350939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.542749 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.512441 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027227 SAMN23016969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473075/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.925531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.988108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.653458 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027228 SAMN23016490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473074/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.200659 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.531538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.646986 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027229 SAMN23016167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473076/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.568117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.510947 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.154107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027230 SAMN23016491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473073/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.947376 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.600567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.168726 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027231 SAMN23018442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473079/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.67909 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.557745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.9067545 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027232 SAMN23016165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473078/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.67359 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.139774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.172253 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027233 SAMN23016166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473077/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.21598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.33046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.1424 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027234 SAMN23019308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473080/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.44503 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.041863 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.764591 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027235 SAMN23018441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473081/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.884068 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.297207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.772451 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027236 SAMN23018440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473083/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.1989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.464344 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.170038 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027237 SAMN23018438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473085/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.775863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.920138 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.006103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027238 SAMN23018333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210473087/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.820574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.549181 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.562763 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027239 SAMN23018439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473084/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.994198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.991823 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.196846 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027240 SAMN23017953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473064/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.632715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.96174 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.263667 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027241 SAMN23016970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473065/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.625664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.743008 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.764726 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027242 SAMN23016968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473092/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.744142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.900223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.739137 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027243 SAMN23019006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473091/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.371218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.77648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.1668 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027244 SAMN23015807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473066/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.323027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.840704 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.61069 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027245 SAMN23015806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473094/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.672968 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.919224 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.458393 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027246 SAMN23015579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210473447/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.95271 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.496633 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.038938 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027247 SAMN23015577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210473449/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.612446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.95006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.331064 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027248 SAMN23015417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.587448 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.279829 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.337578 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027249 SAMN23018282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210473451/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.342878 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.661411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.242046 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027250 SAMN23018985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473477/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.803507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.009381 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.369839 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027251 SAMN23015578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210473448/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.308798 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.886454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.637167 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027252 SAMN23016363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210473452/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.23807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.681726 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.441587 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027253 SAMN23015795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.122162 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.912153 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.313131 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027254 SAMN23016362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210473453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.893934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.870846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.714409 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027255 SAMN23018982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473484/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.573499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.097176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.478603 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027256 SAMN23018212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473458/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.505133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.641266 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.72573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027257 SAMN23016158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.829128 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.89704 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.527222 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027258 SAMN23015416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.364413 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.70572 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.632752 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027259 SAMN23016157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.721153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.411064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.273457 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027260 SAMN23015421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473434/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.977034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.38145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.645187 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027261 SAMN23015420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473435/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.361378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.27722 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.953583 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027262 SAMN23015418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473437/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.668897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.815762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.550255 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027263 SAMN23018208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473467/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.392996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.852745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.610388 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027264 SAMN23015419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473436/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.795435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.144815 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.791803 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027265 SAMN23018210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473465/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.963549 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.566868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.779629 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027266 SAMN23018207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473468/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.08693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.345612 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.656485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027267 SAMN23018205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473470/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.139448 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.131819 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.292856 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027268 SAMN23018206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473469/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.051212 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.752867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.653013 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027269 SAMN23015414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473472/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.340175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.970387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.852419 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027270 SAMN23017838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210473474/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.217015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.671925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.358439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027271 SAMN23015794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473475/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.370106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.918856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.811872 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027272 SAMN23017839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210473473/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.27143 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.613823 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.762584 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027273 SAMN23019398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210473482/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.252785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.099478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.749983 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027274 SAMN23019397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210473483/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.770868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.682743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.34046 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027275 SAMN23018984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473478/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.989832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.673473 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.155325 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027276 SAMN23018983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473479/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.135057 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.56728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.907843 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027277 SAMN23017050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210474813/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.513401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.294129 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.858766 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027278 SAMN23018981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473485/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.430634 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.60015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.262957 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027279 SAMN23017049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210474814/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.200804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.277712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.84178 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027280 SAMN23018408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474947/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.480134 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.993076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.292882 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027281 SAMN23017728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474914/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.214631 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.428887 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.474353 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027282 SAMN23018411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474915/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.630041 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.112707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.507256 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027283 SAMN23016708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210474920/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.652895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.852707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.651318 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027284 SAMN23017048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210474917/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.818476 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.023224 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.271196 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027285 SAMN23016709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210474919/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.066347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.850408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.423761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027286 SAMN23017730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474790/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.189333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.99311 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.740849 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027287 SAMN23017045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210474927/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.634506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.266298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.067726 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027288 SAMN23016875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210474929/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.548313 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.299488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.988332 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027289 SAMN23016463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474958/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.563452 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.324902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.035542 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027290 SAMN23019266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474792/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.718357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.824114 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.576647 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027291 SAMN23018528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210474930/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.64146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.606411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.089611 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027292 SAMN23016874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210474931/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.422938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.439606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.919713 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027293 SAMN23018077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474934/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.306431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.169445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.45548 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027294 SAMN23018527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210474932/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.525663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.035677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.73137 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027295 SAMN23018196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210474936/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.733933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.657271 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.429223 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027296 SAMN23016461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474965/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.404322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.670356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.804078 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027297 SAMN23017831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210474938/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.580286 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.396352 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.57049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027298 SAMN23015752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474940/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.709204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.662714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.503038 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027299 SAMN23018409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474942/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.36097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.742662 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.759748 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027300 SAMN23018899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474970/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.18235 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.832679 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.31559 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027301 SAMN23016938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474945/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.502031 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.594168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.472086 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027302 SAMN23019411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210474946/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.676226 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.226513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.32429 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027303 SAMN23018903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474948/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.434366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.92225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.522455 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027304 SAMN23018625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474950/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.368452 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.529654 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.855051 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027305 SAMN23015381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474951/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.3953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.783525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.14736 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027306 SAMN23018542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210474943/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.788345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.835323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.300749 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027307 SAMN23016774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210474949/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.964157 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.42513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.46247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027308 SAMN23018624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474953/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.829168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.325191 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.135087 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027309 SAMN23018623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474954/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.701075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.77585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.014011 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027310 SAMN23018882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475290/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.326057 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.236496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.588173 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027311 SAMN23019261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475292/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.472542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.306454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.311268 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027312 SAMN23018883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475288/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.91316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.846922 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.43645 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027313 SAMN23018069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475294/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.789066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.777262 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.892393 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027314 SAMN23018070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475293/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.779626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.975079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.589533 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027315 SAMN23018071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475259/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.328333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.900932 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.924814 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027316 SAMN23018885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475260/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.4692545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.958809 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.541673 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027317 SAMN23018324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210475297/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.223076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.8204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.438883 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027318 SAMN23016259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210475298/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.627005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.539696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.657943 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027319 SAMN23016258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210475299/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.548433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.292534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.941374 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027320 SAMN23017145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475302/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.633695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.847832 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.626602 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027321 SAMN23015293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210475301/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.447563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.269234 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.83838 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027322 SAMN23016257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210475300/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.448217 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.922276 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.633368 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027323 SAMN23016403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210475303/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.63037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.613972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.465318 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027324 SAMN23016124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475304/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.335413 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.1876545 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.039966 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027325 SAMN23017826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210475305/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.424665 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.391624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.75935 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027326 SAMN23017715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475306/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.454239 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.856047 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.558044 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027327 SAMN23017714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475307/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.578362 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.289923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.228765 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027328 SAMN23018615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475308/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.005905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.859678 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.491589 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027329 SAMN23018614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475310/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.147752 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.198165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.694397 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027330 SAMN23018613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475311/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.120442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.354639 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.329069 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027331 SAMN23018880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475313/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.83405 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.451496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.35665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027332 SAMN23018881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475312/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.296328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.16012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.956871 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027333 SAMN23015734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475315/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.230019 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.413235 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.83982 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027334 SAMN23018879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475314/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.259546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.547583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.235413 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027335 SAMN23015733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475316/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.162368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.410934 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.6438265 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027336 SAMN23019426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210475317/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.135802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.179378 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.373888 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027337 SAMN23016125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475296/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.197088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.733646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.955961 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027338 SAMN23016768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475321/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.221601 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.915346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.946724 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027339 SAMN23017635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210475330/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.593002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.809921 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.542646 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027340 SAMN23018068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475295/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.785494 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.78483 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.396933 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027341 SAMN23017363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475331/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.062228 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.227905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.922106 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027342 SAMN23016695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210476295/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.413723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.951771 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.765011 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027343 SAMN23017324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476273/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.38559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.757677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.088781 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027344 SAMN23016104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476275/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.54155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.70465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.71607 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027345 SAMN23016571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476274/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.417282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.857677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.676752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027346 SAMN23018381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476278/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.217741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.636978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.474154 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027347 SAMN23016696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210476277/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.109302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.520083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.184783 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027348 SAMN23015365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476276/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.745199 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.756479 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.371125 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027349 SAMN23017323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476279/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.11779 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.753871 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.879875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027350 SAMN23016044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210476281/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.62726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.42079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.363806 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027351 SAMN23018838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476306/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.173616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.586744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.435635 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027352 SAMN23017122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476280/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.556852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.863745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.91905 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027353 SAMN23018840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476283/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.610651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.7286005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.976085 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027354 SAMN23019236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476282/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.513731 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.506796 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.88637 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027355 SAMN23017038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210476284/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.890904 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.643761 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.51893 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027356 SAMN23015930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210476312/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.562387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.438822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.69751 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027357 SAMN23016249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210476241/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.493073 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.943338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.58024 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027358 SAMN23018039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476285/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.397654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.571301 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.382156 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027359 SAMN23016106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476247/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.105352 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.642302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.236805 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027360 SAMN23018579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476251/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.28725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 32.759865 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027361 SAMN23018839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476288/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.417125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.721835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.910394 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027362 SAMN23018837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476318/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.220049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.997325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.708438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027363 SAMN23017320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476291/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.4975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.521248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.651993 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027364 SAMN23017321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476289/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.621212 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.841959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.711292 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027365 SAMN23019235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476292/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.254341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.513481 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.450289 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027366 SAMN23016754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476293/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.724018 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.569496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.110936 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027367 SAMN23017319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476296/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.113533 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.39224 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.1787 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027368 SAMN23016043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210476294/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.302242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.633955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.887069 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027369 SAMN23016570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476297/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.07419 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.576462 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.835794 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027370 SAMN23015697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476323/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.543476 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.514954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.372192 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027371 SAMN23015699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476298/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.971977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.330399 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.934978 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027372 SAMN23016753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476300/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.755201 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.39541 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.377002 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027373 SAMN23016431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210476299/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.56434 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.833967 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.984402 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027374 SAMN23016564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476505/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.939827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.846261 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.879667 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027375 SAMN23019223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476534/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.578336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.92262 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.973813 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027376 SAMN23018812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476536/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.153427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.480219 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.144347 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027377 SAMN23015681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476535/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.098165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.023629 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.972089 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027378 SAMN23018574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476539/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.779692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.65222 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.203905 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027379 SAMN23018020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476540/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.981989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.170017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.146921 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027380 SAMN23018809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476541/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.410166 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.223448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.381792 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027381 SAMN23016563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476543/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.475513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.3512 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.783773 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027382 SAMN23018808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476542/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.49617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.131222 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.467556 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027383 SAMN23017589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210476544/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.183145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.187865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.718451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027384 SAMN23016924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210476545/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.52495 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.458439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.914621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027385 SAMN23018807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476548/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.865398 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.425457 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.223976 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027386 SAMN23015569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210476546/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.15087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.289846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.638277 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027387 SAMN23015568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210476547/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.724421 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.906713 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.385438 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027388 SAMN23017897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476549/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.704735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.99596 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.295694 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027389 SAMN23017896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476550/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.919262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.425222 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.77802 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027390 SAMN23018371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476528/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.519682 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.567985 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.878237 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027391 SAMN23018022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476529/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.283083 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.714643 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.682316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027392 SAMN23018021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476530/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.451278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.65926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.514893 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027393 SAMN23018017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476577/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.829178 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.742325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.862991 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027394 SAMN23019225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476532/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.201561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.845477 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.405994 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027395 SAMN23017506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210468107/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.328606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.535866 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.954609 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027396 SAMN23017507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210468105/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.270783 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.983736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.850446 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027397 SAMN23016220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468135/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.977844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.716324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.75228 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027398 SAMN23017240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468108/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.937973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.190058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.71612 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027399 SAMN23017620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210468110/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.29859 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.630884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.590685 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027400 SAMN23016650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210468109/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.031446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.564542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.462642 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027401 SAMN23019339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210468111/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.26886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.616064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.127028 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027402 SAMN23016810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210468112/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.814503 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.769352 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.506115 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027403 SAMN23016809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210468114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.350718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.375486 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.814661 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027404 SAMN23019337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210468115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.824722 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.922056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.8991375 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027405 SAMN23019338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210468113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.588036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.76848 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.020163 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027406 SAMN23017248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468096/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.980053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.57419 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.65969 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027407 SAMN23018343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210468095/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.6702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.358294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.783772 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027408 SAMN23019336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210468118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.490995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.759245 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.342617 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027409 SAMN23018154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210468093/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.898847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.697748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.371211 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027410 SAMN23016080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210468123/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.048197 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.838446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.005701 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027411 SAMN23017239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468126/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source NP Swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.731165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.404905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.560732 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027412 SAMN23016079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210468125/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.966689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.561632 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.430184 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027413 SAMN23017238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468128/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source NP Swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.474678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.215214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.887737 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027414 SAMN23019335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210468129/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.5677886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.75507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.2079 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027415 SAMN23019403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210468131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.860612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.30069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.695001 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027416 SAMN23018491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.919666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.550383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.21973 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027417 SAMN23016808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210468134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.429516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.661814 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.723698 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027418 SAMN23018490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468133/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.150365 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.616833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.501709 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027419 SAMN23018489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.807842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.413742 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.326949 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027420 SAMN23016368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210473095/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.688658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.715988 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.177698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027421 SAMN23019003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473099/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.968828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.340878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.936646 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027422 SAMN23018332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210473101/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.501484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.948666 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.365252 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027423 SAMN23017061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210473102/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.591263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.781355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.290562 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027424 SAMN23019005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473096/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.952548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.190518 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8701935 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027425 SAMN23019004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473097/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.240103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.926714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.477793 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027426 SAMN23017609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210473103/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.670084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.315338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.53611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027427 SAMN23019413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210473104/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.379371 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.350281 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.972785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027428 SAMN23017060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210473105/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.120522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.919015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.493563 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027429 SAMN23018673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473107/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.248516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.888979 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.312387 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027430 SAMN23019002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473106/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.22901 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.317183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.767467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027431 SAMN23018672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473108/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.507684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.300916 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.566935 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027433 SAMN23018111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473111/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.180188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.240796 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.499316 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027434 SAMN23016621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473112/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.957218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.162145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.85712 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027435 SAMN23016620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.513968 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.16925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.927008 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027436 SAMN23016489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.88021 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.553686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.560987 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027437 SAMN23016619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.643303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.227177 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.355225 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027438 SAMN23016164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473089/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.973618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.851328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.829802 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027439 SAMN23018437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.860507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.194576 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.174433 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027432 SAMN23018112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473110/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.826264 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.520064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.531184 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027440 SAMN23016967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473117/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.140845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.695638 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.130292 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027441 SAMN23016966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.510985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.591102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.616374 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027442 SAMN23017436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473121/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.415472 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.968142 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.330338 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027443 SAMN23018284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210473122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.478631 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.563692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.440471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027444 SAMN23017746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210473119/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.349066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.54366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.219684 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027445 SAMN23017195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473124/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.598544 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.547487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.343586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027446 SAMN23018283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210473123/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.678585 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.153547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.145311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027447 SAMN23017194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473125/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.423777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.538899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.254552 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027448 SAMN23015306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210473126/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.387648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.868318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.995727 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027449 SAMN23017435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473129/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.390487 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.730779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.304999 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027450 SAMN23018670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473128/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.661215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.988786 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.738895 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027451 SAMN23018671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473127/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.34488 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.406158 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.363697 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027452 SAMN23019234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476301/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.464315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.503597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.90368 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027453 SAMN23016430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210476302/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.992058 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.801705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.338755 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027454 SAMN23015698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476303/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.206654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.75242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.880658 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027455 SAMN23019424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210476307/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.827984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.106506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.598326 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027456 SAMN23019425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210476305/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.733608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.834276 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.59504 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027457 SAMN23018536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210476308/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.955448 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.92252 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.679245 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027458 SAMN23017906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476310/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.750187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.628883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.610711 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027459 SAMN23016675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210476311/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.796806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.291203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.98398 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027460 SAMN23015929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210476313/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.270632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.61056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.881758 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027461 SAMN23017322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476286/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.403755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.306919 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.085333 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027462 SAMN23015928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210476314/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.986959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.687952 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.126625 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027463 SAMN23016755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476287/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.151 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.353706 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.161945 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027464 SAMN23018836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476319/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.369444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.955656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.574007 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027465 SAMN23018834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476321/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.497126 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.554008 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.480871 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027466 SAMN23018835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476320/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.676144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.2827015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.519518 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027467 SAMN23019233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476324/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.461916 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.774103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.584362 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027468 SAMN23019232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476325/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.421478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.287088 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.804646 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027469 SAMN23018038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476322/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.522955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.344358 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.959949 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027470 SAMN23018825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476350/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.2852125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.180288 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.659147 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027471 SAMN23019231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476326/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.494709 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.417696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.384039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027472 SAMN23017694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476328/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.9748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.633228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.649845 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027473 SAMN23018833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476329/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.414825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.73924 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.516434 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027474 SAMN23019230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476327/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.658624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.469074 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.995522 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027475 SAMN23015553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WA-CDC-ASC210476355/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.215652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.500149 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.540586 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027476 SAMN23016752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476330/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.8717165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.97099 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.029883 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027477 SAMN23016751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476332/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.275305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.95839 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.362696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027478 SAMN23018832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476333/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.9941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.010987 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.351645 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027479 SAMN23018831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476334/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.242219 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.825103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.551573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027480 SAMN23017121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476335/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.461882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.763132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.581003 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027481 SAMN23017120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476336/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.49532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.272498 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.654826 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027482 SAMN23015695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476339/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.431753 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.542082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.370565 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027483 SAMN23015696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476338/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.81241 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.318391 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.738064 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027484 SAMN23016098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476568/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.44875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.939514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.937295 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027485 SAMN23016860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210476566/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.902699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.356344 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.035303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027486 SAMN23016099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476567/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.283789 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.597027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.347088 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027487 SAMN23015678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476570/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.267214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.396755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.498755 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027488 SAMN23015287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210476569/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.010275 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.592317 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.618013 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027489 SAMN23015677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476571/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.656988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.460085 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.983854 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027490 SAMN23015676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476572/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.800697 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.589422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.700159 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027491 SAMN23015286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210476573/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.437044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.250246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.322493 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027492 SAMN23017895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476551/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.927263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.366557 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.879923 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027493 SAMN23015285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210476574/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.351362 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.209715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.779309 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027494 SAMN23016097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476575/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.215298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.249054 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.72216 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027495 SAMN23018018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476576/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.708364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.3787 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027496 SAMN23015680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476552/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.684892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.0054455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.7200575 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027497 SAMN23017108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476582/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.633217 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.333063 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.975857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027498 SAMN23018370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476553/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.671396 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.864513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.907494 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027499 SAMN23017107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476583/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.427011 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.80362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.947537 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027500 SAMN23017009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210476584/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.925192 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.884583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.467594 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027501 SAMN23016749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476585/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.269575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.284628 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.296314 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027502 SAMN23018369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476587/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.474321 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.769348 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.655285 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027503 SAMN23016561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476588/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.943375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.663765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.652416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027504 SAMN23015355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476581/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.649836 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.277013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.220615 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027505 SAMN23016693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210476589/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.819223 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.973179 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.537378 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027506 SAMN23018573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476590/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.559366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.814406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.875868 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027507 SAMN23016692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210476591/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.36755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.792548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.731992 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027508 SAMN23016691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210476592/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.776686 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.361227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.559517 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027509 SAMN23017105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476690/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.206272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.573607 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.3802395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027510 SAMN23017106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476689/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.285095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.410407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.299911 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027511 SAMN23016748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476691/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.211273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.382284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.766163 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027512 SAMN23016747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476692/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.90478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.872144 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.589724 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027513 SAMN23017104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476701/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.522404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.37509 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.884804 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027514 SAMN23015675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476593/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.558859 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.75176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.733234 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027515 SAMN23018572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476688/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.259886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.104004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.574802 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027516 SAMN23019191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466723/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.645311 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.954979 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.761791 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027517 SAMN23019189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466726/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.773628 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.043098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.62597 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027518 SAMN23019190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466725/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.690716 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.127774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.826329 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027519 SAMN23017860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210466633/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.171111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.724565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.979436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027520 SAMN23017861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210466632/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.247324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.122793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.572018 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027521 SAMN23015279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210466736/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.66144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.903828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.903694 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027522 SAMN23018004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210466737/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.623556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.476465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.100016 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027523 SAMN23019185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466739/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.860248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.715566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.056833 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027524 SAMN23019186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466738/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.764002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.254085 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.067351 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027525 SAMN23015601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210466740/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.118734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.426281 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.926261 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027526 SAMN23019184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466741/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.547923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.2915745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.293975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027527 SAMN23015600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210466743/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.173068 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.278445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.143736 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027528 SAMN23015278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210466744/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.300765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.478431 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.930976 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027529 SAMN23015277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210466745/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.157588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.384729 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.742598 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027530 SAMN23015896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466746/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.013021 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.600271 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.49687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027531 SAMN23017564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210466749/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.269678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.432077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.47242 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027532 SAMN23015276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210466747/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.219499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.343907 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.467441 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027533 SAMN23015275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210466748/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.62234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.31379 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.695198 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027534 SAMN23016542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210466750/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.6917095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.232542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.2771 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027535 SAMN23017560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467044/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.820005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.268638 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.792025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027536 SAMN23017562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467042/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.743774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.58886 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.763218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027537 SAMN23017561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467043/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.530619 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.898891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.87655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027538 SAMN23019367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467045/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.75226 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.268843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.941121 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027539 SAMN23019366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467047/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.45569 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.050867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.161641 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027540 SAMN23019188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466727/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.34921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.809557 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.18103 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027541 SAMN23019187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466728/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.235743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.206758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.815351 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027542 SAMN23015339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210466729/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.714481 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.173721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.034695 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027543 SAMN23016666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467086/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.149849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.250862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.568027 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027544 SAMN23019363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467054/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.874977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.83639 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.184612 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027545 SAMN23019362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467055/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.702741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.356132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.483472 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027546 SAMN23017563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467041/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.2493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.29642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.008934 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027547 SAMN23019136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467412/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.20472 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.42275 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.868454 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027548 SAMN23019361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467056/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.94623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.627607 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.083479 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027549 SAMN23019135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467413/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.309085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.74241 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.318519 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027550 SAMN23019134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467414/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.71135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.016884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.880398 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027551 SAMN23019348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.718431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.39903 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.925266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027552 SAMN23019133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.333906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.903682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.593315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027553 SAMN23019349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467416/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.389372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.918829 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.370132 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027554 SAMN23019347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467418/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.139856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.726831 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.51489 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027555 SAMN23016662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.486025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.371426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.338314 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027556 SAMN23017549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.723375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.165274 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.889885 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027557 SAMN23017089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210467422/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.642263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.59612 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.74724 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027558 SAMN23017547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.177101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.956848 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.98994 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027559 SAMN23017548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467424/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.843717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.293879 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.714819 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027560 SAMN23016661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467421/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.78757 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.996843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.899933 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027561 SAMN23018767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.676723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.645697 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.832113 lineage/clade name B.1.459 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027562 SAMN23016419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210467428/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.590025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.889975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.802494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027563 SAMN23016420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210467427/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.893627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.901484 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.352781 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027564 SAMN23017545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467430/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.479082 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.856556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.509012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027565 SAMN23016729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210467408/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.37688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.72156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.936905 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027566 SAMN23017546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467429/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.990831 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.633343 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.674791 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027567 SAMN23016728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210467409/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.734508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.585852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.362583 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027568 SAMN23017854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210467434/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.427509 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.190041 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.614302 lineage/clade name AY.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027569 SAMN23016727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210467410/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.378828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.280695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.444921 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027570 SAMN23017544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467431/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.52907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.504778 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.558378 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027571 SAMN23017853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210467436/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.368515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.270044 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.806395 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027572 SAMN23015890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467437/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.695562 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.010832 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.349155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027573 SAMN23016533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210467438/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.277393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.278887 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.798451 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027574 SAMN23017543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467439/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.449392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.823715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.80275 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027575 SAMN23017542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467440/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.981552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.86258 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.649616 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027576 SAMN23017541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467441/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.325465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.53843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.2243395 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027577 SAMN23017270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.20384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.965739 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.68927 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027578 SAMN23017269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467444/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.424532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.353738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.583399 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027579 SAMN23018532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210470774/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.120033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.678543 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.553415 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027580 SAMN23016198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210470775/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.574268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.571064 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027581 SAMN23017779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210467442/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.899923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.475565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.22868 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027582 SAMN23017849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210470776/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.21825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.9982195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.451398 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027583 SAMN23018471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210470777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.555395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.303741 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.893915 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027584 SAMN23015976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470778/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.877464 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.702051 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.518604 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027585 SAMN23018727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210470780/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.392274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.317907 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.844973 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027586 SAMN23017227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210471086/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.471666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.76946 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.526276 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027587 SAMN23015864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471085/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.49972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.164947 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.006191 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027588 SAMN23018470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210471089/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.409076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.763633 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.10622 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027589 SAMN23017667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210471087/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.095411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.789185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.803436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027590 SAMN23019088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.659632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.020254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.119005 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027591 SAMN23015863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.63422 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.994334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.250117 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027592 SAMN23016039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210470760/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.267056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.0905285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.427275 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027593 SAMN23016197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471098/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.284485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.485321 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.24573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027594 SAMN23016526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471099/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.282958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.53298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.427216 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027595 SAMN23015861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471100/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.30137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.075247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.335417 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027596 SAMN23018297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210471101/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.124573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.120518 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.365677 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027597 SAMN23017772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471102/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.669907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.375944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.2662 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027598 SAMN23016525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471192/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.319314 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.688402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.767481 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027599 SAMN23015860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471193/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.4403 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.253508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.59898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027600 SAMN23016689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210471194/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.157935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.924151 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.552544 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027601 SAMN23019431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210471196/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.447645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.386234 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.633297 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027602 SAMN23019430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210471197/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.452986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.795129 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.857994 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027603 SAMN23015859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471198/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.587486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.120068 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.47813 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027604 SAMN23019432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210471195/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.760298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.778845 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.787987 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027605 SAMN23017771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471199/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.702024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.287106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.960636 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027606 SAMN23017770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471200/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.25223 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.483889 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.248833 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027607 SAMN23017497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471204/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.397219 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.911455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.683098 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027608 SAMN23017769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471201/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.512357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.603237 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.738574 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027609 SAMN23018726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.632935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.34872 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.252882 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027610 SAMN23017496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471205/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.985874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.832323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.656157 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027611 SAMN23015643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210472457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.355247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.288652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.253028 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027612 SAMN23017495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471206/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.252989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.543312 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.405216 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027613 SAMN23018695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472418/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.587183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.842882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.554617 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027614 SAMN23018694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.384201 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.367119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.990524 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027615 SAMN23018122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472463/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.962175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.258357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.704444 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027616 SAMN23016981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210472462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.946432 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.718798 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.158684 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027617 SAMN23016169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472465/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.202842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.825761 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.576526 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027618 SAMN23016980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210472470/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.166492 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.51861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.864988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027619 SAMN23019319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210472472/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.71149 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.059826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.490665 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027620 SAMN23019318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210472473/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.006187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.076899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.478718 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027621 SAMN23019317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210472475/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.476973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.65238 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.59037 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027622 SAMN23017446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472754/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.132782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.822027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.710777 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027623 SAMN23019028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472476/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.82466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.231384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.95383 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027624 SAMN23019026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472479/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.431502 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.527504 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.270021 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027625 SAMN23018226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210472480/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.28116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.027063 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.591858 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027626 SAMN23018225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210472481/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.978493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.808403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.475964 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027627 SAMN23018224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210472482/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.304976 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.996693 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.52574 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027628 SAMN23018222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210472484/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.290485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.1446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.964579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027629 SAMN23018121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472760/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.22462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.897478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.429913 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027630 SAMN23018689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472485/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.160425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.414223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.312696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027631 SAMN23018688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472486/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.795113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.158022 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.076381 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027632 SAMN23018687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472487/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.850798 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.444468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.440526 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027633 SAMN23015827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472765/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.564526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.206528 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.403589 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027634 SAMN23018685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472492/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.62382 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.5457325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.308793 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027635 SAMN23018686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472491/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.542183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.796217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.220255 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027636 SAMN23018684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472493/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.719513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.557846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.60926 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027637 SAMN23015585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210472495/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.355787 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.048764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.409785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027638 SAMN23016501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472497/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.597876 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.873274 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.4024 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027639 SAMN23017217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472458/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.844444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.237673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.966767 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027640 SAMN23018447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472498/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.903614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.626581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.119165 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027641 SAMN23018446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472499/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.894955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.911972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.663994 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027642 SAMN23017216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.468288 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.23519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.650417 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027643 SAMN23019025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472727/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.578268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.855108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.434616 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027644 SAMN23018488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.27963 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.318336 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.026234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027645 SAMN23016219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468140/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.401745 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.797083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.6748905 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027646 SAMN23016807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210468138/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.18556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.906748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.734192 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027647 SAMN23016218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468141/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.397724 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.219522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.29267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027648 SAMN23016217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468142/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.781711 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.397195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.199137 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027649 SAMN23016216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468143/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.306835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.764133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.121713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027650 SAMN23017619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210468144/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.769665 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.142359 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.637743 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027651 SAMN23017618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210468145/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.820293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.626263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.61192 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027652 SAMN23016909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210468146/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.595229 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.161133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.813197 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027653 SAMN23015511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210468120/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.66115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.799284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.789337 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027654 SAMN23016532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210468121/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.167486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.403316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.556366 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027655 SAMN23016531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210468122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.299856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.495651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.774338 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027656 SAMN23018001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210468150/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.979306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.290575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.844279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027657 SAMN23015508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210468151/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.867327 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.233553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.310358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027658 SAMN23016806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210468265/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.379005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.378431 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.200798 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027659 SAMN23015597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210468269/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.127208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.613635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.631823 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027660 SAMN23018000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210468266/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.52791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.48329 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.254378 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027661 SAMN23018487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468270/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.717144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.29222 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.358685 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027662 SAMN23016849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210468271/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.855366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 32.788822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.289892 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027663 SAMN23016061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210468272/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.5826845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.979203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.954844 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027664 SAMN23016060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210468273/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.938678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.505861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.4939995 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027665 SAMN23016391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210468275/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.277752 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.329279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.401657 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027666 SAMN23016390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210468276/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.170664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.607588 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.419228 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027667 SAMN23016389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210468277/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.911763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.727103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.3729105 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027668 SAMN23016388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210468278/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.94194 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.49758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.342432 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027669 SAMN23016387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210468279/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.583599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.575681 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.620188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027670 SAMN23016386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210468281/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.193094 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.47822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.116571 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027671 SAMN23017237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468282/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.658306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.332836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.29735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027672 SAMN23017505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210468286/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.693684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.801382 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.618223 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027673 SAMN23018486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468481/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.895247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.298915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.484329 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027674 SAMN23018555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210468482/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.626785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.578493 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.295153 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027675 SAMN23015510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210468147/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.696972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.592722 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.752526 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027676 SAMN23017995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471207/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.203957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.596542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.773159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027677 SAMN23016726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210471091/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.45847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.5548315 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.373557 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027678 SAMN23015862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471095/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.578642 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.696096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.17527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027679 SAMN23016644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210471097/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.14651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.512785 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.36 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027680 SAMN23018724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471210/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.267366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.725168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.64724 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027681 SAMN23016196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471214/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.827225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.634968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.411503 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027682 SAMN23016524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471215/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.540488 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.520991 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.701668 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027683 SAMN23018296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210471216/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.678692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.676336 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.279984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027684 SAMN23017993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471220/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.429636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.671122 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.92498 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027685 SAMN23018295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210471217/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.63363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.136233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.786868 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027686 SAMN23015858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471222/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.784761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.885553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.041695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027687 SAMN23017768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471224/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.12361 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.736675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.591864 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027688 SAMN23015498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471225/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.896112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.063772 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.302143 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027689 SAMN23016195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471226/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.507177 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.598553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.400738 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027690 SAMN23015657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210471227/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.696352 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.561663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.73087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027691 SAMN23015656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210471229/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.456047 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.948412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.376518 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027692 SAMN23015655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210471230/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.730963 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.424677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.744387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027693 SAMN23018723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471231/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.31854 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.316228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.795091 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027694 SAMN23018722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471232/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.740374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.766841 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.543092 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027695 SAMN23018721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471233/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.374947 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.422058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.803623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027696 SAMN23018151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471237/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.394133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.788002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.251818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027697 SAMN23017226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210471234/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.437574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.796298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.511271 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027698 SAMN23018150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471239/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.998205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.230932 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.844065 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027699 SAMN23018720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471240/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.603985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.647286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.177272 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027700 SAMN23017994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471208/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.243622 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.429762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.9833 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027701 SAMN23018725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471209/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.067697 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.439827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.292008 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027702 SAMN23016193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471521/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.401485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.900335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.931526 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027703 SAMN23016192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471522/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.331617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.285463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.185543 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027704 SAMN23016523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471525/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.020598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.365253 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.353465 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027705 SAMN23016191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471523/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.545525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.618326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.103206 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027706 SAMN23017992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471526/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.771254 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.290648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.4547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027707 SAMN23017991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471527/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.414684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.426498 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.82869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027708 SAMN23019418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210471713/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.794395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.469095 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.749216 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027709 SAMN23019417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210471714/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.827904 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.526968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.705282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027710 SAMN23015969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210471716/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.990673 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.80966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.590742 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027711 SAMN23015968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210471717/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.61063 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.734785 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.664667 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027712 SAMN23015967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210471718/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.433833 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.849198 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.219372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027713 SAMN23018141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471726/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.634641 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.463681 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.661675 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027714 SAMN23018713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471729/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.435932 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.783731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.388405 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027715 SAMN23018714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471727/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.599645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.504724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.502345 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027716 SAMN23018140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471730/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.131147 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.715582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.154904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027717 SAMN23016796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210471732/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.927656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.463001 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.497803 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027718 SAMN23016797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210471731/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.963474 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.704876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.529863 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027719 SAMN23017222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210471733/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.39864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.674095 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.971949 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027720 SAMN23017762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471735/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.337364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.628824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.83381 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027721 SAMN23017613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210471736/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.902745 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.2573185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.2171955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027722 SAMN23015489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471737/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.349 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.153574 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.489748 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027723 SAMN23015488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471738/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.237417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.502303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.359698 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027724 SAMN23015487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471739/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.489471 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.650196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.9244 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027725 SAMN23017481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471706/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.304935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.891205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.226469 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027726 SAMN23017480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471707/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.145695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.485498 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.320341 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027727 SAMN23015590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210471708/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.524081 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.194217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.005889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027728 SAMN23016798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210471710/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.13241 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.446692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.255854 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027729 SAMN23017884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210471711/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.59727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.94815 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.801598 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027730 SAMN23015485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471747/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.875165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.56331 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.29741 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027731 SAMN23017220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210471898/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.411741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.904684 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.523205 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027732 SAMN23018465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210471877/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.794584 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.775715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.675646 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027733 SAMN23019322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210471878/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.150995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.980493 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.395796 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027734 SAMN23015319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210471880/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.261263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.582485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.24098 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027735 SAMN23017881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210471883/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source NP Swab geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.269406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 7.8472033 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.494538 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027736 SAMN23017882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210471882/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.61596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.68179 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.046598 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027737 SAMN23015851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471853/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.385553 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.614028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.315638 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027738 SAMN23017883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210471881/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.92108 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.115087 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.225338 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027739 SAMN23017464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471854/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.060568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.899092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.526335 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027740 SAMN23018710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471857/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.170143 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.643032 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.294384 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027741 SAMN23018711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471856/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.203953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.40382 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.129206 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027742 SAMN23019069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471860/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.291382 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.50786 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.337255 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027743 SAMN23017880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210471884/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source NP Swab geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.886833 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.785386 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.896488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027744 SAMN23017879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210471885/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source NP Swab geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.637954 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.479437 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.303005 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027745 SAMN23018464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210471886/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.827277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.168036 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.532566 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027746 SAMN23018463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210471887/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.116528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.709997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.520523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027747 SAMN23016613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473412/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.327339 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.995445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.748201 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027748 SAMN23017418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473439/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.531878 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.487991 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.499191 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027749 SAMN23017651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210473413/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.797888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.989864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.805824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027750 SAMN23017650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210473414/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.556166 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.86203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.77776 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027751 SAMN23017649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210473415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.601385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.02411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.845762 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027752 SAMN23018428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473418/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.453941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.807561 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.655008 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027753 SAMN23015582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210473419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.287025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.363714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.003658 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027754 SAMN23016781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473421/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.498253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.417597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.383146 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027755 SAMN23016485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.811317 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.658646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.047974 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027756 SAMN23015581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210473420/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.1373005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.9270315 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.51748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027757 SAMN23019298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473424/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.129891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.726626 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.236246 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027758 SAMN23017022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210473425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.267517 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.577494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.782133 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027759 SAMN23015580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210473426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.658663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.49038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.261871 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027760 SAMN23016612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473428/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.962936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.20715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.917313 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027761 SAMN23016611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473429/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.428393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.001011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.781657 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027762 SAMN23016610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473431/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.197254 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.911417 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.347178 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027763 SAMN23016609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473432/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.817434 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.992098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.69571 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027764 SAMN23017058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210473456/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.987309 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.779535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.785091 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027765 SAMN23015422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473433/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.52918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.74572 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.993214 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027766 SAMN23017419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473406/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.526173 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.348488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.631071 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027767 SAMN23018431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473408/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.286495 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.631779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.458464 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027768 SAMN23017744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210473461/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.202833 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.734169 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.169141 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027769 SAMN23018430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473409/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.833576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.44422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.26418 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027770 SAMN23018429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473410/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.197088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.388744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.774463 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027771 SAMN23018427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473440/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.003902 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.524906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.222578 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027772 SAMN23017417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473441/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.498102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.5652485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.943711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027773 SAMN23018209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473466/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.34864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.22081 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.030355 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027774 SAMN23017416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473442/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.473425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.684673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.067657 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027775 SAMN23017415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.3795595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.378263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.286915 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027776 SAMN23017841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210473445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.041169 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.27 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.829924 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027777 SAMN23017840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210473446/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.6442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.383183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.736507 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027778 SAMN23015415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473471/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.656508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.184403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.957447 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027779 SAMN23015561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WA-CDC-ASC210467249/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.60136 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.242298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.16861 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027780 SAMN23016065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210467271/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.521957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.518648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.587413 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027781 SAMN23018509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467229/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.740994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.583273 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8649025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027782 SAMN23019422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210467231/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.81551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.314915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.65162 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027783 SAMN23015533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467232/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.324116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.423948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.501038 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027784 SAMN23016537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210467276/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.680808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.732304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.884381 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027785 SAMN23017280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467308/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.902075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.616579 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.505636 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027786 SAMN23017784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210467309/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.975275 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.81886 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.49341 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027787 SAMN23017783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210467310/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.395742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.699994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.345516 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027788 SAMN23017782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210467311/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.278543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.029855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.636966 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027789 SAMN23017553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467313/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.473843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.90623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.862298 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027790 SAMN23017002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210467314/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.705751 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.862818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.718428 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027791 SAMN23017001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210467315/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.927668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.426008 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.231752 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027792 SAMN23016536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210467316/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.449333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.136656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.698862 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027793 SAMN23017781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210467317/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.59499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.865622 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.497592 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027794 SAMN23019147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467318/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.854571 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.860159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.978064 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027795 SAMN23019146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467319/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.3684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.78314 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.70266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027796 SAMN23018350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210467320/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.592852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.581101 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.313163 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027797 SAMN23019145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467322/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.319791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.739874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.321512 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027798 SAMN23018163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210467324/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.820744 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.634508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.689566 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027799 SAMN23016818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467325/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.683058 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.097907 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.427284 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027800 SAMN23016817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467326/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.267456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.280811 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.057304 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027802 SAMN23018162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210467328/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.412048 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.0783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.997599 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027803 SAMN23016064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210467272/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.7774725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.065662 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.677596 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027804 SAMN23016663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467329/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.556915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.92367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.463198 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027805 SAMN23016538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210467273/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.478163 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.698828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.52071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027806 SAMN23016063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210467274/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.54769 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.400414 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.510756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027807 SAMN23017279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467332/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.957358 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.7135315 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.675657 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027808 SAMN23017278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467333/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.726849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.468635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.838665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027809 SAMN23018508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467334/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.272919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.62161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.348186 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027810 SAMN23016416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210467613/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.952869 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.792412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.935692 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027811 SAMN23016022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210467335/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.445377 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.373688 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.124607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027812 SAMN23019435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210467615/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.499792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.74469 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.307844 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027813 SAMN23016415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210467614/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.392994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.854673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.469501 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027814 SAMN23019434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210467617/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.410843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.291086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.064547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027815 SAMN23017888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210467619/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.255507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.889355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.80986 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027816 SAMN23019433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210467618/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.20559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.306935 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.881066 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027817 SAMN23015518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467620/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.414415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.854256 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.747501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027818 SAMN23018556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210467621/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.213192 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.57595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.805378 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027819 SAMN23018498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467622/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.016855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.899405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.44186 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027820 SAMN23018497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467623/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.302324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.240753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.300192 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027821 SAMN23015881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467624/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.18483 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.820621 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.527028 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027822 SAMN23019117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467625/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.598907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.186087 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.94868 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027823 SAMN23019116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467626/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.996897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.658978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.591293 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027801 SAMN23016816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467327/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.398028 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.742259 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.642528 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027824 SAMN23015516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467628/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.924057 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.55005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.48259 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027825 SAMN23015517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467627/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.65856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.760143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.699026 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027826 SAMN23019114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467630/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.178531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.593488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.9224825 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027827 SAMN23019113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467631/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.107677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.602583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.800253 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027828 SAMN23019115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467629/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.595095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.136415 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.25165 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027829 SAMN23019112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467632/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.126673 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.91408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.657465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027830 SAMN23015880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467633/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.953694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.77574 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.918208 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027831 SAMN23018346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210467611/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.299253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.900084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.397617 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027832 SAMN23016417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210467612/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.7213335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.392059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.313656 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027833 SAMN23019110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467640/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.366344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.93209 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.37568 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027834 SAMN23019111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467637/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.468052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.33753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.07548 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027835 SAMN23015514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467641/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.164034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.93147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.800207 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027836 SAMN23017257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467642/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.769392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.426249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.602503 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027837 SAMN23017256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467643/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.738916 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.161596 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.880249 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027838 SAMN23017255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467644/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.813229 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.989712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.326662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027839 SAMN23017254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467645/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.440077 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.563371 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.322 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027840 SAMN23018742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467646/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.92966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.396551 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.36003 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027841 SAMN23018241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467671/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.97865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.973904 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.202604 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027842 SAMN23019109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467647/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.994013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.907686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.21479 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027843 SAMN23017963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472974/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.739086 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.195156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.217035 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027844 SAMN23016371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472975/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.733599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.323574 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.282497 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027845 SAMN23016370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.167121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.7115135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.092235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027846 SAMN23015811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472920/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.716818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.334959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.027122 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027847 SAMN23018285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210472921/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.58818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.25902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.018372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027848 SAMN23018531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210472942/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.756607 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.679153 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.686441 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027849 SAMN23017199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472981/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.639606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.72806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.020123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027850 SAMN23017438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472982/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.232851 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.864638 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.1800785 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027851 SAMN23017751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210472983/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.755735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.663544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.495907 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027852 SAMN23017750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210472984/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.935514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.242619 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.825632 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027853 SAMN23017198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472986/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.191404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.063308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.050136 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027854 SAMN23017844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210472987/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.756569 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.367592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.307829 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027855 SAMN23019312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210472989/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.413398 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.348387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.613042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027856 SAMN23019017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472990/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.284161 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.134235 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.103817 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027857 SAMN23019311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210472991/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.230326 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.387684 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.714703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027858 SAMN23017962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472992/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.031998 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.401646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.235102 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027859 SAMN23017961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472993/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.313202 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.547184 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.203534 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027860 SAMN23017960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472994/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.41565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.497333 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.577919 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027861 SAMN23017959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472995/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.220217 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.745527 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.708124 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027862 SAMN23017958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472996/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.207678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.977007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.684471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027863 SAMN23017957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472997/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.976958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.196099 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.515718 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027864 SAMN23017956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472998/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.71178 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.683618 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.155564 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027865 SAMN23019016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473002/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.161892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.836271 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.185951 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027866 SAMN23016625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473001/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.8589 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.802465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.890972 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027867 SAMN23017749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210473003/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.962582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.609613 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.400988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027868 SAMN23016624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473006/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.130259 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.908758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.582085 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027869 SAMN23015307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472977/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.468732 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.472049 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027870 SAMN23016369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472978/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.876102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.711348 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.17725 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027871 SAMN23016073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210473011/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.646529 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.392624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.363348 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027872 SAMN23016072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210473012/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.815953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.152283 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.984176 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027873 SAMN23019310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473013/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.864195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.453502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.385643 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027874 SAMN23015809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473015/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.0951 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.36393 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.881575 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027875 SAMN23018940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474261/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.789066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.113409 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.769875 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027876 SAMN23015403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474263/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.878948 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.622046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.526318 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027877 SAMN23019288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474264/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.767284 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.754334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.814196 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027878 SAMN23015402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474266/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.109186 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.266617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.128906 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027879 SAMN23018939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474267/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.662111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.543543 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.84438 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027880 SAMN23018938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474268/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.481047 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.142012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.897789 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027881 SAMN23018937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474269/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.70804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.575201 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.623547 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027882 SAMN23019287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474270/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.449458 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.5364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.021327 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027883 SAMN23019286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474271/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.597906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.477676 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.365267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027884 SAMN23015401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474277/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.39441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.08536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.740135 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027885 SAMN23018936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474273/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.814175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.233385 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.720953 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027886 SAMN23016032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210474279/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.251247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.243598 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.739435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027887 SAMN23018647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474150/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.412624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.497436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.922848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027888 SAMN23018934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474283/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.257064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.27923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.70512 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027889 SAMN23018089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474284/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.908216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.2482395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.3460865 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027890 SAMN23015400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474290/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.373932 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.500175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.664639 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027891 SAMN23015398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474293/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.501795 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.869246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.033735 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027892 SAMN23015399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474292/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.419527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.66553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.35125 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027893 SAMN23015397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474294/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.126253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.989626 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.131856 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027894 SAMN23018646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474296/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.80977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.118427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.967164 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027895 SAMN23018645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474297/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.368757 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.720022 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.641275 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027896 SAMN23017392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474300/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.779308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.380747 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.876726 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027897 SAMN23018644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474298/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.147771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.472626 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.09212 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027898 SAMN23017391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474301/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.626463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.220644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.955744 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027899 SAMN23017055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210474303/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.948986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.778051 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.610626 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027900 SAMN23017178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474304/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.822327 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.57977 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.446619 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027901 SAMN23019395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210474307/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.561878 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.078328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8119 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027902 SAMN23017177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474308/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.97264 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.687922 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.347538 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027903 SAMN23019284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474309/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.908361 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.51598 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.358608 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027904 SAMN23019283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474310/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.14218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.333358 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.707634 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027905 SAMN23019282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474311/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.115582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.371796 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.184336 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027906 SAMN23016591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210474349/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.922855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.519324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.232165 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027907 SAMN23015619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210475112/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.847633 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.467798 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.961761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027908 SAMN23015379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475205/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.27782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.754389 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.761095 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027909 SAMN23019264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475207/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.801325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.309721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.821209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027910 SAMN23017370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475208/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.534956 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.58037 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.57629 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027911 SAMN23016586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475209/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 20 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.272987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.44948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.393452 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027912 SAMN23018618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475210/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.011508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.248134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.806914 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027913 SAMN23017599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210475212/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.52167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.371346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.390805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027914 SAMN23018617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475213/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.296867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.869063 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.942659 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027915 SAMN23017868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210475214/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.304355 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.9420595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.648315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027916 SAMN23015740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475215/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.229439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.978912 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.97449 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027917 SAMN23017369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475216/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.548557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.443707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.075144 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027918 SAMN23017636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210475244/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.243651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.007213 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.632479 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027919 SAMN23017924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475218/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.506763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.745985 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.724121 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027920 SAMN23018616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475219/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.503736 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.106705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.719839 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027921 SAMN23017598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210475221/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.281706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.664213 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.705664 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027922 SAMN23017829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210475222/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.413776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.546217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.630204 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027923 SAMN23016130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475249/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.226656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.046215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.657879 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027924 SAMN23018398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475223/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.564564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.813364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.988348 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027925 SAMN23017146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475224/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.602307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.5177555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.754225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027926 SAMN23017828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210475226/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.145191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.84781 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.15237 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027927 SAMN23017368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475227/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.27702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.87134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.5576315 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027928 SAMN23018397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475229/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.270273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.313322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.42001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027929 SAMN23016707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210475201/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.985763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.194751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.870937 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027930 SAMN23015380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.88065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.263811 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.124937 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027931 SAMN23016934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475204/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.190561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.94158 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.583622 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027932 SAMN23018887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475233/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.644832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.703436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.606331 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027933 SAMN23017718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475234/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.49211 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.43278 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.399433 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027934 SAMN23017367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475235/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.530021 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.831638 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.977853 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027935 SAMN23018396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475237/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.78092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.575787 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.163904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027936 SAMN23017717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475238/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.234821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.82161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.963288 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027937 SAMN23018395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475239/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.235317 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.622439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.220404 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027938 SAMN23018394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475241/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.386585 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.607975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.74727 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027939 SAMN23018048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476130/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.2445135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.429923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.86531 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027940 SAMN23018846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.85755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.946308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.293175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027941 SAMN23018845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476133/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.92779 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.01133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.045664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027942 SAMN23018844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.643679 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.692392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.597704 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027943 SAMN23017014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210476172/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.899705 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.519929 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.372963 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027944 SAMN23016250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210476135/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.448338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.403519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.959776 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027945 SAMN23015366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.436937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.31284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.261667 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027946 SAMN23018584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.701048 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.459536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.324488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027947 SAMN23016575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476103/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.687704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.311155 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.320324 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027948 SAMN23017012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210476178/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.000879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.708975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.243812 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027949 SAMN23016574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476104/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.97794 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.561325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.594072 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027950 SAMN23016573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476105/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.63455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.55352 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.581985 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027951 SAMN23018581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476140/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.300188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.882923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.201397 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027952 SAMN23018843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476144/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.647842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 34.37969 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027953 SAMN23015935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210476155/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.906699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.79787 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.605867 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027954 SAMN23016572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476156/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.582852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.176148 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.9877615 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027955 SAMN23017909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476158/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.523686 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.013129 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.32305 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027956 SAMN23017696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476159/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.13197 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.783201 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.559277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027957 SAMN23015934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210476160/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.836023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.525624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.915976 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027958 SAMN23015933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210476161/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.466796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.211302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.723802 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027959 SAMN23015704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476162/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.011326 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.186954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.787626 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027960 SAMN23015932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210476163/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.538097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.09998 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.80164 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027961 SAMN23016398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210476165/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.44847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.956034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.882938 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027962 SAMN23015931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210476164/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.947845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.375514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.9839735 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027963 SAMN23016434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210476166/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.17332 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.407724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.64047 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027964 SAMN23017331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476167/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.856466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.186379 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.298697 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027965 SAMN23017908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476168/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.613795 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.96331 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.822536 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027966 SAMN23016756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476170/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.660639 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.237091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.301294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027967 SAMN23017330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476173/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.903101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.085094 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.667692 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027968 SAMN23015703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476175/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.959688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.04218 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.994461 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027969 SAMN23016433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210476174/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.50828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.421219 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.690836 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027970 SAMN23017013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210476176/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.322617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.190084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.268505 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027971 SAMN23018789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210477279/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.813889 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.392228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.49455 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027972 SAMN23019220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210477266/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.480898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.945712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.625026 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027973 SAMN23019217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210490173/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.16286 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.207203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.519365 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027974 SAMN23016425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210477302/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.711605 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.536867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.512053 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027975 SAMN23016424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210477306/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.236559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.581759 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.983083 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027976 SAMN23016674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210477415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.953675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.304733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.777363 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027977 SAMN23016673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210477416/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.226892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.841879 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.516474 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027978 SAMN23018013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210490693/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.860248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.64596 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.226784 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027979 SAMN23019221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476980/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.95817 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.853012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.666748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027980 SAMN23015346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210477129/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.559559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.966997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.950823 lineage/clade name B.1.378 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027981 SAMN23015664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210477132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.938269 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.38471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.565708 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027982 SAMN23016853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210477492/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.182629 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.599783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.274875 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027983 SAMN23016917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210491540/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.735485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.269789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.44805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027984 SAMN23018560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210477520/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.192867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.573603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.189724 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027985 SAMN23015566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210477692/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.358175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.806753 lineage/clade name AY.46.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027986 SAMN23015280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210477694/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.097604 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.642186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.432966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027987 SAMN23016423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210477699/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.09971 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.20115 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.828306 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027988 SAMN23018786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210477702/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.964357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.594209 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.424033 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027989 SAMN23017034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210477918/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.598246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.174376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.313091 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027990 SAMN23018785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210477958/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.656545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.2282715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.733438 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027991 SAMN23018784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210477960/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.724115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.71065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.101421 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027992 SAMN23018363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210478016/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.904747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.712397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.36471 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027993 SAMN23017291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210489693/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.397915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.006378 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.682629 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027994 SAMN23017292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210489692/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.458425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.602585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.381039 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027995 SAMN23019218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210490172/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.662542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.552332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.979855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027996 SAMN23015342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210490644/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.24411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.709822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.49183 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027997 SAMN23017628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210490675/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.861866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.337528 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.70222 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027998 SAMN23018184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210490647/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.866955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.316095 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.438547 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11027999 SAMN23017683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210490686/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.176735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.038624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.99198 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028000 SAMN23016918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210490753/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.136372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.940775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.976465 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028001 SAMN23018788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210477475/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.72247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.259082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.864491 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028002 SAMN23015327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210470696/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.11743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.478409 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.629084 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028003 SAMN23019090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210470697/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.143234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.838995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.620413 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028004 SAMN23016078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210470699/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.033121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.787137 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.604727 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028005 SAMN23019402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210470700/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.881016 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.325743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.87069 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028006 SAMN23019089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210470701/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.82693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.972641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.503826 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028007 SAMN23019334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210470730/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.81341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.277327 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.889845 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028008 SAMN23017228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210470702/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.667336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.564162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.8132515 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028009 SAMN23016200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210470144/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.93211 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.423558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.981666 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028010 SAMN23017997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210470706/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.161392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.251163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.05173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028011 SAMN23018305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210470707/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.12763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.185673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.922523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028012 SAMN23015989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470735/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.83704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.34835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.196068 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028013 SAMN23015500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210470708/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.059475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.775875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.302737 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028014 SAMN23015565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VT-CDC-ASC210470709/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.32988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.201902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.752201 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028015 SAMN23015564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VT-CDC-ASC210470710/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.732828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.259491 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.825642 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028016 SAMN23017668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210470712/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.268988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.593342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.234137 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028017 SAMN23018304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210470713/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.102884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.919798 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.461752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028018 SAMN23016077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210470714/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.90857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.2350645 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.730678 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028019 SAMN23016906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210470717/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.869009 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.371466 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.413378 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028020 SAMN23016076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210470715/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.238267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.26825 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.567264 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028021 SAMN23018303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210470719/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.34726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.816595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.951002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028022 SAMN23018302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210470720/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.823793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.53172 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.220417 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028023 SAMN23018301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210470721/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.414996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.542578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.289141 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028024 SAMN23015991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470722/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.397239 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.12296 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.211721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028025 SAMN23016905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210470723/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.702994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.969826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.497216 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028026 SAMN23015658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210470724/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.503462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.264778 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028027 SAMN23018472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210470726/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.9245405 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.376963 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.990392 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028028 SAMN23015867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210470727/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.172327 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.101185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.734511 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028029 SAMN23016199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210470703/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.159595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.973513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.266281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028030 SAMN23015990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470728/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.561182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.673656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.20388 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028031 SAMN23016527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210470705/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.74736 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.559944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.72736 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028032 SAMN23015593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210470704/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.284779 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.320793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.260529 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028033 SAMN23015271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210470734/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.692399 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.536337 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.423006 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028034 SAMN23017663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210471605/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.54869 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.13952 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.733473 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028035 SAMN23018342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210471637/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.986003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.93105 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.350026 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028036 SAMN23016082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PR-CDC-ASC210471638/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.21552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.932346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.764013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028037 SAMN23019080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471639/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.33077 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.307305 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.8278885 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028038 SAMN23019079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471640/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.184935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.229279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.767729 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028039 SAMN23017976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471641/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.123127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.171741 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.726974 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028040 SAMN23017975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471642/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.872406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.336794 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.963829 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028041 SAMN23017974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471643/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.754873 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.509115 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.422042 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028042 SAMN23018144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471645/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.893082 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.325685 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.738225 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028043 SAMN23016902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210471644/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.684846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.04616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.624581 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028044 SAMN23018719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471646/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.607801 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.354446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.740915 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028045 SAMN23018718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471647/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.88415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.90213 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.777407 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028046 SAMN23018717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471648/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.778921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.190176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.42758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028047 SAMN23016519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471650/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.659103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.405184 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.231826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028048 SAMN23016518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471651/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.330608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.486576 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.255482 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028049 SAMN23016901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210471652/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.846115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.977257 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.172137 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028050 SAMN23018341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210471653/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.308187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.638075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.176897 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028051 SAMN23016075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210471654/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.234644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.659115 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.260155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028052 SAMN23015654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210471655/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.554802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.578289 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.351858 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028053 SAMN23016642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210471633/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.4184675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.402393 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.836235 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028054 SAMN23016903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210471635/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.154709 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.172376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.719096 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028055 SAMN23018467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210471661/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.629939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.3941145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.894057 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028056 SAMN23018143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471662/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.37956 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.45578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.31845 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028057 SAMN23016517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471663/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.436651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.576042 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.195364 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028058 SAMN23015653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210471664/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.5441065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.51267 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.411662 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028059 SAMN23019075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471665/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.175652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.702003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.884567 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028060 SAMN23017224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210471666/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.8776455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.838004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.298171 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028061 SAMN23019074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471667/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.810799 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.267826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.989481 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028062 SAMN23015320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210471668/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.253266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.876202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.745271 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028063 SAMN23019330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210471670/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.3909025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.78724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.571928 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028064 SAMN23019329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210471671/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.527865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.463405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.705984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028065 SAMN23018294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210471672/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.539072 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.099965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.788339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028066 SAMN23019351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467234/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.761847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.956485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.845914 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028067 SAMN23019154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467203/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.931117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.938353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.378815 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028068 SAMN23019350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467235/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.9614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.58772 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.462147 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028069 SAMN23019153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467205/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.988394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.929083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.537048 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028070 SAMN23017817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210467236/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.768694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.2418165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.639785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028071 SAMN23018771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467237/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.737024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.47387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.372383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028072 SAMN23018770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467238/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.380491 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.221254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.287601 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028073 SAMN23017891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210467239/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.879852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.952248 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028074 SAMN23017890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210467241/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.088399 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.4135895 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.232825 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028075 SAMN23017674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210467242/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.52654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.558775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.67813 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028076 SAMN23017673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210467243/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.720844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.189426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.100163 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028077 SAMN23016081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210467244/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.85428 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.8141165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.335085 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028078 SAMN23015274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210467245/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.76512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.729029 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.57608 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028079 SAMN23016915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210467246/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.620301 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.140672 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.874489 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028080 SAMN23017554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467247/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.77463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.203463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.892456 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028081 SAMN23015599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210467248/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.25609 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.115074 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.812576 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028082 SAMN23017192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473331/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.232953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.471539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.50633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028083 SAMN23018101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473334/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.409008 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.525093 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.196483 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028084 SAMN23018988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473335/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.982208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.992447 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.247948 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028085 SAMN23018102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473333/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.476995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.240324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.870024 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028086 SAMN23017426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473336/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.3260565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.759227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.771787 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028087 SAMN23018986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473340/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.225279 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.846258 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.036451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028088 SAMN23015798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473342/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.175636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.900787 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.423845 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028089 SAMN23018100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473345/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.311424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.136148 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.789537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028090 SAMN23015425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473346/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.977186 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.711746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.967955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028091 SAMN23016783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473350/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.739004 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.177088 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.962085 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028092 SAMN23016716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210473377/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.968224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.24489 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.1476 lineage/clade name B.1.335 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028093 SAMN23017191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473351/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.780827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.478606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.432642 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028094 SAMN23016786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473317/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.6314125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.597691 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.123067 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028095 SAMN23017188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473355/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.15338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.16085 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.410574 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028096 SAMN23017187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473356/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.545893 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.00276 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.899764 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028097 SAMN23016486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473357/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.544548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.53404 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.64115 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028098 SAMN23018432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473358/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.276306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.323573 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.852555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028099 SAMN23017946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473384/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.33392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.1379175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.487079 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028100 SAMN23015797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473360/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.618306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.924491 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.44246 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028101 SAMN23016963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473361/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.532839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.944738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.684612 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028102 SAMN23017424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473389/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.2026 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.95143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.728243 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028103 SAMN23018099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473363/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.198126 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.424261 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.182693 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028104 SAMN23018098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473364/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.701176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.572527 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.724941 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028105 SAMN23019299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473366/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.615755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.321818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.916347 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028106 SAMN23019399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210473367/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.275539 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.647476 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.800196 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028107 SAMN23016962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473368/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.632847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.775305 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.933176 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028108 SAMN23016782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473369/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.273298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.183084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.35856 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028109 SAMN23017745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210473370/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.836184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.44857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.4912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028110 SAMN23018667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473371/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.356737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.594635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.117851 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028111 SAMN23017875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210473372/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.562473 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.272102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.909245 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028112 SAMN23016959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473400/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.19843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.605614 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.492127 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028113 SAMN23017874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210473373/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.326689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.485083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.407341 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028114 SAMN23018547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210474646/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.34011 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.30004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.873362 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028115 SAMN23015762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474648/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.23801 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.017611 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.356758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028116 SAMN23018638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474649/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.814663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.839656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.613262 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028117 SAMN23018637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474650/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.813843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.488694 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.714921 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028118 SAMN23018636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474651/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.744932 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.261663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.801548 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028119 SAMN23017388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474652/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.297738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.98003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.24139 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028120 SAMN23017387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474653/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.666008 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.454789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.244641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028121 SAMN23017386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474656/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.981535 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.468102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.653563 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028122 SAMN23017933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474657/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.67883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.420801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.506304 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028123 SAMN23019268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474658/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.514664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.787899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.895397 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028124 SAMN23015387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474634/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.51016 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.979753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.372774 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028125 SAMN23015386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474635/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.934555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.985914 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.820061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028126 SAMN23018634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474664/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.677689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.354538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.28757 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028127 SAMN23015298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210474666/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.375788 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.145878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.613155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028128 SAMN23015297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210474667/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.892647 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.748891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.242609 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028129 SAMN23015761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474670/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.01793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.733236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.329903 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028130 SAMN23018200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210474675/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.029064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.923712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.226936 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028131 SAMN23018199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210474676/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.417624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.655088 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.458134 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028132 SAMN23018198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210474677/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.462101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.399591 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.778937 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028133 SAMN23016470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474679/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.593441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.73843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.691814 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028134 SAMN23016878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210474680/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.5206966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.227885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.68403 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028135 SAMN23018415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474683/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.426003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.96438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.186346 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028136 SAMN23018274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210474684/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.65916 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.967752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.52102 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028137 SAMN23016142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474687/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.190847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.879413 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.614935 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028138 SAMN23016778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210474689/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.686903 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.502922 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.528042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028139 SAMN23017736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474692/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.355897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.732784 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.189932 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028140 SAMN23017735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474693/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.548055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.412733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.889271 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028141 SAMN23018633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474694/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.370899 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.187861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.367884 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028142 SAMN23018632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474695/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.124027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.959691 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.463666 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028143 SAMN23018326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210474696/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.825965 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.209034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.355849 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028144 SAMN23017603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210474697/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.833845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.987518 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.14164 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028145 SAMN23017033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210474659/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.340149 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.215368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.634982 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028146 SAMN23016109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475955/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.908316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.502367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.323725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028147 SAMN23016108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475956/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.946719 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.775495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.632495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028148 SAMN23016576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475959/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.163315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.817108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.847883 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028149 SAMN23016577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475933/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.218165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.891319 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.32049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028150 SAMN23018851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475934/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.15551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.417252 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.352438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028151 SAMN23016107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475963/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.513726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.601883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.813679 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028152 SAMN23018593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475966/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.359484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.592325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.9629 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028153 SAMN23018594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475964/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.184946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.242458 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.671971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028154 SAMN23017339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475967/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.862299 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.130127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.469822 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028155 SAMN23018592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475968/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.631878 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.43884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.852537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028156 SAMN23018591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475970/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.463266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.211649 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.875813 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028157 SAMN23016926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475969/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.9382305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.557559 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.380893 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028158 SAMN23018590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475971/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.471028 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.232679 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.737607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028159 SAMN23017338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475972/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.821559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.311842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.001931 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028160 SAMN23017125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475973/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.743795 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.728424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.870163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028161 SAMN23016254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210475977/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.683493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.844202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.378885 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028162 SAMN23016253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210475978/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.216502 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.426168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.937944 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028163 SAMN23016252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210475979/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.733196 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.663263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.230747 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028164 SAMN23017124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475980/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.381086 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.536993 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.339325 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028165 SAMN23019240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475981/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.722454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.15577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.461798 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028166 SAMN23017699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475982/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.911414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.942336 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.330308 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028167 SAMN23015554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WA-CDC-ASC210475983/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.633212 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.283696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.181864 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028168 SAMN23017337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475984/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.555101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.721755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.8879175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028169 SAMN23015571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210475960/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.18258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.25828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.780577 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028170 SAMN23017340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475962/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.727776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.637965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.932329 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028171 SAMN23017631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210475961/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.213951 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.180562 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.780456 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028172 SAMN23018589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475987/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.986126 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.473202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.955864 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028173 SAMN23018050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475988/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.197462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.724728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.884322 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028174 SAMN23018849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476108/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.717905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.632324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.521074 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028175 SAMN23017698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475990/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.304808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.268131 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.052546 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028176 SAMN23018588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475989/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.955748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.035795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.57676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028177 SAMN23018189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210475991/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.986345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.7098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.823044 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028178 SAMN23017684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476928/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.210373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.906334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.068562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028179 SAMN23017863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210476929/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.113662 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.319059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.812991 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028180 SAMN23017093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476932/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.746262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.254593 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.251005 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028181 SAMN23018792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476930/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.128264 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.037677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.632293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028182 SAMN23015665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476933/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.653146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.368689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.28995 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028183 SAMN23017095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476873/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.713805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.117525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.549385 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028184 SAMN23016558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476874/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.836668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.488455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.061239 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028185 SAMN23019222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476934/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.395728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.497756 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.888759 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028186 SAMN23018366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476935/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.827738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.766136 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.41057 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028187 SAMN23018365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476936/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.339438 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.5116 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.62972 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028188 SAMN23016085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476937/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.967737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.787876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.720755 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028189 SAMN23018791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476970/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.977083 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.276161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.9225 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028190 SAMN23019405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210476964/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.488488 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.22768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.5014715 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028191 SAMN23016084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476938/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.895699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.016035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.683971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028192 SAMN23017893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476978/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.902426 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.542156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.184233 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028193 SAMN23018790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.485917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.360476 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.440248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028194 SAMN23017892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476979/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.311043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.191038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.264149 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028195 SAMN23015667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476912/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.327644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 32.032005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.109646 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028196 SAMN23017819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210477134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.377514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.025112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.89698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028197 SAMN23018367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476911/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.782608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 34.809776 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.983374 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028198 SAMN23015345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210477135/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.0718775 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.701275 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.367031 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028199 SAMN23015663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210477136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.512275 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.467332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.391966 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028200 SAMN23016393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210477137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.655165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.433033 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.294652 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028201 SAMN23018364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210477139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.886417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.665611 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.452423 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028202 SAMN23015344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210477142/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.707943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.53075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.39877 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028203 SAMN23015343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210477144/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.362505 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.30953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.263552 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028204 SAMN23017818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210477146/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.81257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.37631 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.836535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028205 SAMN23016920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210477152/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.092583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.548327 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.866204 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028206 SAMN23015265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210477153/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.714437 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.421835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.523011 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028207 SAMN23017008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210477205/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.227948 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.87659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.017333 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028208 SAMN23018313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210477216/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.232464 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.928822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.266163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028209 SAMN23016919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210477219/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.429268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.529152 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.538807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028210 SAMN23017617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210469960/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.371916 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.736464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.555319 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028211 SAMN23016202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468688/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.822975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.417221 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.581636 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028212 SAMN23016015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469968/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.801414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.198725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.64547 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028213 SAMN23016014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469969/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.408566 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.835674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.734907 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028214 SAMN23015999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470000/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.854778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.789564 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.205067 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028215 SAMN23016529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210469970/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.971053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.19691 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.027772 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028216 SAMN23018734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210469971/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.676867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.462813 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.138497 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028217 SAMN23016013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469974/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.726395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.756134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.691399 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028218 SAMN23016012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.479841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.835497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.641146 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028219 SAMN23016011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469977/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.942875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.621218 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.178864 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028220 SAMN23017234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210469978/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.347771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.453693 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.960997 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028221 SAMN23017233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210469979/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.394638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.96379 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.264842 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028222 SAMN23016008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469982/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.636097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.636618 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.616348 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028223 SAMN23016007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469983/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.861111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.913834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.40074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028224 SAMN23016010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469980/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.958497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.908725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.174468 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028225 SAMN23016006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469985/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.563824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.365904 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.583577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028226 SAMN23016005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469986/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.094446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.284414 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.50871 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028227 SAMN23017232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210469989/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.570184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.177663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.839333 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028228 SAMN23016002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469991/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.929188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.00046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.877153 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028229 SAMN23016003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469988/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.221945 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.612576 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.72653 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028230 SAMN23015503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210469992/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.254803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.238281 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.994865 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028231 SAMN23018735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210469961/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.706219 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.318118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.470642 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028232 SAMN23019092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210469963/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.194911 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.439189 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.453254 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028233 SAMN23017998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210469967/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.478384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.765131 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.596018 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028234 SAMN23017499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210469966/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.416527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.246206 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.925716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028235 SAMN23017079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210470001/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.292543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.54224 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.431677 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028236 SAMN23016000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469999/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.582207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.246284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.938511 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028237 SAMN23015998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470002/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.48384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.307592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.925334 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028238 SAMN23015997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470003/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.173699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.702223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.349725 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028239 SAMN23018731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210470005/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.565156 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.28054 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.168215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028240 SAMN23019091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210470007/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.57285 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.586446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.385663 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028241 SAMN23016882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210473789/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.415003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.429463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.263805 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028242 SAMN23015996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470006/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.131216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.795471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.711208 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028243 SAMN23015780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473790/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.634462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.679764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.369844 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028244 SAMN23015778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.13374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.944023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.733303 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028245 SAMN23017606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210474091/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.913279 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.92732 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.712888 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028246 SAMN23016946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.215885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.255985 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.347137 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028247 SAMN23015777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474092/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.863499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.94076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.587849 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028248 SAMN23015776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474093/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.441475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.7689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.60484 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028249 SAMN23015775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474094/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.629261 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.59876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.69693 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028250 SAMN23015955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210474095/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.449188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.010729 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.602294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028251 SAMN23018944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.256917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.0732 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.237071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028252 SAMN23017937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474097/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.256092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.395638 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.98521 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028253 SAMN23017936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474098/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.76719 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.399662 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.598074 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028254 SAMN23015774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474099/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.879395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.314787 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.982935 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028255 SAMN23016476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474100/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.351465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.190512 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.292463 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028256 SAMN23017393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474129/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.500345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.39514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.357203 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028257 SAMN23018946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474102/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.359009 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.261568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.402277 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028258 SAMN23015954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210474101/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.537193 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.753273 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.692755 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028259 SAMN23016952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474103/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.7673883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.7963505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.180117 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028260 SAMN23018422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474104/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.757686 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.221597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.37087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028261 SAMN23018650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.73682 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.122395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.559845 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028262 SAMN23016150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474105/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.575699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.993568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.938463 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028263 SAMN23016475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474106/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.63439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.443058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.667346 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028264 SAMN23018947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474087/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.16923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.27896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.832205 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028265 SAMN23016951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474107/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.210596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.981386 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.343435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028266 SAMN23018281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210474143/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.12534 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.2244005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.278467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028267 SAMN23016149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474109/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.487481 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.837227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.682976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028268 SAMN23017835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210474110/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.368336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.15071 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.545156 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028269 SAMN23016597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210474088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.61919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.90084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.526821 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028270 SAMN23017809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210474089/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.894269 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.274924 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.827061 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028271 SAMN23018943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474149/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.837229 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.665466 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.747645 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028272 SAMN23016948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.231596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.47111 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028273 SAMN23017932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474661/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.028732 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.959557 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.780724 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028274 SAMN23018635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474662/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.216941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.528368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.500545 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028275 SAMN23017930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474701/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.246431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.354336 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.552435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028276 SAMN23017734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474702/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.294814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.7204485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.373942 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028277 SAMN23017733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474703/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.560621 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.890451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.146921 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028278 SAMN23017732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474704/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.587493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.811726 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.812087 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028279 SAMN23017052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210474705/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.15831 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.52092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.533695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028280 SAMN23017643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210474706/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.399394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.559794 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.929964 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028281 SAMN23015384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474707/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.729486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.397078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.697933 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028282 SAMN23015383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474708/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.901511 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.686751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.498781 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028283 SAMN23015382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474709/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.337606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.321917 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.753609 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028284 SAMN23015296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210474710/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.575908 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.483823 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.798021 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028285 SAMN23015295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210474711/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.234484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.733112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.023438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028286 SAMN23017929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474712/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.290243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.70887 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.180693 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028287 SAMN23017927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474714/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.230638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.874857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.228394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028288 SAMN23017928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474713/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.754387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.054373 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.68551 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028289 SAMN23018546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210474716/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.983343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.025854 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.22579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028290 SAMN23019267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474715/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.872267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.654167 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.62846 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028291 SAMN23018414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474717/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.480397 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.418716 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.364583 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028292 SAMN23018413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474718/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.672873 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.506142 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.8600855 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028293 SAMN23017931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474700/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.660179 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.341532 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.820328 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028294 SAMN23017602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210474698/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.848574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.525269 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.965005 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028295 SAMN23016940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474719/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.948666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.2369 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.505178 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028296 SAMN23015760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474699/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.214527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.653344 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.63799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028297 SAMN23018544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210474725/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.739078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.756846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.854639 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028298 SAMN23018914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474727/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.417855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.5555725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.434268 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028299 SAMN23016710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210474729/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.317404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.650711 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.483797 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028300 SAMN23018913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474728/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.584465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.826204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.419752 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028301 SAMN23018912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474730/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.810158 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.696132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.855497 lineage/clade name AY.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028302 SAMN23017385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474731/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.056398 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.84107 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.572548 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028303 SAMN23017384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474732/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.401651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.51378 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.355038 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028304 SAMN23018631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474735/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.474957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.726705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.974764 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028305 SAMN23018857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475550/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.361032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.90621 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.311684 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028306 SAMN23019252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475553/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.813808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.89738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.627863 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028307 SAMN23017137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475551/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.520897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.5625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.217573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028308 SAMN23017136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475552/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.455708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.541025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.831253 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028309 SAMN23017135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475554/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.23576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.895003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.754763 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028310 SAMN23018524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210475526/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.383354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.413681 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.314479 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028311 SAMN23015728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475525/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.333885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.278347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.824905 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028312 SAMN23018387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475527/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.652653 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.543423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.648172 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028313 SAMN23016765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475557/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.339905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.820659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.716476 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028314 SAMN23016584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475560/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.632114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.732029 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.3577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028315 SAMN23016764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475558/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.383802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.57769 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.233992 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028316 SAMN23015726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475561/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.186979 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.236304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.446229 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028317 SAMN23016701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210475562/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.671291 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.531021 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.871742 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028318 SAMN23018856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475563/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.751982 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.671913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.859082 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028319 SAMN23018061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475566/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.85215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.390574 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.225895 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028320 SAMN23018386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475567/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.648966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.727449 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.273646 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028321 SAMN23018606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475568/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.68734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.247513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.083763 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028322 SAMN23015723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475569/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.535376 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.914385 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.644861 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028323 SAMN23018605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475570/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.489374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.757843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.340662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028324 SAMN23016700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210475571/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.54088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.264212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.389376 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028325 SAMN23016583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475575/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.135247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.606795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.990607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028326 SAMN23017867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210475573/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.950949 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.467101 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.242522 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028327 SAMN23018539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210475574/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.856928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.83458 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.851671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028328 SAMN23018855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475576/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.936531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.21377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.931705 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028329 SAMN23016870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210475577/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.990453 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.432667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.936636 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028330 SAMN23019250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475580/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.536255 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.747501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.70249 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028331 SAMN23016582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475579/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.793606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.192036 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.019318 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028332 SAMN23018267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210475581/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.542382 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.719103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.386137 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028333 SAMN23017086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210467547/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.309076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.482594 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.883123 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028334 SAMN23019251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475555/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.886055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.83722 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.321156 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028335 SAMN23017085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210467548/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.54572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.448917 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.864661 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028336 SAMN23016228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467549/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.593681 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.521217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.732876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028337 SAMN23016227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467550/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.994122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.613611 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.521584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028338 SAMN23017512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467573/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.831561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.786583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.072898 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028339 SAMN23017530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467551/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.31274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.871395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.427454 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028340 SAMN23017528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467553/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.560352 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.464851 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.412592 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028341 SAMN23017527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467554/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.767484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.613835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.412226 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028342 SAMN23017529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467552/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.593484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.943618 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.764695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028343 SAMN23016654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467578/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.440033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.785038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.86655 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028344 SAMN23017524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467557/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.502181 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.524133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.789023 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028345 SAMN23017526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467555/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.558852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.865424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.412497 lineage/clade name AY.32 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028346 SAMN23017525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467556/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.853546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.175522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.961645 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028347 SAMN23016659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467558/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.630604 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.725077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.913826 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028348 SAMN23017778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210467583/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.02725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.223787 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.731878 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028349 SAMN23018002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210467533/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.412851 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.737997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.177431 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028350 SAMN23019122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467535/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.631404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.316962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.253124 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028351 SAMN23019123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467534/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.967313 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.172714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.206855 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028352 SAMN23017522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467561/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.264372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.693249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.003903 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028353 SAMN23017521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467562/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.761265 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.361366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.390407 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028354 SAMN23017520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467563/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.296066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.82659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.31904 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028355 SAMN23017519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467564/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.65298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.699163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.788832 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028356 SAMN23017518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467565/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.095491 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.69963 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.59873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028357 SAMN23017517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467566/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.681544 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.948194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.770825 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028358 SAMN23017515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467570/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.792074 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.803159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.768139 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028359 SAMN23015883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467569/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.761287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.600311 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.329804 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028360 SAMN23017514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467571/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.141815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.583643 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.49902 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028361 SAMN23017516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467567/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.784227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.093557 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.957254 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028362 SAMN23016657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467575/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.784794 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.25759 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.34863 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028363 SAMN23017513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467572/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.482279 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.226475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.683039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028364 SAMN23017873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210473374/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.65988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.304352 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.057037 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028365 SAMN23018501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467574/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.696045 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.686714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.057196 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028366 SAMN23016656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467576/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.67336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.202345 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.872469 lineage/clade name AU.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028367 SAMN23015423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473376/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.628411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.295232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.957659 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028368 SAMN23017420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473405/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.429949 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.590548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.04927 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028369 SAMN23015424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473375/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.930393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.759737 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.301535 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028370 SAMN23019400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210473352/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.231642 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.821466 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.82501 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028371 SAMN23017189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473354/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.280298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.209986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.646245 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028372 SAMN23017190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473353/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.539641 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.6230955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.874674 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028373 SAMN23016614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473411/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.279917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.196789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.77154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028374 SAMN23017186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473383/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.937122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.636597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.315604 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028375 SAMN23017945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473385/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.30435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.746107 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.310314 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028376 SAMN23017944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473386/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.155456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.995028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.959049 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028377 SAMN23017059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210473387/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.207056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.629477 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.43241 lineage/clade name C.38 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028378 SAMN23017425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473388/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.143543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.978431 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.247066 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028379 SAMN23017648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210473416/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.650768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.114452 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.801777 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028380 SAMN23016367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210473390/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.870272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.013994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.428297 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028381 SAMN23016366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210473392/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.0039625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.749781 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.244578 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028382 SAMN23015558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WA-CDC-ASC210473391/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.88566 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.709036 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.724308 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028383 SAMN23015557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WA-CDC-ASC210473393/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.24898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.826012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.454304 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028384 SAMN23016159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473422/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.413456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.817173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.214891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028385 SAMN23016364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210473395/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.589996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.383783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.316 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028386 SAMN23016365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210473394/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.2111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.6817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.342887 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028387 SAMN23016961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473396/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.644994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.907082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.804864 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028388 SAMN23016160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473397/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.71363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.561946 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.574768 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028389 SAMN23016958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473427/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.757026 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.450693 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.205635 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028390 SAMN23016960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473399/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.567952 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.293787 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.748988 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028391 SAMN23016069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210473401/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.297571 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.26982 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.410889 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028392 SAMN23017423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473402/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.384676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.450832 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.419104 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028393 SAMN23017422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473403/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.19105 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.504519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.450644 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028394 SAMN23017421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473404/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.484392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.611765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.15092 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028395 SAMN23016714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210473379/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.656429 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.530353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.877361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028396 SAMN23016715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210473378/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.864748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.336805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.220159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028397 SAMN23015796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473382/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.410708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.833352 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.423891 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028398 SAMN23018663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473556/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.585229 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.786757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.913257 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028399 SAMN23018662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473557/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.014822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.589248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.520074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028400 SAMN23018661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473558/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.815805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.17923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.553497 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028401 SAMN23015411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473561/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.63708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.53531 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.520739 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028402 SAMN23018974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473562/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.194078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.369692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.837923 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028403 SAMN23019296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473563/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.826686 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.162824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.809448 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028404 SAMN23019295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473564/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.319572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.660494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.65883 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028405 SAMN23018657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473567/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.780462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.224928 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.8388 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028406 SAMN23018658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473566/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.856938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.9055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.110605 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028407 SAMN23018656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473568/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.909885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.717758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.555353 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028408 SAMN23018655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473569/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.941847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.785232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.620154 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028409 SAMN23017408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473545/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.566698 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.30806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.910616 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028410 SAMN23017407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473546/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.497255 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.27082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.126257 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028411 SAMN23017397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473578/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.34093 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.338755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.155533 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028412 SAMN23015791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473684/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.70009 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.64633 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.125431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028413 SAMN23018972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473686/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.963716 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.616671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.528385 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028414 SAMN23018970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473688/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.327619 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.089118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.546684 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028415 SAMN23018425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473685/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.856755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.821972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.702113 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028416 SAMN23015790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473691/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.563731 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.004002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.958057 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028417 SAMN23015789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473692/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.302805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.781641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.107042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028418 SAMN23018969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473693/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.890824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.184011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.12268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028419 SAMN23018968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473694/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.800146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.182446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.948496 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028420 SAMN23018967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473695/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.689869 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.140268 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.68909 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028421 SAMN23018966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473696/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.635637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.19891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.196999 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028422 SAMN23018965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473697/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.385282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.548578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.515375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028423 SAMN23017213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472728/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.659918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.276642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.9387245 lineage/clade name AY.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028424 SAMN23018683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472729/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.464457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.326084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.0252 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028425 SAMN23015641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210472748/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.040009 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.417435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.83397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028426 SAMN23016720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210472749/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.439041 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.310135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.722416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028427 SAMN23016892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210472752/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.798539 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.845402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.179232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028428 SAMN23017968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472750/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.245441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.760925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.41518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028429 SAMN23017445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472755/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.133068 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.202744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.780394 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028430 SAMN23018552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210472757/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.160084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.938862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.37767 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028431 SAMN23015829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472758/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.418935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.303986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.575361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028432 SAMN23018682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472759/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.147957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.976319 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.781689 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028433 SAMN23018120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.189688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.758028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.901918 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028434 SAMN23015828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.06084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.888954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.087852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028435 SAMN23016051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210472763/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.319252 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.4773035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.502352 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028436 SAMN23016979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210472764/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.818936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.796405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.340113 lineage/clade name AY.45 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028437 SAMN23017067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210472766/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.570287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.788816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.435675 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028438 SAMN23015584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210472767/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.95928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.56746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.23544 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028439 SAMN23016411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210472769/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.274408 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.217085 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.789312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028440 SAMN23016410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210472770/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.346369 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.532928 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.338222 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028441 SAMN23016978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210472771/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.997095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.530435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.699262 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028442 SAMN23017967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472772/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.4706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.349045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.968428 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028443 SAMN23018681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472773/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.56222 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.188612 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.75475 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028444 SAMN23016050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210472777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.65148 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.552628 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.907166 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028445 SAMN23017212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472778/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.617609 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.153553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.449913 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028446 SAMN23017752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210472779/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.334433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.278606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.876999 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028447 SAMN23015824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472780/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.3072815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.314255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.524244 lineage/clade name AY.40 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028448 SAMN23016891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210472782/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.128572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.54197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.048439 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028449 SAMN23016500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472783/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.460743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.605824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.648859 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028450 SAMN23016499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472784/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.403216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.581168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.627373 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028451 SAMN23016977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210472786/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.811027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.393737 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.121803 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028452 SAMN23015823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472787/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.389135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.803388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.806876 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028453 SAMN23015822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472788/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.219903 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.126014 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.920178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028454 SAMN23016976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210472789/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.974646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.710701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.738132 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028455 SAMN23017740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.923378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.440308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.892176 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028456 SAMN23018327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210474516/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.842281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.60588 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.115889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028457 SAMN23017739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474517/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.155922 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.47293 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.480114 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028458 SAMN23016261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210474518/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.79671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.896938 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.218338 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028459 SAMN23016260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210474519/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.240077 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.895237 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.673717 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028460 SAMN23015765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474522/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.007177 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.343291 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.198392 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028461 SAMN23018917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474523/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.795008 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.275858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.97057 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028462 SAMN23018082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474526/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.253097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.4317875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.94212 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028463 SAMN23018916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474524/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.846727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.11779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.191599 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028464 SAMN23017738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474527/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.576595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.197874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.133984 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028465 SAMN23015764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474525/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.192238 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.61513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.366827 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028466 SAMN23017737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474531/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.572033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.652246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.499144 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028467 SAMN23017389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474535/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.79081 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.83097 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.505981 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028468 SAMN23018081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474536/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.1236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.675827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.29774 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028469 SAMN23018416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474537/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.26578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.742546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.708864 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028470 SAMN23018915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474539/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.498692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.836315 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.136072 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028471 SAMN23015388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474633/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.014168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.947727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.606017 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028472 SAMN23015629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210474541/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.987748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.335121 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.869693 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028473 SAMN23015300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210474508/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.201506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.5811 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.448883 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028474 SAMN23016262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210474509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.013267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.80874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.110542 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028475 SAMN23015766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474510/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.527485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.068773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.968949 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028476 SAMN23015385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474636/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.968862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.310959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.809952 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028477 SAMN23015628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210474638/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.776747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.61156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.581598 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028478 SAMN23017162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474637/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.98374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.981353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.541111 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028479 SAMN23015627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210474639/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.53637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.443897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.217638 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028480 SAMN23015626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210474640/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.167034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.40871 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.857374 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028481 SAMN23016471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474671/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.483374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.71996 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.487947 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028482 SAMN23017934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474641/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.585103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.504101 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.096401 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028483 SAMN23018202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210474642/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.448841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.8231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.592327 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028484 SAMN23018201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210474643/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.35448 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.630318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.558298 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028485 SAMN23015763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474644/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.190771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.173763 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.408857 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028486 SAMN23018548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210474645/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.144005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.411192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.849289 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028487 SAMN23017143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475370/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.599013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.371686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.977723 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028488 SAMN23018876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475374/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.92766 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.690866 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.468334 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028489 SAMN23016767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475371/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.908401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.48109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.422047 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028490 SAMN23018067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475375/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.674608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.209526 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.865213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028491 SAMN23018066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475376/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.8180275 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.370633 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.956523 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028492 SAMN23018065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475377/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.355946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.143909 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.099344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028493 SAMN23016705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210475380/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.965296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.226927 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.486006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028494 SAMN23018874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475379/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.62926 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.956671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.360254 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028495 SAMN23015732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475381/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.409252 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.314041 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.186293 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028496 SAMN23016932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475382/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.645909 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.160292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.672234 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028497 SAMN23017142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475384/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.425695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.952248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.652375 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028498 SAMN23017031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210475354/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.89745 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.442281 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.711431 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028499 SAMN23018871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475388/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.292138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.827706 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.745504 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028500 SAMN23018870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475389/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.619495 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.368875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.512126 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028501 SAMN23015574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210475355/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.379601 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.629261 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.437223 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028503 SAMN23015617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210475408/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.314749 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.689767 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.271667 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028504 SAMN23015616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210475409/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.814498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.549701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.486037 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028505 SAMN23017634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210475412/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.91689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.340083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.775474 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028506 SAMN23017711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475410/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.844813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.989337 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.576822 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028507 SAMN23015731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.798643 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.3091755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.312724 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028508 SAMN23015950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475418/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.875883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.657965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.662598 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028509 SAMN23016704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210475417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.566734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.028053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.960083 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028510 SAMN23019259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475420/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.700904 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.162536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.780602 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028511 SAMN23019260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.988842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.371696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.723272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028512 SAMN23019257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.914273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.31226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.35386 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028513 SAMN23019256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475424/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.185707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.539482 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.085875 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028514 SAMN23019258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475422/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.888898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.287973 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.441913 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028515 SAMN23018610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.447641 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.124966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.25116 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028516 SAMN23018609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.512086 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.76888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.531238 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028517 SAMN23018608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475427/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.231691 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.139376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.735378 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028518 SAMN23018802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476736/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.47287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.195738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.9461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028519 SAMN23018015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476763/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.79499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.23764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.52259 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028520 SAMN23018570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476738/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.594664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.007542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.351116 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028521 SAMN23018607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475428/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.924889 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.270645 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.144102 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028522 SAMN23016746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476739/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.794655 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.919156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.194165 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028523 SAMN23016091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476740/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.131088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.431103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.873362 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028524 SAMN23015674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476742/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.168873 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.546867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.998941 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028528 SAMN23018258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210476768/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.002644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.1502075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.298665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028502 SAMN23018869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475390/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.854925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.688074 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.028027 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028525 SAMN23018569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476743/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.418575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.380365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.448246 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028526 SAMN23016090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476746/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.299602 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.284592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.24805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028527 SAMN23018523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210476744/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.208658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.751558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.448397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028529 SAMN23016857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210476773/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.287914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.412278 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.704029 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028530 SAMN23016089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476747/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.662818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.2983675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.864288 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028531 SAMN23015349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476748/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.700034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.431378 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.732859 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028532 SAMN23016394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210476751/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.365459 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.712798 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.986441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028533 SAMN23018568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476749/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.388051 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.459025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.332962 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028534 SAMN23015281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210476778/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.34522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.168472 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.7931185 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028535 SAMN23018801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476752/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.976288 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.033607 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.79093 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028536 SAMN23015673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476754/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.299799 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.169834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.848443 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028537 SAMN23017299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476755/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.76993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.891977 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.001576 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028538 SAMN23016093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476728/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.2597685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.198269 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.612704 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028539 SAMN23016092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476729/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.501257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.22456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.85277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028540 SAMN23016859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210476759/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.555773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.998604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.648237 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028541 SAMN23018016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476760/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.243755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.020542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.827168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028542 SAMN23017099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476784/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.269478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.151733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.001446 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028543 SAMN23018185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210476761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.765125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.668663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.618795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028544 SAMN23016858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210476762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.864756 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.759932 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.76671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028545 SAMN23016245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210476764/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.377499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.489525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.158262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028546 SAMN23018260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210476766/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.999786 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.76105 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.246051 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028547 SAMN23016744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476765/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.424229 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.395621 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.404004 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028548 SAMN23018259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210476767/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.228466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.78789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.27952 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028549 SAMN23016922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210476770/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.884172 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.406355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.849706 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028550 SAMN23018565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476769/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.82419 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.39089 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.868696 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028551 SAMN23016238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467103/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.241941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.821903 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.266283 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028552 SAMN23016421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210467104/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.635994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.61443 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.220089 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028553 SAMN23017677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210467105/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.072666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.199562 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.20979 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028554 SAMN23015542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467102/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.029127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.452015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.210943 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028555 SAMN23019170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.601162 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.180458 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.585705 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028556 SAMN23017676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210467106/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.373612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.925276 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.458505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028557 SAMN23018249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467111/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.715866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.259914 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.76454 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028558 SAMN23018248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.366344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.689775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.555649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028559 SAMN23017559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.599426 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.9171295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.500376 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028560 SAMN23017558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467116/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.398727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.732347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.787352 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028561 SAMN23018247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.187181 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.3787775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.191345 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028562 SAMN23017557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467117/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.745754 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.998043 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.321087 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028563 SAMN23016665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467087/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.509264 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.814741 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.239978 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028564 SAMN23019181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467121/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.660637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.417374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.92574 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028565 SAMN23019168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467164/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.23104 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.453926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.439222 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028566 SAMN23019180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.931974 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.950344 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.746262 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028567 SAMN23019178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467125/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.308588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.833717 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.4062 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028568 SAMN23019179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467124/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.166328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.02883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.865187 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028569 SAMN23019177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467126/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.61978 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.397705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.58035 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028570 SAMN23019176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467127/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.557508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.982967 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.63137 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028571 SAMN23019354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467169/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.919914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.608658 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.560373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028572 SAMN23019175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467128/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.852489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.049108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.141717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028573 SAMN23019173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467130/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.401334 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.853591 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.459471 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028574 SAMN23019171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.283947 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.402317 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.3926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028575 SAMN23019174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467129/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.364969 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.694422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.965602 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028576 SAMN23018351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210467134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.538747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.554302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.329337 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028577 SAMN23017856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210467133/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.149596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.935722 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.92104 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028578 SAMN23018557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210467136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.351463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.291275 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.149597 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028579 SAMN23016690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210467144/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.85282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.21727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.373394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028580 SAMN23016822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467145/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.354067 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.736538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.679325 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028581 SAMN23017785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210467138/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.855038 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.173805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.573444 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028582 SAMN23019358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467147/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.452511 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.010197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.771667 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028583 SAMN23016908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210468148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.935553 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.439413 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.933092 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028584 SAMN23015509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210468149/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.908436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.306056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.644306 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028585 SAMN23015507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210468489/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.571978 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.326248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.818464 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028586 SAMN23015874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210468490/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.2182045 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.308398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.160144 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028587 SAMN23015330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210468494/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.75103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.800496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.132524 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028588 SAMN23016805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210468502/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.125992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.285816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.799375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028589 SAMN23015329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210468496/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.355482 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.761883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.513801 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028590 SAMN23017236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468503/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.42297 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.90714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.588755 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028591 SAMN23017081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210468507/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.900334 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.335829 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.323021 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028592 SAMN23015596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210468509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.343871 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.2986555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.00052 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028593 SAMN23015595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210468510/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.670925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.252066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.826263 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028594 SAMN23018153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210468514/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.921011 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.747034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.646105 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028595 SAMN23016215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.294733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.701885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.708418 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028596 SAMN23016907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210468512/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.437284 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.622275 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.7065325 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028597 SAMN23016214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468517/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.997338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.25194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.781499 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028598 SAMN23016213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468518/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.13249 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.778977 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.564647 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028599 SAMN23016212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468519/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.601017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.173908 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.089712 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028600 SAMN23018485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468521/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.537672 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.296113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.961883 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028601 SAMN23018484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468522/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.9894876 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.3112335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.153621 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028602 SAMN23016210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468524/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.09168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.5057955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.124137 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028603 SAMN23016211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468523/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.87457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.76844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.86786 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028604 SAMN23016530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210468483/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.968679 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.84098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.250649 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028605 SAMN23017775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210468484/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.474046 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.904054 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.264934 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028606 SAMN23016804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210468525/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.093899 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.868393 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.774923 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028607 SAMN23017774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210468486/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.38907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.897131 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.504492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028608 SAMN23017504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210468620/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.284021 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.975344 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.905012 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028609 SAMN23017503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210468621/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.40651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.123762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.740215 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028610 SAMN23017502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210468622/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.01872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.183361 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.20511 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028611 SAMN23019103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468623/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.754625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.515948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.38788 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028612 SAMN23019102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468624/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.594174 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.3236065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.432673 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028613 SAMN23019101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468625/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.553568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.566328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.774994 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028614 SAMN23019100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468626/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.4669 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.875105 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.013462 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028615 SAMN23017845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210471763/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.25616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.18928 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.567198 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028616 SAMN23017221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210471764/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.222467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.211032 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.998601 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028617 SAMN23016038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210471765/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.74567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.581773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.1519 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028618 SAMN23018712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471766/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.166262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.458328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.360241 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028619 SAMN23018340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210471768/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.933552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.530434 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.02411 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028620 SAMN23015481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471769/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.706232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.028559 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.825293 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028621 SAMN23015479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471771/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.901821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.483698 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.417706 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028622 SAMN23016847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210471774/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.496621 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.9445305 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.590435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028623 SAMN23015480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471770/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.790144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.7741 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.642265 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028624 SAMN23017761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471773/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.102484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.149954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.776154 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028625 SAMN23015486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471740/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.331299 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.281887 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.36646 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028626 SAMN23017479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471744/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.840162 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.423496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.919144 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028627 SAMN23017071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210471780/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.615248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.213404 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.37575 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028628 SAMN23016514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471781/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.37632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.320553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.743547 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028629 SAMN23018139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471778/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.566938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.284285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.158386 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028630 SAMN23016186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471783/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.309456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.160775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.608193 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028631 SAMN23016513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471782/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.776802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.727842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.276705 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028632 SAMN23016185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471784/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.768044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.946293 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.820278 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028633 SAMN23016898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210471785/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.660685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.618673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.40174 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028634 SAMN23016512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471817/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.526037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.676752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.501482 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028635 SAMN23016897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210471786/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.741024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.479078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.784414 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028636 SAMN23018293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210471787/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.918561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.793377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.83634 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028637 SAMN23017476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471789/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.451059 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.691745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.627842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028638 SAMN23017475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471790/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.464985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.786111 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.32099 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028639 SAMN23017474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471793/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.547705 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.981697 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.329533 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028640 SAMN23017473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471794/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.461798 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.427565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.985753 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028641 SAMN23018338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210471822/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.616926 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.880165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.97241 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028642 SAMN23015854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471795/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.657341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.31383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.04818 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028643 SAMN23017472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471797/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.569658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.858246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.674347 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028644 SAMN23016844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210471799/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.300605 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.85011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.458104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028645 SAMN23015478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471796/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.814743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.869364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.278938 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028646 SAMN23017471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471798/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.201542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.979937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.355745 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028647 SAMN23019051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472036/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.512966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.41158 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.355444 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028648 SAMN23016507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472035/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.861248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.48463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.443287 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028649 SAMN23017453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472009/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.786516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.332804 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.24502 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028650 SAMN23015644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210472037/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.339441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.961157 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.535578 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028651 SAMN23016506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472040/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.70972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.657429 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.523834 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028652 SAMN23018456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472043/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.476263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.238392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.958246 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028653 SAMN23017452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472010/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.349657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.757239 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.323143 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028654 SAMN23018457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472042/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.529041 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.314285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.308342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028655 SAMN23019414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210472044/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.972196 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.801689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.233679 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028656 SAMN23018292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210472045/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.233454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.623716 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.69482 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028657 SAMN23016894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210472046/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.052145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.805359 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.0130825 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028658 SAMN23018455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472047/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.880117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.787397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.619062 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028659 SAMN23015840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472048/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.542582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.821676 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.183718 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028660 SAMN23015839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472053/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.432243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.417011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.899424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028661 SAMN23016794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210472055/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.914613 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.800806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.163055 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028662 SAMN23016633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210472056/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.0787325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.366995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.84222 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028663 SAMN23016505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472057/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.673462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.665844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.265798 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028664 SAMN23015316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472060/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.297401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.655455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.566673 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028665 SAMN23015315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472061/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.737556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.141146 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.857878 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028666 SAMN23015317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472059/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.422625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.022902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.241442 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028667 SAMN23018454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472062/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.598694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.69133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.482512 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028668 SAMN23018291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210472063/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.542582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.016064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.405151 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028669 SAMN23018290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210472064/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.491116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.000655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.375327 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028670 SAMN23016631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210472066/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.612338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.254375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.027923 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028671 SAMN23016632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210472065/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.505379 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.359837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.874903 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028672 SAMN23016630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210472067/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.181372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.27206 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.782728 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028673 SAMN23016504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472069/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.849382 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.312702 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.95489 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028674 SAMN23015841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472039/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.966557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.014597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.323875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028675 SAMN23018706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472073/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.500813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.249775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.862702 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028676 SAMN23018707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472072/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.129307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.56842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.167862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028677 SAMN23016180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472074/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.104367 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.435602 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.307947 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028678 SAMN23016179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472075/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.825176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.48304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.165398 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028679 SAMN23015449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.713556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.765648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.360739 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028680 SAMN23015448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473140/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.483395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.3254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.686594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028681 SAMN23015443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473176/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.907213 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.160923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.374712 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028682 SAMN23015447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473141/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.657207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.614957 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.735032 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028683 SAMN23017025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210473179/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.769622 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.848208 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.662505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028684 SAMN23015442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473177/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.743182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.674174 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.570968 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028685 SAMN23017024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210473181/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.806765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.617702 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.592644 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028686 SAMN23017023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210473182/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.692853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.406156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.766982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028687 SAMN23016790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473186/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.695106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.143749 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.605064 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028688 SAMN23016791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473184/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.795163 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.446736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.868011 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028689 SAMN23015305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210473187/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.229639 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.642702 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.783743 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028690 SAMN23016792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473183/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.844948 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.159616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.594298 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028691 SAMN23019412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210473188/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.679893 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.633888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.736164 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028692 SAMN23018109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473194/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.81885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.371994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.719637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028693 SAMN23016162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473189/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.432266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.555432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.753237 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028694 SAMN23015638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210473192/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.744522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.51999 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.177809 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028695 SAMN23016789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473195/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.572848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.76758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.615275 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028696 SAMN23015440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473197/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.649941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.531742 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.425084 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028697 SAMN23015803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473199/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.762497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.570972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.846633 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028698 SAMN23016681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210473200/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.512564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.509083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.451307 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028699 SAMN23016488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473201/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.253179 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.979888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.597142 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028700 SAMN23019303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473203/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.940138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.78338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.01353 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028701 SAMN23015445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473174/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.804768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.537672 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.97283 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028702 SAMN23019302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473204/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.7551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.221247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.883331 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028703 SAMN23018216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.624702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.290441 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.082131 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028704 SAMN23015444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473175/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.849117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.454603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.530611 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028705 SAMN23018996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473237/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.242699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.277328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.739298 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028706 SAMN23015801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473207/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.494959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.480694 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.282068 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028707 SAMN23018108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473209/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.444506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.310997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.88823 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028708 SAMN23018106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473211/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.374529 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.230066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.179752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028709 SAMN23018107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473210/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.108498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.261353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.21273 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028710 SAMN23017654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210473244/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.120564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.933948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.571079 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028711 SAMN23016608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473698/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.62516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.911716 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.409971 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028712 SAMN23016607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473699/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.592729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.696688 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.9078455 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028713 SAMN23016606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473700/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.520719 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.892043 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.0683565 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028714 SAMN23018424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473701/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.567863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.896704 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.944431 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028715 SAMN23018423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473703/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.437893 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.873126 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.576157 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028716 SAMN23016263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210473705/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.456465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.529277 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.774608 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028717 SAMN23016361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210473704/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.803806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.173122 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.656319 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028718 SAMN23017401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473572/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.593227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.259403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.28225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028719 SAMN23017400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473573/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.343372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.661608 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.51362 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028720 SAMN23018973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473574/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.813736 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.6809 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.48798 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028721 SAMN23017399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473576/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.5048895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.035619 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028722 SAMN23016153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473708/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.888521 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.656376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.676672 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028723 SAMN23018328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210473709/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.960896 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.781374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.929161 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028724 SAMN23017939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473710/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.902539 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.505425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.519351 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028725 SAMN23018964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473711/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.444778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.332909 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.315134 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028726 SAMN23018963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473713/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.4251 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.591478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.393147 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028727 SAMN23018962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473714/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.390148 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.642788 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.64829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028728 SAMN23018961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473715/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.4818535 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.664689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.41972 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028729 SAMN23015410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473716/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.44234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.990728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.723432 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028730 SAMN23015409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473718/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.626894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.744028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.818516 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028731 SAMN23015408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473719/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.034522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.6502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.59825 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028732 SAMN23015407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473720/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.647846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.322006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.362058 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028733 SAMN23017938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473721/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.597599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.791874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.209929 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028734 SAMN23018219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210472828/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.207232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.611595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.381947 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028735 SAMN23015814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472829/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.988102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.007921 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.61619 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028736 SAMN23017208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472853/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.671968 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.708723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.221142 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028737 SAMN23016168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472854/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.100103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.810232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.82344 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028738 SAMN23017206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472857/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.034985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.792755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.455451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028739 SAMN23017207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472856/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.775611 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.276873 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.239511 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028740 SAMN23015640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210472855/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.132323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.731385 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.412064 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028741 SAMN23017205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472858/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.605024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.626558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.724424 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028742 SAMN23018651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473773/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.986113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.149538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.959024 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028743 SAMN23015639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210472859/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.90006 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.49634 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.928823 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028744 SAMN23018951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473774/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.488619 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.501472 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.499971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028745 SAMN23017836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210473778/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.8723416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.236141 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.532846 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028746 SAMN23017837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210473777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.860415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.585964 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.898697 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028747 SAMN23017180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473779/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.816803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.5544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.54156 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028748 SAMN23016477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473780/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.293734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.314568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.14822 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028749 SAMN23019293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473781/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.438558 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.482311 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.215818 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028750 SAMN23019292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473782/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.212551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.920682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.738342 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028751 SAMN23018950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473784/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.060941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.245426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.753296 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028752 SAMN23019291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473783/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.711568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.636638 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.516848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028753 SAMN23016605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.246532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.893816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.686647 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028754 SAMN23016152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473763/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.753768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.599607 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.504835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028755 SAMN23018949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473791/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.913089 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.337331 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.003032 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028756 SAMN23016603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473975/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.151411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.432501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.280123 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028757 SAMN23016602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.745332 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.661555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.448588 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028758 SAMN23016601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473977/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.460546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 7.5410123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.0065575 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028759 SAMN23016600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473978/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.309464 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.368084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.140451 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028760 SAMN23016599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473979/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.886954 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.516454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.223818 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028761 SAMN23015633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210473982/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.67421 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.36419 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.357664 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028762 SAMN23016598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473980/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 85 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.398598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.271696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.849724 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028763 SAMN23019289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473981/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.228214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.315303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.326392 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028764 SAMN23018948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474078/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.894785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.926609 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.781523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028765 SAMN23017019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210474079/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.597642 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.705288 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.5499115 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028766 SAMN23017017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210474081/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.20528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.23667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.361323 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028767 SAMN23017018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210474080/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.465067 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.95737 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.506583 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028768 SAMN23015556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WA-CDC-ASC210474082/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.347689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.581778 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.59013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028769 SAMN23016047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210474083/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.59323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.670502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.464687 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028770 SAMN23015779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474086/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.27291 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.800613 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.502245 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028771 SAMN23017872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210473785/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.391708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.391102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.54207 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028772 SAMN23017016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210474084/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.28705 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.353268 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.14762 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028773 SAMN23019290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473786/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.4571548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.879725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.658996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028774 SAMN23015563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VT-CDC-ASC210473788/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.34564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.220774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.461416 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028775 SAMN23018960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473724/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.881407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.647202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.523858 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028776 SAMN23017183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473723/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.83637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.23414 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.336098 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028777 SAMN23015787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473727/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.164469 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.931946 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.982536 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028778 SAMN23015788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473726/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.173347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.824532 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.977287 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028779 SAMN23016953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473728/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.755355 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.616211 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.3960705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028780 SAMN23016048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210473730/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.778963 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.712903 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.296682 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028781 SAMN23015786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473731/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.363138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.86312 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.585463 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028782 SAMN23015634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210473732/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.815509 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.520141 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.26491 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028783 SAMN23018329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210473706/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.794795 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.93188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.213055 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028784 SAMN23015718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475861/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.589007 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.911789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.66787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028785 SAMN23016866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210475862/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.430328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.414878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.529848 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028786 SAMN23017344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475863/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.826037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.263648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.9639015 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028787 SAMN23016111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475865/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.369432 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.734172 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.58108 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028788 SAMN23016865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210475866/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.180291 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.448286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.136346 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028789 SAMN23015937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475867/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.275681 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.483241 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.919709 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028790 SAMN23016580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475869/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 90 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.787652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.703653 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.607597 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028791 SAMN23015369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475872/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.3693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.5435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.92006 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028792 SAMN23016438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475873/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.367464 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.436223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.138103 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028793 SAMN23016437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475874/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.662652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.656109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.918436 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028794 SAMN23015717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475875/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.551039 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.945892 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.8154745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028795 SAMN23015716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475876/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.345737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.687774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.808399 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028796 SAMN23016760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475922/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.787362 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.568097 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.535494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028797 SAMN23018596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475877/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.896421 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.102015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.408421 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028798 SAMN23019393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210475880/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.70318 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.599778 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.593527 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028799 SAMN23015936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475881/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.554334 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.480824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.819789 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028800 SAMN23019392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210475882/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.952347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.210075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.595742 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028801 SAMN23015710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475927/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.082727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.698627 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.528805 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028802 SAMN23015368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475883/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.993123 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.525784 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.23949 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028803 SAMN23015715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475884/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.553213 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.839253 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.021602 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028804 SAMN23017916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475904/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.453424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.700747 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.922046 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028805 SAMN23015713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475906/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.786179 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.259096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.310394 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028806 SAMN23015714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475905/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.477282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.704216 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.097992 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028807 SAMN23017128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475910/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.79471 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.333151 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.334485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028808 SAMN23017915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475907/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.43474 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.138522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.157313 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028809 SAMN23016579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475911/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.969883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.352068 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.638824 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028810 SAMN23018316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210475912/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.561127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.521029 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.83227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028811 SAMN23018595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475913/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.740959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.749023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.2513895 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028812 SAMN23015712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475915/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.402134 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.25978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.21493 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028813 SAMN23016578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475914/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.981567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.982176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.465536 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028814 SAMN23017914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475917/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.850828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.369673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.383516 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028815 SAMN23017127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475916/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.89478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.410078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.074587 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028816 SAMN23015694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476340/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.340378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.725897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.6151 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028817 SAMN23015693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476341/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.366233 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.423708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.792743 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028818 SAMN23018830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476342/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.286843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.642661 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.656059 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028819 SAMN23015927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210476315/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.4325075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.171319 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.791334 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028820 SAMN23015926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210476316/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.400994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.549008 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.055915 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028821 SAMN23017317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476345/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.701437 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.686488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.979359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028822 SAMN23017316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476346/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.104143 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.241108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.301884 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028823 SAMN23018828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476347/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.295576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.019697 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.99853 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028824 SAMN23018827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476348/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.909578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.952227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.133312 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028825 SAMN23018826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476349/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.137213 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.851341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.273444 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028826 SAMN23018824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476351/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.906715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.371103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.024445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028827 SAMN23018823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476352/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.576347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.717803 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.189843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028828 SAMN23018822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476353/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.414793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.3141575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.948236 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028829 SAMN23017119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476354/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.869845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.953406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.289785 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028830 SAMN23018578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476356/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.448858 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.823053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.308912 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028831 SAMN23018577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476357/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.013463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.411974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.863988 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028832 SAMN23017037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210476358/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.67277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.786957 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.394958 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028833 SAMN23017118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476359/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.618999 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.159482 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.311517 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028834 SAMN23017117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476360/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.586115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.11233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.22412 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028835 SAMN23017116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476361/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.545792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.7567835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.31996 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028836 SAMN23017114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476363/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.631132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.975313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.343143 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028837 SAMN23017113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476364/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.552715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.7619 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.435184 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028838 SAMN23017115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476362/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.39427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.971888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.509157 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028839 SAMN23017905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476367/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.694515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.430305 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.44887 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028840 SAMN23015363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476365/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.661962 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.254242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.765609 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028841 SAMN23017112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476366/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.6074 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.471996 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.339052 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028842 SAMN23018829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476343/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.262041 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.430292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.676836 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028843 SAMN23017318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476344/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.432578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.837917 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.716298 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028844 SAMN23018576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476370/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.557638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.151016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.849174 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028845 SAMN23018037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476373/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.317377 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.010462 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.359882 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028846 SAMN23017693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476372/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.449047 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.370422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.278324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028847 SAMN23018036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476374/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.956429 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.543226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.28431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028848 SAMN23015911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210463385/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.473293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.974272 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.176264 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028849 SAMN23018169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210463386/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.365572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.8438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.182476 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028850 SAMN23017578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210463387/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.624977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.4175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.871922 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028851 SAMN23017577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210463388/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.995382 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.422468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.810585 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028852 SAMN23016028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210463000/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.100883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.290106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.950062 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028853 SAMN23016027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210463001/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.33754 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.327666 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.795288 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028854 SAMN23016549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210463401/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.718288 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.6663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.147783 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028855 SAMN23019385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210463402/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.818851 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.843801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.642058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028856 SAMN23019384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210463404/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.686693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.225548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.836033 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028857 SAMN23019383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210463405/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.719845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.326275 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.904787 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028858 SAMN23016828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210463413/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.730371 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.041301 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.268069 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028859 SAMN23016067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210463415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.535465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.665667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.5319605 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028860 SAMN23017007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210463416/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.467422 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.46701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.881385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028861 SAMN23017006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210463417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.556324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.388888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.223286 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028862 SAMN23015341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210463422/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.528263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.558857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.639898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028863 SAMN23015340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210463426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.662429 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.045696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.797147 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028864 SAMN23017005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210463423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.749952 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.77554 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.26465 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028865 SAMN23017574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210463427/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.636782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.146362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.793765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028866 SAMN23017573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210463429/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.181322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.407834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.394747 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028867 SAMN23015544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210465880/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.692276 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.455713 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.37194 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028868 SAMN23018360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210466028/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.43775 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.675724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.11131 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028869 SAMN23018359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210466029/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.99623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.864546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.620539 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028870 SAMN23017288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210466033/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.672699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.440529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.049284 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028871 SAMN23018358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210466031/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.36131 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.719297 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.598951 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028872 SAMN23018006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210466061/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.643185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.377357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.837263 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028873 SAMN23017576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210463392/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.789528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.176926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.003048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028874 SAMN23017575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210463393/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.806465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.174975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.663375 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028875 SAMN23016550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210463396/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.570531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.186356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.930711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028876 SAMN23019380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466110/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.971172 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.548885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.215572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028877 SAMN23019204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466066/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.320179 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.457488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.20182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028878 SAMN23015543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210466065/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.804642 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.684566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.463654 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028879 SAMN23018779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210466067/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.112936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.97444 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.336014 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028880 SAMN23017533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467469/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.004673 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.0226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.685858 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028881 SAMN23015527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.373465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.420935 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.46445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028882 SAMN23017268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467447/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.16096 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.742493 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.348814 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028883 SAMN23017088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210467446/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.921192 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.646057 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.3101 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028884 SAMN23017267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467448/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.539827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.452445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.862214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028885 SAMN23018760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467474/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.75099 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.46407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.932129 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028886 SAMN23018160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210467450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.166983 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.614202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.73433 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028887 SAMN23018161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210467449/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.587065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.802744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.794306 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028888 SAMN23018766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467451/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.244715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.54276 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.492847 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028889 SAMN23018765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467452/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.157254 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.5794325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.832398 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028890 SAMN23017540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.932823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.447521 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.425053 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028891 SAMN23019342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467479/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.827644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.16702 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.752998 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028892 SAMN23015891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467432/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.464552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.343701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.732423 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028893 SAMN23017539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467454/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.853912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.485487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.966661 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028894 SAMN23018503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467433/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.66104 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.641225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.3270855 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028895 SAMN23016418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210467484/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.264685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.800741 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.832268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028896 SAMN23017534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.265741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.141142 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.909182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028897 SAMN23019346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.81838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.245226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.207851 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028898 SAMN23017535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467458/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.38142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.667106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.330772 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028899 SAMN23019345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467461/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.701576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.511464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.926958 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028900 SAMN23019343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467463/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.225809 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.011071 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.6675 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028901 SAMN23019344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.422149 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.964935 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.970537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028902 SAMN23017624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210467490/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.311947 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.64305 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.806974 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028903 SAMN23017087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210467466/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.096114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.523392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.313131 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028904 SAMN23019132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467464/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.38774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.192507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.39497 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028905 SAMN23018003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210467468/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.476702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.426205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.888744 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028906 SAMN23018764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467470/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.414186 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.882284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.711792 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028907 SAMN23018763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467471/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.083986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.941113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.93339 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028908 SAMN23018761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467473/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.181349 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.485508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.825338 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028909 SAMN23018762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467472/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.202228 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.730655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.538431 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028910 SAMN23018759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467475/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.718236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.478936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.895846 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028911 SAMN23017850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210467500/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.423252 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.557257 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.57714 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028912 SAMN23017501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210468627/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.515532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.41699 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.563647 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028913 SAMN23015505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210468634/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.819459 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.209171 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.974608 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028914 SAMN23017235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468641/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.809216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.437711 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.1879835 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028915 SAMN23017080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210468643/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.825112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.97169 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.609968 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028916 SAMN23017885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210468644/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.994265 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.027812 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.816446 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028917 SAMN23018309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210468647/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.753962 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.6048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.381261 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028918 SAMN23019099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468649/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.957036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.716204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.33443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028919 SAMN23018308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210468648/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.88655 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.841381 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.941631 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028920 SAMN23019098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468650/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.445483 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.822425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.334797 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028921 SAMN23019097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468652/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.29538 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.017939 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.06453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028922 SAMN23019096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468653/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.445959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.182104 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.134467 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028923 SAMN23015873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210468527/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.641462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.526538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.544431 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028924 SAMN23018237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210468619/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.8045635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.196925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.612171 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028925 SAMN23016203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468687/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.891632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.900421 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.938122 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028926 SAMN23018482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468663/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.643751 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.358177 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.753155 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028927 SAMN23015504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210468658/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.585171 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.78987 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.384967 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028928 SAMN23018483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468659/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.299694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.625293 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.511941 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028929 SAMN23018480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468692/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.88732 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.945673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.219841 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028930 SAMN23016647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210468665/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.557804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.43534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.943171 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028931 SAMN23016648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210468664/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.909771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.721584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.336744 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028932 SAMN23018236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210468667/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.429256 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.664793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.298965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028933 SAMN23017500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210468628/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.928933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.224262 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.404979 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028934 SAMN23018234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210468669/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.846115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.398317 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.936447 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028935 SAMN23018235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210468668/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.329299 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.525713 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.97919 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028936 SAMN23018477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468698/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.57983 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.959139 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.014301 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028937 SAMN23015506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210468629/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.127699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.847223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.492872 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028938 SAMN23018233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210468671/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.581963 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.311758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.802437 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028939 SAMN23018232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210468672/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.86122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.651535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.996767 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028940 SAMN23016019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469949/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.7710905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.30804 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.5476 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028941 SAMN23018231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210468673/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.517919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.375471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.282387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028942 SAMN23015328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210468675/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.5872345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.034066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.984353 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028943 SAMN23016209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468674/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.99817 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.628864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.808306 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028944 SAMN23016885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210473214/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.864923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.57617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.709272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028945 SAMN23015800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473213/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.70347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.279696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.92338 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028946 SAMN23017608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210473292/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.262594 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.869303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.474472 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028947 SAMN23015438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473218/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.49253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.667786 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.556509 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028948 SAMN23015439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473217/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.6817875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.276768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.015009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028949 SAMN23015799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473215/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.219183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.793318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.276657 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028950 SAMN23015436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473221/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.718902 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.586922 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.461982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028951 SAMN23015434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473223/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.36399 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.4296055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.986933 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028952 SAMN23015437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473220/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.572702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.88795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.78623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028953 SAMN23015435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473222/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.343808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.907608 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.736317 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028954 SAMN23018530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210473297/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.549814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.530085 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.300653 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028955 SAMN23015433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473224/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.4651375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.834476 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.116036 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028956 SAMN23018435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473225/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.99371 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.863318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.697591 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028957 SAMN23018434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473226/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.9886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.497416 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.735477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028958 SAMN23017193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473303/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.550049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.67392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.242224 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028959 SAMN23015583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210473228/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.80766 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.86777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.051516 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028960 SAMN23018669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473229/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.953933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.713712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.515905 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028961 SAMN23018433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473230/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.709455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.860397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.655024 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028962 SAMN23018997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473232/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.996925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.637007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.210281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028963 SAMN23018213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473310/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.129575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.337035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.024038 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028964 SAMN23018215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473234/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.602316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.680353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.741663 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028965 SAMN23019301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473205/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.87406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.458279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.050684 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028966 SAMN23015802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473206/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.433729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.721255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.548422 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028967 SAMN23016787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473316/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.367303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.975776 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.557702 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028968 SAMN23018214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473236/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.893587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.020733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.945783 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028969 SAMN23018994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473239/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.358803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.539825 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.236889 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028970 SAMN23019300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473240/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.11941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.207039 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.08806 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028971 SAMN23018993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473243/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.293161 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.905102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.963047 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028972 SAMN23017653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210473245/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.657713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.781137 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.013714 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028973 SAMN23016785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473321/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.639275 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.6680565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.697135 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028974 SAMN23018992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473289/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.22891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.58851 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.2042055 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028975 SAMN23015432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473290/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.677265 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.607498 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.07795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028976 SAMN23016154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473707/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 91 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.433912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.388144 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.36121 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028977 SAMN23017646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210473740/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.31839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.868693 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.369002 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028978 SAMN23018958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473738/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.7293215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.4487505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.794751 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028979 SAMN23016478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473737/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.736311 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.088095 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.03192 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028980 SAMN23015785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473741/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.001413 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.806635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.623459 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028981 SAMN23015783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473743/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.223896 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.132963 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.664585 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028982 SAMN23015784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473742/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.587345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.730913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.32507 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028983 SAMN23017021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210473744/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.657398 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.88918 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.638662 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028984 SAMN23018956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473747/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.419571 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.504216 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.926756 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028985 SAMN23018957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473746/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.35547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.591446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.028448 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028986 SAMN23017020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210473745/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.912379 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.933538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.516443 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028987 SAMN23015304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210473749/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.349602 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.84388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.670872 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028988 SAMN23018955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473748/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.867424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.59891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.453517 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028989 SAMN23018954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473750/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.364292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.811426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.89612 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028990 SAMN23018953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473753/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.931343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.298212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.273983 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028991 SAMN23015782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473755/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.995548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.778992 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.996572 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028992 SAMN23018654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473757/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.176978 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.418208 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.86815 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028993 SAMN23018653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473758/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.860283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.892496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.985886 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028994 SAMN23018952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473754/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.738613 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.6556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.839611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028995 SAMN23016883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210473759/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.568016 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.433641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.721183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028996 SAMN23017396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473733/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.928138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.537248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.592714 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028997 SAMN23015781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.33034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.683992 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.444809 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028998 SAMN23018959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473734/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.246534 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.904689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.635808 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11028999 SAMN23016151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473764/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.007559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.687841 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.462309 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029000 SAMN23017395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473736/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.49527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.35263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.187699 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029001 SAMN23018092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473765/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.170602 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.667843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.663569 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029002 SAMN23016604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473766/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.177868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.764893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.582983 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029003 SAMN23019294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473768/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.196307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.167229 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.219234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029004 SAMN23017394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473769/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.354693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.583577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.51004 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029005 SAMN23017181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473771/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.167585 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.825843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.598614 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029006 SAMN23018652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473772/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.077403 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.369707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.500967 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029007 SAMN23017182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473770/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.978602 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.8747 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.286427 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029008 SAMN23017285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210466115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.374838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.396433 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.239798 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029009 SAMN23017287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210466080/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.981407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.498026 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.293829 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029010 SAMN23016548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210466082/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.535044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.942972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.665209 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029011 SAMN23016547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210466083/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.602956 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.769651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.500976 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029012 SAMN23018357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210466086/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.225485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.856106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.948114 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029013 SAMN23016546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210466084/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.9119396 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.682897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.095873 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029014 SAMN23019199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466121/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.603107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.850636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.83516 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029015 SAMN23018514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210466087/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.4133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.27396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.74754 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029016 SAMN23018513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210466088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.733656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.740156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.579372 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029017 SAMN23016827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210466089/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.696733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.90571 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.65414 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029018 SAMN23016826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210466091/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.968565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.341679 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.497384 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029019 SAMN23015910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466100/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.276304 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.366266 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.220858 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029020 SAMN23019203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466101/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.639434 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.120186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.460187 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029021 SAMN23018168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210466104/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.184383 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.328876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.76798 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029022 SAMN23015909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466103/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.128159 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.393225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.364465 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029023 SAMN23016041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210466102/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.691957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.933441 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.415762 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029024 SAMN23018167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210466105/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.586802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.667212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.485847 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029025 SAMN23016242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210466062/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.692846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.57777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.968935 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029026 SAMN23015908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466107/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.501277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.368189 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.921349 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029027 SAMN23016241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210466063/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.010086 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.769918 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.500998 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029028 SAMN23019381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466109/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.479106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.637783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.693532 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029029 SAMN23019382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466108/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.968452 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.7571125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.589962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029030 SAMN23019202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466112/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.63164 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.672608 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.7905655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029031 SAMN23016671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210466064/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.879132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.101432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.693281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029032 SAMN23016422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210466113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.898426 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.378916 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.547514 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029033 SAMN23019201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466117/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.33846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.699478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.72416 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029034 SAMN23017286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210466114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.003261 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.140631 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.185984 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029035 SAMN23015907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466120/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.977802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.648851 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.032616 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029036 SAMN23017680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210466119/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.690813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.670225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.390118 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029037 SAMN23019200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.142277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.495597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.844604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029038 SAMN23019378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466123/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.813015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.731337 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.628157 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029039 SAMN23019379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.298827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.96886 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.418409 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029040 SAMN23016177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472077/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.052431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.360043 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.532986 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029041 SAMN23016178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472076/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.895294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.421938 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.13641 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029042 SAMN23015467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472078/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.219275 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.255964 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.913213 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029043 SAMN23015465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472080/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.405163 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.658358 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.69699 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029044 SAMN23015466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472079/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.856514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.494016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.223647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029045 SAMN23019049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472082/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.591385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.772986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.493443 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029046 SAMN23019048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472083/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.454938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.57187 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.231964 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029047 SAMN23019047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472084/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.272766 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.824731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.763457 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029048 SAMN23019046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472085/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.205906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.400217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.18316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029049 SAMN23018705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472087/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.435808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.724375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.61525 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029050 SAMN23018704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.577916 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.743915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.442774 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029051 SAMN23018130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.600199 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.078371 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.837003 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029052 SAMN23019045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472089/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.177547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.336433 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.442562 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029053 SAMN23015560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WA-CDC-ASC210472091/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.569867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.655205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.682297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029054 SAMN23016683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210472092/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.90822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.912691 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.20546 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029055 SAMN23019044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472093/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.510301 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.474905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.735579 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029056 SAMN23015468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472070/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.632303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.416613 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.796106 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029057 SAMN23015314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472098/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.495929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.807081 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.190066 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029058 SAMN23019050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472071/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.27364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.750862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.543404 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029059 SAMN23015313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472099/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.231802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.499722 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.737173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029060 SAMN23019321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210472100/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.430946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.6405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.522598 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029061 SAMN23016629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210472101/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.00491 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.060228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.583387 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029062 SAMN23018453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.688325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.421217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.464097 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029063 SAMN23018451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.163738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.896446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.718818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029064 SAMN23018452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.169699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.427313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.198217 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029065 SAMN23016053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210472116/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.547931 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.585112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.364114 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029066 SAMN23016052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210472117/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.715775 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.96233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.75531 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029067 SAMN23019043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.883523 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.132648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.901379 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029068 SAMN23019042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472119/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.625367 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.75622 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.90476 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029069 SAMN23019041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472120/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.00302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.836862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.4121 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029070 SAMN23019039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472123/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.507137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.545725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.588932 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029071 SAMN23019040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472121/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.792305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.918506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.7678995 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029072 SAMN23017641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210474997/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.120262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.952527 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.737073 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029073 SAMN23017642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210474996/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.183174 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.572164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.689521 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029074 SAMN23015623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210475026/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.748253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.195848 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.926798 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029075 SAMN23015294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210474998/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.79284 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.442286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.024601 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029076 SAMN23016134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474999/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.263277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.263311 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.02348 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029077 SAMN23017640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210475000/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.528204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.95898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.88086 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029078 SAMN23017639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210475003/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.379539 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.388138 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.705042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029079 SAMN23018619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475001/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.36111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.699163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.496872 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029080 SAMN23015624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210475005/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.345692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.927685 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.178848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029081 SAMN23017158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475004/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.448906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.49594 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.4681 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029082 SAMN23017157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475006/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.292967 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.4651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.126204 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029083 SAMN23017156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475007/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.985989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.881329 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.859589 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029084 SAMN23017373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475036/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.62815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.276753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.601355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029085 SAMN23017806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210475008/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.43727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.823957 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.216188 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029086 SAMN23016404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210474983/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.519928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.999118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.367086 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029087 SAMN23018403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474985/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.739567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.532776 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.75123 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029088 SAMN23017149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475041/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.217008 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.829726 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.634237 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029089 SAMN23016030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210474984/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.441837 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.250183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.173235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029090 SAMN23016029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210474986/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.665224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.001874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.585965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029091 SAMN23018894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474988/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.238995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.28519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.660162 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029092 SAMN23016873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210475009/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.500433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.817085 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.919195 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029093 SAMN23017726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475048/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.810623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.159801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.953745 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029094 SAMN23017155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475013/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.902091 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.516734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.598766 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029095 SAMN23017154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475016/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.143475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.20451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.787737 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029096 SAMN23017153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475017/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.008022 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.295038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.058016 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029097 SAMN23015562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VT-CDC-ASC210475020/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.156746 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.983772 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.124146 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029098 SAMN23017601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210475021/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.731527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.893589 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.532434 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029099 SAMN23017600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210475022/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.73451 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.360079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.113297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029100 SAMN23018075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475025/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.691294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.558456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.27591 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029101 SAMN23015622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210475027/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.891014 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.687204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.497955 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029102 SAMN23017044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210475028/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.966485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.578159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.486685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029103 SAMN23017375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475029/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.88116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.959905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.10477 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029104 SAMN23017141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475385/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.18326 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.085328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.782385 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029105 SAMN23018873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475386/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.777204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.525936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.4425335 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029106 SAMN23018872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475387/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.198605 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.11689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.494362 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029107 SAMN23017919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475434/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.361182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.231323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.806769 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029108 SAMN23018391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475436/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.970612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.383494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.28392 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029109 SAMN23017710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475437/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.358704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.174158 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.178604 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029110 SAMN23017709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475438/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.1753 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.262723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.8224325 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029111 SAMN23015484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471748/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.29987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.627106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.77349 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029112 SAMN23015482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471750/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.70136 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.85707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.945467 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029113 SAMN23015483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471749/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.480057 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.206736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.226398 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029114 SAMN23017478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471751/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.370337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.600041 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.425611 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029115 SAMN23016187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471754/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.957863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.109974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.147165 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029116 SAMN23016516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471760/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.834137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.629738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.380367 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029117 SAMN23017477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471759/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.159947 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.8202505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.861482 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029118 SAMN23016515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.54689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.54154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.570328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029119 SAMN23015843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472001/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.615046 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.752508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.880974 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029120 SAMN23017846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210471762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.142218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.605904 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.699257 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029121 SAMN23017456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472003/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.557299 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.776838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.834898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029122 SAMN23017457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472002/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.515822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.612126 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.1785965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029123 SAMN23017455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472004/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.357454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.667635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.411295 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029124 SAMN23018133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472007/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.139168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.993185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.030369 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029125 SAMN23018134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472006/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.7412 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.259338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.62028 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029126 SAMN23017454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472008/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.696622 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.705705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.344996 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029127 SAMN23017971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471979/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.447962 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.662025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.5877495 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029128 SAMN23018229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210471981/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.595609 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.843861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.551208 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029129 SAMN23018137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471983/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.818724 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.529356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.498112 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029130 SAMN23016982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210472038/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.9918165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.806339 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.698796 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029131 SAMN23016183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472011/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.789827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.59361 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.484087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029132 SAMN23016182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472012/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.825984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.325199 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.283802 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029133 SAMN23015842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472016/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.741995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.013102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.634989 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029134 SAMN23018459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472017/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.491737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.80706 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.588995 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029135 SAMN23018458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472018/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.318039 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.054708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.716166 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029136 SAMN23018132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472019/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.04873 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.456603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.89644 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029137 SAMN23018131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472020/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.875928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.755153 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.668897 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029138 SAMN23019055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472023/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.456886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.140789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.574793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029139 SAMN23019056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472022/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.337345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.90251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.287713 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029140 SAMN23016181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472049/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.608078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.71834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.510343 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029141 SAMN23017970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472024/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.848381 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.640888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.864344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029142 SAMN23015648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210472026/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.350627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.815942 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.306476 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029143 SAMN23019054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472027/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.713056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.637825 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.726583 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029144 SAMN23019053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472028/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.649675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.03927 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.581617 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029145 SAMN23015318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472058/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.932204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.613989 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.558924 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029146 SAMN23016509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472029/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.420065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.264765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.602417 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029147 SAMN23015647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210472030/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.384989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.623398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.408894 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029148 SAMN23015646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210472031/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.654879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.172962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.526865 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029149 SAMN23016508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472032/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.838189 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.883387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.177786 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029150 SAMN23019052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472033/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.792629 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.79276 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.749359 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029151 SAMN23015645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210472034/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.776243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.885909 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.177042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029152 SAMN23018664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473544/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.978067 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.056152 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8757305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029153 SAMN23018978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473494/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.220741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.256237 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.423719 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029154 SAMN23015412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473520/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.67751 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.944561 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.921377 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029155 SAMN23017410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473523/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.840073 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.327388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.203098 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029156 SAMN23017411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473522/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.593075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.918213 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.879477 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029157 SAMN23017404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473549/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.151016 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.454477 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.384964 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029158 SAMN23018976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473524/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.555864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.747679 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.055573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029159 SAMN23018975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473525/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.250683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.594837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.399767 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029160 SAMN23016884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210473526/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.175328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.481552 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.971729 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029161 SAMN23018529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210473527/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.43516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.368404 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.504472 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029162 SAMN23016033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210473529/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.960086 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.84642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.886569 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029163 SAMN23016957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473530/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.241034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.511751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.640581 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029164 SAMN23016479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473528/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.945374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.571768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.920158 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029165 SAMN23018095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473533/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.60026 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.503004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.821753 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029166 SAMN23017743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210473532/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.912132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.84066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.252789 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029167 SAMN23018660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473559/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.366863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.367721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.2013445 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029168 SAMN23018551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210473534/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.359161 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.588343 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.55926 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029169 SAMN23018550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210473536/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.906454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.279547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.755327 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029170 SAMN23017742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210473535/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.875751 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.342046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.948946 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029171 SAMN23016956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473537/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.185775 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.973811 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.720307 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029172 SAMN23017409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473538/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.540472 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.905254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.71212 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029173 SAMN23016954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473540/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.726196 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.604873 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.6303215 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029174 SAMN23018659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473565/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.96838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.454544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.619635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029175 SAMN23018331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210473541/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.915172 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.661132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.847477 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029176 SAMN23017647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210473542/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.443542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.578794 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.192314 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029177 SAMN23017402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473571/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.312638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.258381 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.728385 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029178 SAMN23018426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473543/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.470675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.567942 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.70212 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029179 SAMN23017413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473518/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.633456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.76044 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.144049 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029180 SAMN23017412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473519/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.699262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.769285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.275996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029181 SAMN23017406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473547/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.297771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.200007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.6834545 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029182 SAMN23017405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473548/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.526354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.365509 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.246592 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029183 SAMN23017398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473577/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.91633 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.912176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.914139 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029184 SAMN23018920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474468/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.801771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.91269 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.805513 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029185 SAMN23015768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474470/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.96029 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.612734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.590822 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029186 SAMN23015771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474434/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.7669787 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.4240675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.93269 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029187 SAMN23018275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210474473/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.215596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.3017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8688 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029188 SAMN23019273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474435/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.13102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.843786 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.7492 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029189 SAMN23015390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474475/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.9035845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.937499 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.224823 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029190 SAMN23017167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474476/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.248133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.4005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.076054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029191 SAMN23016943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474437/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.513329 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.941242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.703759 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029192 SAMN23017165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474478/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.948315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.409418 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.769978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029193 SAMN23018642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474481/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.571175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.874863 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.594692 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029194 SAMN23016143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474480/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.494286 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.464556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.976582 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029195 SAMN23018641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474482/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.567057 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.5568495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.717905 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029196 SAMN23015270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210474483/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.065374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.617908 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.385178 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029197 SAMN23018639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474486/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.398846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.677338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.849712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029198 SAMN23017164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474492/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.573345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.674648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.5456 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029199 SAMN23017604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210474491/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.222054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.202747 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.369467 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029200 SAMN23015767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474488/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.926537 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.78841 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.815111 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029201 SAMN23016589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210474494/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.403074 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.273832 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.153639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029202 SAMN23015389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474495/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.762342 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.786436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.206986 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029203 SAMN23018919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474496/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.448273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.612001 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.613552 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029204 SAMN23015630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210474497/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.1816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.23005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.425505 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029205 SAMN23019272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474498/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.5087185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.200308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.896404 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029206 SAMN23019271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474499/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.494639 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.003807 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.36595 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029207 SAMN23019270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474500/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.198899 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.897005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.39395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029208 SAMN23017834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210474501/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.814491 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.301842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.618776 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029209 SAMN23018918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474502/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.260662 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.83474 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.538675 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029210 SAMN23017870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210474506/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.770721 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.427086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.44748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029211 SAMN23017871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210474505/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.550822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.455699 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.514412 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029212 SAMN23019269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474507/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.802952 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.864798 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.014637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029213 SAMN23017166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474477/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.757653 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.890692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.445111 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029214 SAMN23015299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210474512/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.909344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.347605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.93525 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029215 SAMN23016678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210474514/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.204428 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.77233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.500181 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029216 SAMN23018612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475332/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.410364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.46941 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.132778 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029217 SAMN23016872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210475333/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.731231 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.2117 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.822543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029219 SAMN23016871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210475336/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.240461 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.82278 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.865152 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029220 SAMN23018611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475335/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.306356 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.234291 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.287622 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029221 SAMN23017144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475366/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.841888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.930727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.216774 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029222 SAMN23017361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475337/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.340292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.707392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.432067 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029223 SAMN23017713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475338/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.193458 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.769355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.479958 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029224 SAMN23017920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475339/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.874336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.341403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.140592 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029225 SAMN23017360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475341/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.632989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.318931 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.431483 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029226 SAMN23018877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475373/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.962998 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.47251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.632972 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029227 SAMN23017043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210475342/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.274499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.474314 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.884275 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029218 SAMN23017362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475334/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.494026 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.977605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.683839 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029228 SAMN23016453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475344/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.492093 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.405585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.014203 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029229 SAMN23015292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210475347/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.964706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.798467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.763267 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029230 SAMN23018392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475348/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.465198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.509159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.756262 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029231 SAMN23016452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475350/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.26116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.974883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.602017 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029232 SAMN23018875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475378/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.474075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.309743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.171101 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029233 SAMN23015575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210475351/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.052166 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.57839 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.515088 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029234 SAMN23018878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475352/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.310637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.155632 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.742342 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029235 SAMN23016123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475353/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.848708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.696062 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.143376 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029236 SAMN23017366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475318/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.522268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.751126 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.768544 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029237 SAMN23017364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475320/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.36791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.834265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.218002 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029238 SAMN23017365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475319/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.38698 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.425125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.196192 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029239 SAMN23017712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475356/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.990099 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.178099 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.780496 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029240 SAMN23016451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475357/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.428931 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.573401 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.837925 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029241 SAMN23015573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210475359/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.20324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.91673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.38147 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029242 SAMN23016450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475361/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.767864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.36656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.287758 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029243 SAMN23015375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475362/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.542582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.638621 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.922251 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029244 SAMN23016933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475365/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.329224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.614322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.667201 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029245 SAMN23016706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210475367/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.5610285 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.646252 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.288477 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029246 SAMN23015572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210475363/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.512958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.333671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.115735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029247 SAMN23018601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475768/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.447869 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.607433 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.502593 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029248 SAMN23017596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210475369/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.474829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.714937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.32818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029249 SAMN23015372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475818/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.181396 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.211933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.202915 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029250 SAMN23019246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475769/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.226001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.354469 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.921806 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029251 SAMN23016869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210475832/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.487407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.342978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.623539 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029252 SAMN23015267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210475858/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.53276 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.650093 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.240618 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029253 SAMN23016868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210475833/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.274318 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.9069395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.857717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029254 SAMN23017707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475834/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.7680435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.285217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.432699 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029255 SAMN23018853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475835/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.345134 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.877345 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.236031 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029256 SAMN23016676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210475836/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.768853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.386254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.921877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029257 SAMN23017804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210475864/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.364041 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.599855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.920504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029258 SAMN23015371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475839/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.749596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.657837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.622136 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029259 SAMN23019243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475838/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.315671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.187211 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.1154375 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029260 SAMN23017823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210475840/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.710049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.412077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.271136 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029261 SAMN23016401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210475841/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.8283825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.651924 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.168588 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029262 SAMN23016439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475870/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.675453 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.649606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.900916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029263 SAMN23017706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475843/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.469236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.328408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.37607 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029264 SAMN23018852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475845/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.176702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.45633 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.542376 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029265 SAMN23017705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475844/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.030348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.162962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.942928 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029266 SAMN23015719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475846/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.800623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.442962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.515101 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029267 SAMN23016867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210475847/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.274242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.84862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.807782 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029268 SAMN23016441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475848/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.290771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.616298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.745091 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029269 SAMN23017704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475849/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.2774105 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.856194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.665633 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029270 SAMN23015370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475850/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.498692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.957262 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.803216 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029271 SAMN23016581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475852/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.595593 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.290237 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.776465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029272 SAMN23016440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475851/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.360588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.1538515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.957335 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029273 SAMN23016761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475853/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.456431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.373028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.391984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029274 SAMN23017917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475854/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.449186 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.956319 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.843247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029275 SAMN23016400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210475855/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.899826 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.93556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.512821 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029276 SAMN23016045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210475830/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.550633 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.932546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.202722 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029277 SAMN23017131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475857/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.882241 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.5636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.399965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029278 SAMN23016762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475831/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.5561695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.584559 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.446193 lineage/clade name AY.32 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029279 SAMN23016831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210462789/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.385221 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.633602 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.289911 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029280 SAMN23019394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210475860/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.94401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.218021 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.133003 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029281 SAMN23018516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210462976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.766916 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.322203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.841438 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029282 SAMN23018517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210462973/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.392328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.57074 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.967245 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029283 SAMN23017092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210462977/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.9605 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.979961 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.669487 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029284 SAMN23018171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210462979/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.73738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.597057 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.936375 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029285 SAMN23015915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210462980/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.224228 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.346846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.857601 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029286 SAMN23015914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210462981/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.95917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.795412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.780565 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029287 SAMN23015549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210462982/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.708235 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.272078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.558176 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029288 SAMN23015547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210462986/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.576218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.810081 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.430096 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029289 SAMN23015548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210462984/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.761011 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.54684 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.406315 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029290 SAMN23019208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210462989/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.335077 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.956606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.389567 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029291 SAMN23015546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210462992/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.423328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.710669 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.46378 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029292 SAMN23017582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210461380/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.552862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.171027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.688626 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029293 SAMN23015917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210461377/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.190718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.23629 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.476916 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029294 SAMN23016552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210461374/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.605693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.386635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.153343 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029295 SAMN23016672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210463016/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.387701 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.764214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.88562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029296 SAMN23015545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210463017/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.56473 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.498701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.958765 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029297 SAMN23015913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210463024/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.674399 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.113289 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.77072 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029298 SAMN23019207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210463027/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.977245 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.323061 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.30027 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029299 SAMN23017579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210463036/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.792301 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.345196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.503038 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029300 SAMN23017682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210463047/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.354774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.877735 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.804737 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029301 SAMN23018170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210463053/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.573347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.397598 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.452345 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029302 SAMN23016830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210463029/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.814352 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.521563 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.688858 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029303 SAMN23016551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210463056/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.913338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.570812 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.512115 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029304 SAMN23019206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210463063/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.377797 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.403632 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.349238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029305 SAMN23019387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210463371/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.108006 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.158136 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.423809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029306 SAMN23019386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210463373/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.789694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.714197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.399023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029307 SAMN23019205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210463375/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.951212 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.283857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.462118 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029308 SAMN23018515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210463379/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.920153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.736456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.614761 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029309 SAMN23016829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210463377/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.649159 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.840024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.962618 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029310 SAMN23015912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210463383/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.93015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.855387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.051683 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029311 SAMN23017289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210466027/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.404972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.903677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.676626 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029312 SAMN23016965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.13461 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.318281 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.25549 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029313 SAMN23016618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.829456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.64989 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.839355 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029314 SAMN23016617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473133/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.208813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.458253 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.38377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029315 SAMN23015453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473135/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.580221 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.876925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.470566 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029316 SAMN23016616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.91886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.282399 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.596985 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029317 SAMN23015452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.004705 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.155881 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.489634 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029318 SAMN23015451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.388432 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.944023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.548443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029319 SAMN23015450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473138/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.19348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.667928 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.215454 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029320 SAMN23016887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210473115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.641008 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.176424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.061047 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029321 SAMN23016886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210473116/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.378225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.490051 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.377415 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029322 SAMN23016964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473143/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.99477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.42332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.480043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029323 SAMN23017434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473144/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.287253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.963355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.703301 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029324 SAMN23017433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473145/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.977826 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.802359 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.179539 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029325 SAMN23019001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473147/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.768562 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.220041 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.181812 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029326 SAMN23019000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.966438 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.507267 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.790537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029327 SAMN23015441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473178/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.170456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.309341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.31212 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029328 SAMN23019307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473149/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.524059 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.5116415 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.215412 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029329 SAMN23019306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473151/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.409813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.185572 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.770037 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029330 SAMN23019304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473156/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.103344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.863874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.878529 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029331 SAMN23019305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473154/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.726936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.869096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.302613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029332 SAMN23018110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473157/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.567991 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.62805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.469156 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029333 SAMN23015446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473159/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.392382 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.642675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.455957 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029334 SAMN23016161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473190/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.819592 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.309555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.583925 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029335 SAMN23015805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473160/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.320868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.663197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.381544 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029336 SAMN23018999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473162/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.80615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.409451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.999294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029337 SAMN23018998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473163/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.676125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.043161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.627909 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029338 SAMN23018436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210473166/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.944506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.233503 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.399687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029339 SAMN23017952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473169/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.840967 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.74757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.327053 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029340 SAMN23017951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473170/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.234753 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.435556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.225578 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029341 SAMN23015804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473172/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.049494 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.271505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.697296 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029342 SAMN23016615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473171/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.62925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.531393 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.58576 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029343 SAMN23016163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473173/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.22602 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.29193 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.327199 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029344 SAMN23018622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474955/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.335882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.985847 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.583145 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029345 SAMN23018410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474924/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.389517 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.108934 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.00628 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029346 SAMN23015753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474926/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.027688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.517986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.517584 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029347 SAMN23017046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210474925/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.522356 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.8236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.847168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029348 SAMN23016462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474959/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.62587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.599707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.612957 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029349 SAMN23018076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474961/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.979506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.262735 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.29393 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029350 SAMN23018272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210474963/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.776594 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.869552 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.743718 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029351 SAMN23018407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474966/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.78107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.864048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.143091 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029352 SAMN23018273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210474960/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.842298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.30987 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.736086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029353 SAMN23018902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474967/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.72671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.549194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.881973 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029354 SAMN23018901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474968/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.206371 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.48744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.892906 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029355 SAMN23018900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474969/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.954015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.547147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.848174 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029356 SAMN23018898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474971/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.552755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.85529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.982162 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029357 SAMN23018897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474972/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.515281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.760285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.472049 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029358 SAMN23018896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474973/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.262999 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.916243 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.7315 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029359 SAMN23017376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474975/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.520356 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.201951 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.835144 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029360 SAMN23016773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210474974/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.966007 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.822195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.601355 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029361 SAMN23018895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.869376 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.1759 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.390012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029362 SAMN23018406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474978/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.660759 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.355207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.985352 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029363 SAMN23018405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474979/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.599642 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.757097 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.8685155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029364 SAMN23015751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474980/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.78431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.915162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.590229 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029365 SAMN23018404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474982/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.943153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.002478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.654176 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029366 SAMN23016465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474956/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.728025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.199444 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.84447 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029367 SAMN23016464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474957/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.720018 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.468298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.849201 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029368 SAMN23018402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475010/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.781657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.693424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.262473 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029369 SAMN23015625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210474990/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.461927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.077162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.249104 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029370 SAMN23018893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474991/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.69445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.342407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.996891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029371 SAMN23017869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210474992/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.898287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.966854 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.706549 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029372 SAMN23018621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474993/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.297561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.893365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.767415 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029373 SAMN23018892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475018/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.013727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.728454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.994536 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029374 SAMN23018620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474994/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.809696 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.3672695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.984206 lineage/clade name AY.29.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029375 SAMN23016135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474995/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.49999 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.344664 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.660933 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029376 SAMN23018187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210476702/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.399594 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.599082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.139923 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029377 SAMN23018806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476578/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.985222 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.624056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.743032 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029378 SAMN23017687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476579/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.422888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.880745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.82773 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029379 SAMN23017686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476580/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.398363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.463749 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.376867 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029380 SAMN23018805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476706/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.29344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.1428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.277079 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029381 SAMN23015608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476707/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.972887 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.963335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.502493 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029382 SAMN23015606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476710/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.566538 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.955011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.654936 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029383 SAMN23015607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476708/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.175602 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.504362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.91241 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029384 SAMN23015605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476711/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.700153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.652216 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.748187 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029385 SAMN23018804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476712/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.558952 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.617006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.94192 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029386 SAMN23018803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476713/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.514324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.5531225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.762059 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029387 SAMN23017102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476714/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.801687 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.161575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.46381 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029388 SAMN23016096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476715/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.958086 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.863897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.421051 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029389 SAMN23017101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476716/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.50143 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.227022 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.972067 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029390 SAMN23015354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476718/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.02699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.843731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.517683 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029391 SAMN23015604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476717/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.628303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.749188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.456593 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029392 SAMN23015353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476719/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.0397787 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.71909 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 6.954059 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029393 SAMN23015352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476720/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.968224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.24296 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.185238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029394 SAMN23015351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476721/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.418636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.465689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.829494 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029395 SAMN23016094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476724/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.52425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.799898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.746422 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029396 SAMN23015350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476722/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.826637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.3931055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.484443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029397 SAMN23016095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476723/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.614211 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.754066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.658548 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029398 SAMN23015567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210476725/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.922668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.938042 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.56416 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029399 SAMN23015284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210476726/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.8766575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.278269 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.428308 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029400 SAMN23016916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ND-CDC-ASC210476703/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.273814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.183287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.995027 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029401 SAMN23018186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210476704/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.48274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.286833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.532095 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029402 SAMN23017103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476705/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.3543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.776205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.175991 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029403 SAMN23015283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210476731/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.743536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.326517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.282438 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029404 SAMN23015282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210476732/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.882877 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.490671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.102295 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029405 SAMN23017300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476730/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.858949 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.101705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.506116 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029406 SAMN23018571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476733/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.66456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.504852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.836413 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029407 SAMN23016395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210476734/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.682648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.616285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.923973 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029408 SAMN23019360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467059/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.333381 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.634509 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.544745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029409 SAMN23019359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467060/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.3395605 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.426003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.220992 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029410 SAMN23016852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210467066/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.494455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.684586 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.66069 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029411 SAMN23016851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210467067/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source nasal swab geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.486439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.543535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.026754 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029412 SAMN23016541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210467061/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.867306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.723976 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.629822 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029413 SAMN23016540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210467062/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.803062 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.201297 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.707996 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029414 SAMN23019183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467069/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.262238 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.005204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.857071 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029415 SAMN23018164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210467072/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.82329 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.593214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.529652 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029416 SAMN23016824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467073/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.01317 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.499273 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.211596 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029417 SAMN23016823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467074/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.7975235 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.957078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.524729 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029418 SAMN23019182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467075/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.240873 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.67186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.300674 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029419 SAMN23018512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467077/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.857613 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.887745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.237633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029420 SAMN23018355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210467078/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.726845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.957386 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.194817 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029421 SAMN23018354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210467079/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.448284 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.954033 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.662523 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029422 SAMN23018312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210467080/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.515259 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.996864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.399834 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029423 SAMN23016023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210467082/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.894918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.140856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.58249 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029424 SAMN23019365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467049/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.258624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.818216 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.875298 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029425 SAMN23018353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210467083/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.2547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.280249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.155928 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029426 SAMN23018352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210467084/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.883568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.185492 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.595058 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029427 SAMN23016667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467085/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.364803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.442935 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.776217 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029428 SAMN23019364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467050/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.522234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.675962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.697227 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029429 SAMN23016664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.676146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.839298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.26505 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029430 SAMN23018776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467089/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.217459 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.943613 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.102503 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029431 SAMN23018775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.68527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.280493 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.796982 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029432 SAMN23018774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467091/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.326406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.812103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.492281 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029433 SAMN23018773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467092/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.991175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.95342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.415342 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029434 SAMN23018772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467093/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.297267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.436134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.959708 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029435 SAMN23015895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467094/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.95002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.395874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.834425 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029436 SAMN23017090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210467096/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.344173 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.20134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.250046 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029437 SAMN23017004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210467099/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.589737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.658297 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.608727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029438 SAMN23019172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.590498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.2162695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.824808 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029439 SAMN23017003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210467100/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.714928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.860909 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.360191 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029440 SAMN23017403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473550/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.171697 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.667011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.439579 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029441 SAMN23016156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473551/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.86351 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.412039 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.269949 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029442 SAMN23016155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210473552/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.697207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.61061 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.308185 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029443 SAMN23018330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210473553/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.384584 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.609531 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.326815 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029444 SAMN23018971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473687/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.337439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.225485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.50866 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029445 SAMN23018094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473554/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.906805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.982419 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.886171 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029446 SAMN23018093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473555/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.995767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.943645 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.454473 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029447 SAMN23015730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475441/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.7218075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.58384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.454641 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029448 SAMN23018868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475442/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.716205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.16428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.41206 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029449 SAMN23018064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.69885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.117243 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.885164 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029450 SAMN23018063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475444/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.3332214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.894154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.9441504 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029451 SAMN23018062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.957615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.88125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.979908 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029452 SAMN23018390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475446/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.956396 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.721481 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.448417 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029453 SAMN23015949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475447/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.838087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.60385 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.692228 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029454 SAMN23016585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475448/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.114323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.703562 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.822884 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029455 SAMN23016122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475449/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.257948 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.740934 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.913105 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029456 SAMN23018323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210475450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.101843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.11383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.862425 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029457 SAMN23015729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.244059 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.508078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.650543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029458 SAMN23016449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475452/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.328142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.258762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.003967 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029459 SAMN23017805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210475455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.722883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.596375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.540962 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029460 SAMN23019255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475456/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.900422 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.241484 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.678488 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029461 SAMN23019254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.660975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.13407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.108788 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029462 SAMN23017595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210475430/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.42311 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.624798 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.210989 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029463 SAMN23017042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210475459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.44635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.399803 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.461163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029464 SAMN23016931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475431/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.26005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.338253 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.54876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029465 SAMN23015374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475432/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.502962 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.906338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.464495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029466 SAMN23015268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210475483/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.493563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.813508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.864721 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029467 SAMN23018867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475505/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.05984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.314053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.944445 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029468 SAMN23018541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210475506/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.25516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.410049 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.825635 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029469 SAMN23018866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475507/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.694328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.048376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.487883 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029470 SAMN23018865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475508/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.314167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.403054 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.348311 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029471 SAMN23018864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.967258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.87564 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.770214 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029472 SAMN23015348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476771/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.134493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.394436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.753856 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029473 SAMN23018257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210476772/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.089872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.795923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.786251 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029474 SAMN23015672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476774/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.257719 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.976667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.58879 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029475 SAMN23018368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476775/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.35871 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.396751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.2264 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029476 SAMN23016560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476776/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.685293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.75243 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.302671 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029477 SAMN23015347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.268776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.181728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.471132 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029478 SAMN23018800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476780/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.300039 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.310126 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.755488 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029479 SAMN23019406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210476781/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.186884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.010529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.330208 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029480 SAMN23017100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476782/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.8444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.48046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.826021 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029481 SAMN23016426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210476783/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.200985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.73002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.5626335 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029482 SAMN23016745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476756/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.397709 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.14692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.220804 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029483 SAMN23017894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476785/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.115937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.335516 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.285713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029484 SAMN23017822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210476786/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.329636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.799805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.739294 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029485 SAMN23018567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476757/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.753408 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.85195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.712967 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029486 SAMN23018796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476811/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.666023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.151353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.463862 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029487 SAMN23016559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476787/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.798643 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.869053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.751612 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029488 SAMN23018566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476758/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.541515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.750252 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.073528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029489 SAMN23016743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476825/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.588953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.656364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.737173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029490 SAMN23015671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476788/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.992165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.0192375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.912305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029491 SAMN23017801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210476859/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.915353 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.611748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.92976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029492 SAMN23018799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476790/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.95618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.44208 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.380165 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029493 SAMN23015670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476789/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.525646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.713547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.699955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029494 SAMN23018798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476791/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.61968 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.710148 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.240738 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029495 SAMN23017298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476792/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.763445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.013771 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.295355 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029496 SAMN23015669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476793/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.833477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.506178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.90539 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029497 SAMN23017297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476794/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.683053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.854237 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.7106495 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029498 SAMN23017296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476795/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.250547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.783014 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.475446 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029499 SAMN23017295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476796/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.704077 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.129707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.292273 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029500 SAMN23016856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210476797/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.248124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.5374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.627881 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029501 SAMN23016855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210476798/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.91738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.333384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.543991 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029502 SAMN23016854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210476799/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.728036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.809237 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.270659 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029503 SAMN23016088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476800/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.090117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.991427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.737055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029504 SAMN23018758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467476/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.260687 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.536242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.069988 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029505 SAMN23018757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467477/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.602716 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.981329 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.214758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029506 SAMN23018756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467478/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.11077 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.321775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.940887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029507 SAMN23019341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467480/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.34975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.772995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.71611 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029508 SAMN23017266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467481/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.157824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.473558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.21827 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029509 SAMN23017538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.480526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.568872 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.732838 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029510 SAMN23018502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467482/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.5007515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.6591625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.362654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029511 SAMN23018159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210467483/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.797896 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.372502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.248628 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029512 SAMN23017537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467456/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.89416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.590672 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.653017 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029513 SAMN23017536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.627175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.365917 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.316385 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029514 SAMN23018158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210467486/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.193693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.262274 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.999372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029515 SAMN23016660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467487/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.63352 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.934677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.889748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029516 SAMN23017532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467488/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.586486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.795858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.64712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029517 SAMN23017623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210467491/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.30104 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.343082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.24919 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029518 SAMN23017622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210467492/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.612751 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.398764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.65986 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029519 SAMN23017621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210467493/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.658743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.620304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.759098 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029520 SAMN23016231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467494/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.302699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.890493 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.687193 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029521 SAMN23015526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467495/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.930346 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.377838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.91353 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029522 SAMN23015525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467496/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.388077 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.840667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.444172 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029523 SAMN23015524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467497/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.032393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.970287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.856817 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029524 SAMN23017852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210467498/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.580335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.662681 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.975128 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029525 SAMN23017851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210467499/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.422572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.753448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.476494 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029526 SAMN23019131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467501/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.917796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.019428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.541167 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029527 SAMN23015888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467502/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.573924 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.997372 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.796102 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029528 SAMN23018755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467503/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.462267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.436464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.428277 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029529 SAMN23018753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467505/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.765731 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.993517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.345422 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029530 SAMN23018754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467504/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.63695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.706367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.930695 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029531 SAMN23018752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467506/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.309036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.339561 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.127268 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029532 SAMN23016230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467507/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.453009 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.308367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.075215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029533 SAMN23017265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467508/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.69718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.743371 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.582171 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029534 SAMN23016813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.921583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.612331 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.991243 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029535 SAMN23017990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471528/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.320303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.505486 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.095116 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029536 SAMN23019130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467510/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.766819 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.035673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.913504 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029537 SAMN23017989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471529/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.261402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.461523 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.41545 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029538 SAMN23016522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471530/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.255893 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.864686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.498431 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029539 SAMN23017666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210471531/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.151556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.355242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.382838 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029540 SAMN23016194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471263/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.487794 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.821269 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.420101 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029541 SAMN23017494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471264/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.207335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.565079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.82764 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029542 SAMN23018149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471520/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.973394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.72695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.221657 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029543 SAMN23017075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210471545/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.242002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.04727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.272026 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029544 SAMN23015325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210471546/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.553587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.421953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.244588 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029545 SAMN23017074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210471547/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.44844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.510708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.700936 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029546 SAMN23018148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471548/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.532098 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.785998 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.462507 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029547 SAMN23017988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471549/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.852861 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.566037 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.686204 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029548 SAMN23017987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471550/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.143654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.4861355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.304711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029549 SAMN23017986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471551/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.312065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.725931 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.448116 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029550 SAMN23016688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210471552/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.978832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.93831 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.319359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029551 SAMN23016687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210471553/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.5710335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.503069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.273821 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029552 SAMN23016686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210471554/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.1575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.403089 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.22204 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029553 SAMN23015497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471533/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.44181 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.854987 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.219832 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029554 SAMN23017665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210471532/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.937084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.557335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.373535 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029555 SAMN23015496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471534/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.451024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.606449 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.693769 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029556 SAMN23015495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471535/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.330118 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.87988 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.80904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029557 SAMN23015493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471537/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.842242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.215761 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.991257 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029558 SAMN23015494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471536/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.526381 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.600129 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.214148 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029559 SAMN23015492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471538/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.7347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.915783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.712276 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029560 SAMN23016414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210471539/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.420597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.87508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.251358 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029561 SAMN23015491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471541/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.374029 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.22366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.7539835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029562 SAMN23015974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210471543/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.866682 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.458519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.231915 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029563 SAMN23015326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210471544/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.710929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.423216 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.46665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029564 SAMN23015975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210471542/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.740322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.622774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.258371 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029565 SAMN23015324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210471558/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.506082 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.552648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.703537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029566 SAMN23017073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210471559/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.345127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.417265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.270254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029567 SAMN23017493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471560/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.989195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.210428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.731184 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029568 SAMN23015477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471802/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.638792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.61887 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.35363 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029569 SAMN23015476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471803/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.034521 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.97256 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.464106 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029570 SAMN23016846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210471775/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.24834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.660933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.265764 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029571 SAMN23016845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210471776/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.29959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.463924 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.001722 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029572 SAMN23016899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210471777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.908084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.422385 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.384556 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029573 SAMN23017468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471809/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.850025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.29729 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.244051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029574 SAMN23017469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471808/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.654998 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.624169 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.454906 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029575 SAMN23017467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471810/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.298127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.927432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.467197 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029576 SAMN23017466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471811/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.363649 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.756539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.29902 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029577 SAMN23017465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471812/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.916187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.351484 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.079733 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029578 SAMN23015589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210471815/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.468573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.58866 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.342308 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029579 SAMN23015853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471818/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.047121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.6773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.470298 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029580 SAMN23016843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210471813/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.251647 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.413433 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.876774 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029581 SAMN23015852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471819/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.528342 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.351542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.005157 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029582 SAMN23018339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210471820/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.898399 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.420212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.570961 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029583 SAMN23018466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210471821/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.880018 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.686556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.166513 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029584 SAMN23017662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210471824/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.037409 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.7871 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.499273 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029585 SAMN23016985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210471827/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.996267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.916948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.622366 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029586 SAMN23016984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210471828/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.676579 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.499674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.965479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029587 SAMN23016184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210471829/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.742209 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.9165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.981221 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029588 SAMN23016641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210471831/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.958961 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.451754 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.161865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029589 SAMN23016640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210471832/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.272167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.480988 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.264154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029590 SAMN23016639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210471833/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.092826 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.323412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.752292 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029591 SAMN23016638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210471834/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.944965 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.262018 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.789362 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029592 SAMN23016637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210471835/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.831119 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.512315 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.280158 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029593 SAMN23016385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210471806/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.56305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.502645 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.644224 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029594 SAMN23018337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210471837/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.318998 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.58021 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.492308 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029595 SAMN23017470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471807/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.638998 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.905535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.473867 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029596 SAMN23016725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210471842/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.353054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.22828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.853376 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029597 SAMN23017612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210471845/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.400114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.322718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.412075 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029598 SAMN23017973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471844/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.392176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.270006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.453291 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029599 SAMN23015474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471846/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.408843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.299396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.831399 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029600 SAMN23015821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472792/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.877589 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.711209 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.779746 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029601 SAMN23016498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472794/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.489425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.295222 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.167893 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029602 SAMN23015820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472793/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.538664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.027357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.290712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029603 SAMN23018445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472795/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.160049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.644522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.536808 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029604 SAMN23015819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472796/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.465097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.235973 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.82277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029605 SAMN23015818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472797/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.786987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.444324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.232629 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029606 SAMN23015817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472798/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.35857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.746737 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.99717 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029607 SAMN23015816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472799/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.77279 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.788528 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.791538 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029608 SAMN23016074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210472801/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.543499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.330278 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.411663 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029609 SAMN23015826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472774/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.912203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.907112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.127716 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029610 SAMN23015825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472775/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.730051 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.477429 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.719985 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029611 SAMN23017753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210472776/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.392925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.632019 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.824272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029612 SAMN23018443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472805/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.49083 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.868175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.080693 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029613 SAMN23016975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210472806/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.2547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.900335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.141891 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029614 SAMN23015815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472807/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.303019 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.632309 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.339567 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029615 SAMN23018444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472804/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.771742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.296186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.870338 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029616 SAMN23016497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472808/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.20806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.464362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.847053 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029617 SAMN23016034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210472809/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.530718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.907436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.216805 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029618 SAMN23016839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210472810/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.204863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.460342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.360472 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029619 SAMN23017876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210472812/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.788305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.696861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.511198 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029620 SAMN23016838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210472813/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.768248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.107569 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.389442 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029621 SAMN23016496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472814/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.820433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.012945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.709213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029622 SAMN23017065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210472815/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.141533 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.96037 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.66887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029623 SAMN23017444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472816/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.946169 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.989174 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.725588 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029624 SAMN23017064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210472817/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.924786 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.34833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.628984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029625 SAMN23017063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210472818/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.106497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.002949 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.86918 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029626 SAMN23017443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472819/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.454293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.564396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.353979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029627 SAMN23018119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472821/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.447005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.93864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.017397 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029628 SAMN23019024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472822/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.798536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.610192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.248618 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029629 SAMN23019023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472823/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.756262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.311014 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.169992 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029630 SAMN23019316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210472824/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.361395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.469423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.183733 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029631 SAMN23018221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210472826/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.31707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.431646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.630369 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029632 SAMN23017374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475030/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.767871 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.539336 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.958739 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029633 SAMN23016460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475031/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.766113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.88251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.677632 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029634 SAMN23016459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475032/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.948702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.669596 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.271229 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029635 SAMN23015750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475033/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.527624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.761404 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.84746 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029636 SAMN23015749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475034/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.386444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.969896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.10709 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029637 SAMN23017372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475037/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.180807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.037525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.838888 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029638 SAMN23019265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475035/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.828932 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.882923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.123343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029639 SAMN23017152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475038/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.988668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.337725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.967 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029640 SAMN23017151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475039/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.25121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.950344 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.860725 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029641 SAMN23017150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475040/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.668417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.989223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.29472 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029642 SAMN23018891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475043/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.296185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.23159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.41609 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029643 SAMN23019410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210475044/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.676102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.785282 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.286411 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029644 SAMN23015748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475045/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.40609 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.576223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.613604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029645 SAMN23015747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475046/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.354372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.432919 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.049328 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029646 SAMN23018401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475011/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.712401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.786777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.446999 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029647 SAMN23016457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475051/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.9782896 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.423475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.283799 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029648 SAMN23015620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210475111/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.8355875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.392796 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.936074 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029649 SAMN23016133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475052/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.401648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.590836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.401133 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029650 SAMN23017638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210475053/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.688898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.357595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.230347 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029651 SAMN23017925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475054/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.14514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.724712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.514414 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029652 SAMN23016131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.562487 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.308695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.955807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029653 SAMN23018526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210475057/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.233364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.320152 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.873798 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029654 SAMN23015746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475056/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.90943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.91709 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.366814 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029655 SAMN23015745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475059/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.577444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.781384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.366625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029656 SAMN23018074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475060/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.193118 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.806123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.935073 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029657 SAMN23016588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475124/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.624355 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.8684435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.803602 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029658 SAMN23016937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475061/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.478283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.883623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.50857 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029659 SAMN23017148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475079/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.449283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.462033 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.782288 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029660 SAMN23015744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475082/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.179419 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.354843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.475923 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029661 SAMN23016936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475084/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.500683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.699976 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.281678 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029662 SAMN23018399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.095581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.245823 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.354948 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029663 SAMN23018073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475085/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.450964 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.519264 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.346964 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029664 SAMN23018264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210475918/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.551884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.324081 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.152737 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029665 SAMN23017633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210475919/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.984096 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.581865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.37201 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029666 SAMN23018263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210475921/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.824612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.852802 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.826063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029667 SAMN23016256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210475923/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.861246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.449808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.24209 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029668 SAMN23017913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475920/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.355565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.260183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.8673935 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029669 SAMN23015711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475926/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.174921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.870927 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.5708203 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029670 SAMN23016759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475924/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.651222 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.686147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.741508 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029671 SAMN23017632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210475925/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.656847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.281448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.781334 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029672 SAMN23015709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475928/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.029758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.716547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.874313 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029673 SAMN23017912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475929/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.15195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.47708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.980318 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029674 SAMN23019242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475930/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.799046 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.87198 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.439444 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029675 SAMN23017911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475931/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.730171 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.334059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.90591 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029676 SAMN23017703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475932/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.458462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.261251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.02547 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029677 SAMN23017130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475908/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.399329 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.772707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.478788 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029678 SAMN23017129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475909/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.487474 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.649792 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.13817 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029679 SAMN23018850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475935/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.664431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.678879 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.597998 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029680 SAMN23017702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475936/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.907416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.499707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.73805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029681 SAMN23017343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475938/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.51248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.809126 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.963985 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029682 SAMN23016110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475940/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.913998 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.877135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.407812 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029683 SAMN23017701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475939/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.730771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.211637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.779093 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029684 SAMN23017342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475941/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.159943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.322517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.897623 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029685 SAMN23019241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475942/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.707931 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.533713 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.781281 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029686 SAMN23016758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475944/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.843542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.3258 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.869408 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029687 SAMN23016255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210475945/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.951384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.504286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.28083 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029688 SAMN23016757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475947/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.605713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.394487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.58771 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029689 SAMN23015291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210475948/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.182817 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.351685 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.220533 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029690 SAMN23017341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475946/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.621075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.206613 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.255948 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029691 SAMN23017700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475949/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.572442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.1998415 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.51877 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029692 SAMN23017126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475951/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.21894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.220003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.743877 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029693 SAMN23017910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475950/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.5766 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.960241 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.88506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029694 SAMN23015289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210475954/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.458176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.333942 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.694868 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029695 SAMN23015290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210475952/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.7766514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.368402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.731258 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029696 SAMN23018035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476375/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.170998 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.40912 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.60586 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029697 SAMN23018034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476377/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.297525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.215414 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.877723 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029698 SAMN23017692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476378/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.484499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.51329 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.095717 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029699 SAMN23017691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476379/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.542276 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.41037 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.944822 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029700 SAMN23015614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476380/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.491829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.9927 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.670267 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029701 SAMN23017036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210476381/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.840384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.149494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.169647 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029702 SAMN23016569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476382/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.626997 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.39327 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.506162 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029703 SAMN23017315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476384/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.736092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.955208 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.805056 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029704 SAMN23016568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476383/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.808691 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.256668 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.126682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029705 SAMN23017314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476385/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.9869 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.880318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.948082 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029706 SAMN23018380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476387/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.139812 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.785841 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.36765 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029707 SAMN23017904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476388/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.252887 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.366078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.789649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029708 SAMN23015613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476389/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.145947 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.983065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.458393 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029709 SAMN23015612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476390/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.385202 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.027903 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.6171 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029710 SAMN23017903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476391/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.330572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.806318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.785694 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029711 SAMN23017902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476392/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.21021 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.468265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.445943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029712 SAMN23017630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210476393/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.185507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.343594 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.970621 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029713 SAMN23018315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210476368/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.979987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.487346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.282876 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029714 SAMN23018821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476369/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.918366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.741161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.375585 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029715 SAMN23019227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476397/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.618004 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.933609 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.375749 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029716 SAMN23015925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210476398/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.467823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.731066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.78179 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029717 SAMN23018033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476405/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.264757 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.395412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.585396 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029718 SAMN23015692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476406/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.198536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.052362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.639122 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029719 SAMN23015691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476407/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.81254 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.000296 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.458977 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029720 SAMN23015362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476408/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.236319 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.255487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.995584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029721 SAMN23017312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476410/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.724676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.50432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.739447 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029722 SAMN23017311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476411/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.75296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.349352 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.543743 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029723 SAMN23017313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476409/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.655743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.71133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.10985 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029724 SAMN23016397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210476412/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.922322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.207517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.3346667 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029725 SAMN23017803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210476414/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.56367 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.451296 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.647844 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029726 SAMN23017901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476413/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.571487 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.219315 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.705614 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029727 SAMN23018379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.8381195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.18374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.753765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029728 SAMN23016208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468676/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.13882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.349031 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.493359 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029729 SAMN23016016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469955/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.285261 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.731325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.189466 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029730 SAMN23016207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468678/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.142996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.05007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.210585 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029731 SAMN23016206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468681/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.008461 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.63149 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.078747 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029732 SAMN23017814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210468685/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.960937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.054771 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.002251 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029733 SAMN23016205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468682/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.978727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.421409 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.516004 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029734 SAMN23019095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468654/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.448895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.890238 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.608639 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029735 SAMN23019094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468656/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.35507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.734053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.628117 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029736 SAMN23016204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468686/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.193586 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.336252 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.024605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029737 SAMN23019093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468657/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.438406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.023394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.196934 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029738 SAMN23016201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468689/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.018946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.580141 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.916502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029739 SAMN23016803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210468690/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.822611 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.424619 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.312605 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029740 SAMN23018481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468691/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.170937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.887106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.960344 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029741 SAMN23018479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468693/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.839773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.510914 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.363281 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029742 SAMN23016802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210468694/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.040857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.489578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.029257 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029743 SAMN23016801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210468695/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.9007225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.960976 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.059752 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029744 SAMN23018478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468697/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.818523 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.922571 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.896929 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029745 SAMN23018476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468699/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.208804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.296953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.800032 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029746 SAMN23016021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469945/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.784541 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.952981 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.884448 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029747 SAMN23016020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469947/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.609019 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.334775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.839123 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029748 SAMN23018152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210469948/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.302537 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.013035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.326033 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029749 SAMN23016009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469981/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.367037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.82894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.966516 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029750 SAMN23016018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469950/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.370455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.90472 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.737017 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029751 SAMN23017999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210469951/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.910547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.514423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.5980835 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029752 SAMN23016017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469952/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.795181 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.795206 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.852345 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029753 SAMN23018736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210469953/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.403006 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.159842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.713491 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029754 SAMN23016004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469987/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.382868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.704803 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.036535 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029755 SAMN23016993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210469956/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.438076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.746917 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.237305 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029756 SAMN23015872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210469957/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.576311 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.821037 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.493369 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029757 SAMN23018307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210469958/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.284994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.276199 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.279777 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029758 SAMN23018306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210469959/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.649066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.478752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.731481 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029759 SAMN23018733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210469994/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.264035 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.512886 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.292518 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029760 SAMN23017066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210472802/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.305419 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.68743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.498515 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029761 SAMN23015957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210472803/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.688871 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.589554 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.622208 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029762 SAMN23017966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472830/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.425846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.4373045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.416678 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029763 SAMN23017965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472831/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.048609 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.729872 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.698405 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029764 SAMN23015813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472832/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.292799 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.37417 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.50404 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029765 SAMN23016719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210472833/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.630661 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.736986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.216166 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029766 SAMN23015457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472834/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.425167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.834829 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.925589 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029767 SAMN23015812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472835/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.748993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.31242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.765448 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029768 SAMN23016626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210472836/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.373078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.589141 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.590958 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029769 SAMN23016974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210472837/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.725488 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.359283 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.77817 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029770 SAMN23015456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472838/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.289133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.852461 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.371791 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029771 SAMN23015455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472839/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.090207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.925114 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.559194 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029772 SAMN23018118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472840/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.45026 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.622669 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.904883 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029773 SAMN23017062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210472841/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.6707835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.169894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.558988 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029774 SAMN23018117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472842/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.20794 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.172323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.9714 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029775 SAMN23017210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472844/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.178583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.691017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.609716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029776 SAMN23017209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472845/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.709943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.444116 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.889812 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029777 SAMN23017211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472843/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.683666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.664753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.530115 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029778 SAMN23017964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472846/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.111033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.842219 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.70268 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029779 SAMN23017442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472848/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.327085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.561121 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.626858 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029780 SAMN23017441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472849/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.406591 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.883379 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.544441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029781 SAMN23017440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472850/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.407389 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.010654 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.974577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029782 SAMN23018220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210472827/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.184204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.4748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.193996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029783 SAMN23019224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476533/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.683937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.526861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.70961 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029784 SAMN23015679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476555/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.443335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.949888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.839486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029785 SAMN23016396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210476554/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.717449 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.487891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.291705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029786 SAMN23018019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476556/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.454395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.889505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.081083 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029787 SAMN23017865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210476561/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.702225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.056284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.81817 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029788 SAMN23016923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210476563/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.448214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.61281 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.229488 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029789 SAMN23017864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210476562/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.819805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.060167 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.688047 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029790 SAMN23016562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476564/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.266896 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.949493 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.669852 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029791 SAMN23016861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210476565/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.550554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.176468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.64431 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029792 SAMN23015662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210344357/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.773106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.880186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.948837 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029793 SAMN23015923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210343678/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.193842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.638596 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.083332 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029794 SAMN23018361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210343899/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.758707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.621994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.193361 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029795 SAMN23015552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210343895/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.248171 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.663169 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.944965 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029796 SAMN23018521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210343898/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.8810215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.915754 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.517696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029797 SAMN23018362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210343701/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.243019 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.532529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.411716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029798 SAMN23017588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210343695/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.38372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.016083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.743287 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029799 SAMN23016392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210343696/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.881353 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.98867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.652248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029800 SAMN23016244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210343693/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.201313 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.270557 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.420195 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029801 SAMN23015551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210460857/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.225706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.05706 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.793781 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029802 SAMN23018008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210363359/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.327852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.098217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.671503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029803 SAMN23018009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210363358/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.74577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.596444 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.389836 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029804 SAMN23018010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210363355/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.305856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.809967 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.525193 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029805 SAMN23016555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210363354/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.393002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.559456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.3282 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029806 SAMN23018182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210363351/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.755155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.771408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.751776 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029807 SAMN23017800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210363352/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.58713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.282242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.452755 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029808 SAMN23017290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210344387/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.535925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.760479 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.70169 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029809 SAMN23019214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210344381/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.210231 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.424637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.978857 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029810 SAMN23019215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210344380/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.669409 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.80472 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.7683 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029811 SAMN23018183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210344375/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.508608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.43708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.44107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029812 SAMN23018011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210344374/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.576953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.82723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.204607 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029813 SAMN23018012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210344373/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.438297 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.847628 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.738409 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029814 SAMN23017587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210344368/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.268704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.664967 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.477023 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029815 SAMN23018255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210344367/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.374315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.093632 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.386953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029816 SAMN23019216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210344365/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.852518 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.618015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.116331 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029817 SAMN23015922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210344362/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.74016 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.372845 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.885357 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029818 SAMN23015661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210344358/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.320406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.516933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.165163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029819 SAMN23017586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210364391/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.837687 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.75505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.707802 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029820 SAMN23018181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210460838/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.897137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.057547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.807856 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029821 SAMN23016243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210460840/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.275375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.538592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8574295 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029822 SAMN23018007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210460842/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.603963 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.423279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.724824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029823 SAMN23019213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210460844/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.505995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.507965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.276037 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029824 SAMN23016996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210468064/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.338919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.256205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.321955 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029825 SAMN23016221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468063/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.832979 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.418853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.379394 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029826 SAMN23019421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210468065/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.17731 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.925173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.959532 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029827 SAMN23018496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468066/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.771845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.665249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.188387 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029828 SAMN23018741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467660/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.810308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.558409 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.73686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029829 SAMN23019105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467659/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.287114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.211667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.7029295 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029830 SAMN23018495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468068/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.699633 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.900515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.829824 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029831 SAMN23016652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210468069/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.327511 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.439556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.426169 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029832 SAMN23016651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210468070/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.924366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.615543 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.371399 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029833 SAMN23016910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210468071/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.627867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.807646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.383095 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029834 SAMN23015512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210468073/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.632324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.488005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.875542 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029835 SAMN23016811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210468074/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.039309 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.159103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.100512 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029836 SAMN23015598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210468076/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.36616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.620487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.577269 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029837 SAMN23018494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468077/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.145597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.702513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.542328 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029838 SAMN23018493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468078/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.230597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.989498 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.662916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029839 SAMN23015878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210468082/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.808985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.211723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.963964 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029840 SAMN23018492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210468080/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.756603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.460636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.542717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029841 SAMN23018345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210468081/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.862181 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.853618 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.986098 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029842 SAMN23018344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210468083/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.116274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.700758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.181393 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029843 SAMN23015332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210468084/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.837635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.35324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.02908 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029844 SAMN23015331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210468085/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.141039 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.306793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.13118 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029845 SAMN23016994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210468086/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.589417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.669935 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.55058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029846 SAMN23015876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210468089/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.08752 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.468279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.577726 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029847 SAMN23015877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210468088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.452332 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.295967 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.44749 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029848 SAMN23017776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210468091/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.092901 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.760034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.618005 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029849 SAMN23017887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210468090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.589921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.080645 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.391662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029850 SAMN23017886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210468119/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.800617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.128836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.627501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029851 SAMN23015875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210468092/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.82256 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.736572 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.701687 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029852 SAMN23016995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210468067/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.164906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.57986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.35418 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029853 SAMN23017247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468097/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.47737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.397636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.163486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029854 SAMN23017246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468098/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.598804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.177509 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.603133 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029855 SAMN23016723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210471952/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.490524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.850605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.52568 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029856 SAMN23016722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210471953/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.36308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.752262 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.468925 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029857 SAMN23016649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210468124/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.289315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.240484 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.890148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029858 SAMN23016721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210471954/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.05138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.325424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.877099 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029859 SAMN23019061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471955/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.3308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.96454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.964863 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029860 SAMN23019060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471965/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.837729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.225822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029861 SAMN23015471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471964/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.758049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.928502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.796291 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029862 SAMN23015470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471968/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.197773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.849512 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.616678 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029863 SAMN23019059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471966/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.439637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.654922 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.61529 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029864 SAMN23015846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471969/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.692528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.982037 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.576918 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029865 SAMN23015469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471970/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.411462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.6051445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.695423 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029866 SAMN23019058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471971/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.28818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.330069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.41459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029867 SAMN23019057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471972/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.227219 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.51432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.281101 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029868 SAMN23015845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471974/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.738073 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.771856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.52512 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029869 SAMN23017757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471975/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.505825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.987765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.9949 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029870 SAMN23017756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.651809 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.805568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.614913 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029871 SAMN23018461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210471977/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.501038 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.880857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.510178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029872 SAMN23017972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471978/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.28061 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.746498 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.96676 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029873 SAMN23016840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210471947/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.90735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.68647 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.6746 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029874 SAMN23016795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210471948/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.83107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.190073 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.14939 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029875 SAMN23018136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471986/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.107033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.60286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.520569 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029876 SAMN23016983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210471987/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.165333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.806898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.739548 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029877 SAMN23018460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210471988/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.829879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.986154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.630381 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029878 SAMN23016896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210471991/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.311253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.208527 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.953527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029879 SAMN23016635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210471992/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.689909 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.436395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.367437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029880 SAMN23015844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471993/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.54908 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.119568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.467634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029881 SAMN23018135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471994/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.3527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.384983 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.349913 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029882 SAMN23018336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210471995/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.492523 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.880655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.1290245 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029883 SAMN23016510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471996/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.922454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.37494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.096056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029884 SAMN23016895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210471997/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.224022 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.291876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.073431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029885 SAMN23016634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210471998/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.646963 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.713423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.323364 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029886 SAMN23017459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471999/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.793737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.235068 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.825259 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029887 SAMN23017458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472000/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.41294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.820667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.38557 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029888 SAMN23015830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472310/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 33.193424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 35.219635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 32.90273 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029889 SAMN23016172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472314/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.784636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.839819 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.0134 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029890 SAMN23017754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210472417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.6326885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.136741 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.145421 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029891 SAMN23015458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.55835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.761745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.46968 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029892 SAMN23018127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472269/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.88488 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.571627 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.474825 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029893 SAMN23018125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472271/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.83851 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.936012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.765662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029894 SAMN23018126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472270/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.812603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.898268 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.648369 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029895 SAMN23017215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.233225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.008467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.29957 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029896 SAMN23018692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472422/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.507904 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.75982 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.23627 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029897 SAMN23018693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472420/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.63451 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.666922 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.543344 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029898 SAMN23018691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.881418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.825727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.269562 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029899 SAMN23015586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210472425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.143784 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.847459 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.166526 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029900 SAMN23015642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210472471/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.184995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.451752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.797769 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029901 SAMN23018288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210472426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.910725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.5133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.243011 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029902 SAMN23018690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472424/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.798674 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.804014 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.906925 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029903 SAMN23018287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210472428/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.712645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.644565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.764631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029904 SAMN23018123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472431/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.796407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.513282 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.619734 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029905 SAMN23018124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472430/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.586043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.223024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.134372 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029906 SAMN23019027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472478/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.78806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.006432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.32539 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029907 SAMN23016171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472432/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.870243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.639677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.538245 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029908 SAMN23016170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472433/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.743814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.712482 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.22942 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029909 SAMN23015965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210472436/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.51877 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.858751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.712397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029910 SAMN23015964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210472437/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.924618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.989485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.070833 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029911 SAMN23018223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210472483/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.538698 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.372065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.58801 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029912 SAMN23015963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210472438/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.59418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.452984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.641113 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029913 SAMN23015960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210472443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.741364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.588604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.38023 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029914 SAMN23015962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210472439/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.411678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.612143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.222755 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029915 SAMN23015959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210472445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.714182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.080029 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.756472 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029916 SAMN23017214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472489/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.67924 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.274813 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.871172 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029917 SAMN23018448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472446/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.108807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.527365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.487071 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029918 SAMN23015958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210472450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.320831 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.373518 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.598577 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029919 SAMN23016502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472454/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.800837 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.315191 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.96431 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029920 SAMN23016881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210474382/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.65482 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.246339 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.763169 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029921 SAMN23018277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210474384/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.48897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.117062 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.918835 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029922 SAMN23018276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210474385/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.957838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.207918 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.911778 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029923 SAMN23018087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474388/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.950127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.955837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.912504 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029924 SAMN23019281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474389/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.9180765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.000534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.352119 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029925 SAMN23016405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210474390/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.653807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.19552 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.623302 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029926 SAMN23018088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474386/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.790182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.361681 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.312518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029927 SAMN23019277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.879747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.392094 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.1163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029928 SAMN23016472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474392/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.346321 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.057137 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.947794 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029929 SAMN23018932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474391/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.990249 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.472342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.923199 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029930 SAMN23017170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474393/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.692384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.649822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.998564 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029931 SAMN23017169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474395/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.337894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.57718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.675385 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029932 SAMN23018931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474397/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.88777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.318813 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.633142 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029933 SAMN23018643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474396/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.672678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.495531 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.215805 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029934 SAMN23018086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474398/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.277735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.980238 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.818084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029935 SAMN23019280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474399/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.125153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.986103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.116217 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029936 SAMN23017168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474402/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.175043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.853626 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.460236 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029937 SAMN23019279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474401/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.211866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.979782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.922031 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029938 SAMN23018930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474403/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.103062 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.766249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.25375 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029939 SAMN23018420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474357/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.843534 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.612314 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.268311 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029940 SAMN23018929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474408/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.136513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.872618 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.641747 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029941 SAMN23017605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210474409/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.508913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.880173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.935816 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029942 SAMN23016836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210474411/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.49085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.321165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.123623 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029943 SAMN23016837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210474410/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.763367 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.841644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.938354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029944 SAMN23015302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210474412/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.817648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.83706 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.3695 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029945 SAMN23016680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210474413/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.996384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.617706 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.958721 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029946 SAMN23016679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210474415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.624159 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.14059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.430933 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029947 SAMN23016145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474447/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.01521 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.623236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.168444 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029948 SAMN23015632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210474417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.507284 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.376649 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.716558 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029949 SAMN23019278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474418/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.736353 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.857292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.700161 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029950 SAMN23019276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474420/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.3133335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.506192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.566899 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029951 SAMN23019275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474421/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.536255 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.933153 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.693976 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029952 SAMN23016815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467374/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.25843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.47577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.737656 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029953 SAMN23016814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467375/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.475498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.959064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.911898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029954 SAMN23016998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210467376/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.169022 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.14604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.860853 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029955 SAMN23016535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210467377/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.966854 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.41297 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.2042675 lineage/clade name AY.45 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029956 SAMN23016534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210467378/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.72415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.452974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.677701 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029957 SAMN23019141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467379/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.477322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.804829 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.19321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029958 SAMN23016235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467356/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.855347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.403631 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.16923 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029959 SAMN23016234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467357/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.510048 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.352888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.005798 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029960 SAMN23016233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467358/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.376739 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.296274 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.158014 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029961 SAMN23017272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467384/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.569666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.174875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.250053 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029962 SAMN23019138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467383/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.732893 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.927119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.960448 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029963 SAMN23017271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467385/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.384485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.903393 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.369184 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029964 SAMN23015892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467387/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.492891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.731535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.612547 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029965 SAMN23015893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467386/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.543554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.421965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.708214 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029966 SAMN23017550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467389/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.650389 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.901035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.670052 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029967 SAMN23018504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467392/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.960924 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.14566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.16118 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029968 SAMN23019137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467394/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.007257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.59226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.920475 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029969 SAMN23017815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210467395/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.301504 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.555399 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.486921 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029970 SAMN23015530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467396/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.376698 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.903414 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.683939 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029971 SAMN23015529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467397/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.965001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.193902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.62529 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029972 SAMN23015528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467398/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.146805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.687032 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.200646 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029973 SAMN23015335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210467400/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.143879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.176046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.787245 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029974 SAMN23015334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210467401/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.806829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.55883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.34605 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029975 SAMN23018348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210467402/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.81621 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.49901 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.321236 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029976 SAMN23018769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467403/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.948534 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.6792345 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.441668 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029977 SAMN23018768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467404/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.582094 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.532604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.323397 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029978 SAMN23016732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210467405/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.937405 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.615505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.73622 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029979 SAMN23016731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210467406/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.0540285 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.6219635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.966125 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029980 SAMN23016730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210467407/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.30038 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.689686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.73538 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029981 SAMN23019140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467380/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.369827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.267026 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.038785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029982 SAMN23019139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467381/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.13817 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.467016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.832164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029983 SAMN23017943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473486/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.269703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.494661 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.530245 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029984 SAMN23018311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210467411/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.810579 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.396491 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.755878 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029985 SAMN23018097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473488/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.703806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.305037 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.871326 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029986 SAMN23017942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473487/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.741663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.806406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.16316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029987 SAMN23017185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473489/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.200351 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.971458 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.643826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029988 SAMN23017184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473490/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.656115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.65002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.14446 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029989 SAMN23018980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473491/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.356707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.639424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.738349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029990 SAMN23016484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.735159 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.523945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.836197 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029991 SAMN23016483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473463/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.659916 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.770004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.032639 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029992 SAMN23018977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473495/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.886307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.442877 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.654419 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029993 SAMN23018211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473464/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.676233 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.721642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.06847 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029994 SAMN23015636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210473496/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.440557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.732187 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.603664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029995 SAMN23019427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210473498/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.757426 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.458639 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.27889 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029996 SAMN23018096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473499/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.180906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.100699 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.253558 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029997 SAMN23015635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210473497/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.150839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.187496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.768991 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029998 SAMN23017811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210473500/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.776627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.332516 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.472918 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11029999 SAMN23017810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210473501/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.717134 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.180752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.789984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030000 SAMN23016482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473502/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.242472 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.181313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.769096 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030001 SAMN23016481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473503/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.667665 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.640771 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.418148 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030002 SAMN23016480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473504/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.4876513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.275205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.159144 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030003 SAMN23017057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210473506/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.278929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.438906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.609463 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030004 SAMN23017056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210473507/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.743744 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.640184 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.607533 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030005 SAMN23017414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.736376 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.615416 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.416539 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030006 SAMN23017941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473511/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.216057 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.379833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.04434 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030007 SAMN23015793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473510/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.497412 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.826644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.085582 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030008 SAMN23017940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473512/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.611387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.44284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.555851 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030009 SAMN23015792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210473513/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.135467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.221539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.02803 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030010 SAMN23015413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473514/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.571255 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.00034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.770515 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030011 SAMN23019297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.4798765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.249404 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.901445 lineage/clade name AY.29.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030012 SAMN23016955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210473539/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.812431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.625025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.999504 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030013 SAMN23018666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473516/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.811007 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.745569 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.500964 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030014 SAMN23018979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473493/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.531258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.254642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.49559 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030015 SAMN23018665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473517/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.73907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.96064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.488861 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030016 SAMN23017390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.694263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.941658 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.375689 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030017 SAMN23019274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474422/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.638716 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.401487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.334216 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030018 SAMN23018928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.53882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.775286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.736614 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030019 SAMN23018926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.456823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.881857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.62736 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030020 SAMN23017808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210474426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.190337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.369422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.401022 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030021 SAMN23018921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474463/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.388186 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.746013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.506214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030022 SAMN23018927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474424/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.097689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.917908 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.66636 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030023 SAMN23016880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210474427/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.518864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.65195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.201932 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030024 SAMN23015391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474404/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.772617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.362232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.23245 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030025 SAMN23015631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210474433/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.2417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.69247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.310515 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030026 SAMN23016879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210474429/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.9686 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.510092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.546698 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030027 SAMN23018085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474405/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.344292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.793766 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.832337 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030028 SAMN23018084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474406/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.79237 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.988081 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.607317 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030029 SAMN23016942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474438/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.332669 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.917541 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.431471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030030 SAMN23016144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474479/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.492014 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.538485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.67775 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030031 SAMN23016941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474439/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.778587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.712364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.307173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030032 SAMN23016779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210474443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.17886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.826487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.302013 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030033 SAMN23015301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210474444/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.473196 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.445322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.592987 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030034 SAMN23016147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.507313 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.235622 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.684555 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030035 SAMN23016146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474446/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.875603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.51249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.199911 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030036 SAMN23018640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474485/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.36216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.980364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.738817 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030037 SAMN23017935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474448/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.6318655 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.1178875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.33551 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030038 SAMN23016590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210474449/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.58368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.8864355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.632978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030039 SAMN23015770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.332249 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.541334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.887484 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030040 SAMN23017741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474454/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.123439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.199448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.427073 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030041 SAMN23017163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474493/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.321865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.198975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.84558 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030042 SAMN23018924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.852188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.5592375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.512085 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030043 SAMN23018925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.484722 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.381952 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.647148 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030044 SAMN23018922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.290222 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.79644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.211412 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030045 SAMN23018923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474461/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.744968 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.21326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.417526 lineage/clade name AY.4.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030046 SAMN23018083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474465/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.816946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.295142 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.248827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030047 SAMN23015769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474466/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.636917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.412811 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.169182 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030048 SAMN23016833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210475760/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.8924465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.168343 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.131357 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030049 SAMN23019408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210475791/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.54688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.740181 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.710983 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030050 SAMN23017040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210475762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.939165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.396591 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.433353 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030051 SAMN23016046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210475761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.698711 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.186012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.194544 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030052 SAMN23018602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475763/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.134218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.168433 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.79078 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030053 SAMN23015944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475764/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.256054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.077879 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.650035 lineage/clade name AY.4.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030054 SAMN23018854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475765/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.860484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.664199 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.558232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030055 SAMN23016443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475740/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.524775 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.547538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.29266 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030056 SAMN23016114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475741/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.693867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.584352 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.778553 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030057 SAMN23018318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210475742/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.07071 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.512426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.338929 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030058 SAMN23017345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475770/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.967937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.170563 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.025663 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030059 SAMN23018052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.47566 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.66868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.567286 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030060 SAMN23018600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475776/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.486559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.944523 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.139036 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030061 SAMN23018384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475778/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.746826 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.184454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.620152 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030062 SAMN23015942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475781/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.12532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.016077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.218792 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030063 SAMN23018051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475779/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.70473 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.986505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.831522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030064 SAMN23019244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475837/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.5023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.481786 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.917511 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030065 SAMN23015941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475783/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.777983 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.003814 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.805881 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030066 SAMN23017594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210475782/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.861649 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.352797 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.216267 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030067 SAMN23018599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475784/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.827944 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.674168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.22791 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030068 SAMN23017592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210475842/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.148135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.674822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.5719185 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030069 SAMN23017825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210475786/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.584438 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.893904 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.626731 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030070 SAMN23017593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210475790/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.00231 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.371822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.262531 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030071 SAMN23015940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475787/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.695208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.885396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.950655 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030072 SAMN23016112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475788/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.318056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.959427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.050745 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030073 SAMN23019245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475792/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.2044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.881263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.537471 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030074 SAMN23018597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475793/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.9394245 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.768794 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.55505 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030075 SAMN23017824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210475794/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.336591 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.003672 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.185581 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030076 SAMN23015939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475795/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.157206 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.300463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.89774 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030077 SAMN23015938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475797/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.114155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.513819 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.46781 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030078 SAMN23017346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475767/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.928573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.296746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.13725 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030079 SAMN23015555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WA-CDC-ASC210475798/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.677542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.744068 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.570133 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030080 SAMN23019212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210460849/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.903775 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.226971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.744574 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030081 SAMN23019211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210460850/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.690681 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.321812 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.964277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030082 SAMN23016554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210461313/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.889889 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.004025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.500406 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030083 SAMN23017585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210461315/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.231542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.906719 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.674964 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030084 SAMN23018180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210461318/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.543441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.884982 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.710655 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030085 SAMN23019389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210461323/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.732448 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.666123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.112836 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030086 SAMN23019388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210461324/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.174675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.254186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.963196 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030087 SAMN23019390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210461322/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.240267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.239697 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.754568 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030088 SAMN23018179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210461335/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.429192 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.01219 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.248119 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030089 SAMN23018178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210461336/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.917767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.669084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.565856 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030090 SAMN23017584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210461331/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.6916895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.535327 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.757886 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030091 SAMN23018177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210461342/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.25418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.883224 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.81282 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030092 SAMN23018519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210461337/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.913303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.850811 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.682169 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030093 SAMN23015550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210461347/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.773212 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.86657 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.517363 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030094 SAMN23018518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210461348/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.376091 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.143578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.865906 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030095 SAMN23019210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210461352/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.155025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.26407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.403511 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030096 SAMN23019209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210461358/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.80205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.51252 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.423374 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030097 SAMN23015921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210461364/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.251785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.30973 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.211794 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030098 SAMN23015920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210461365/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.521922 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.165897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.3801365 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030099 SAMN23015919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210461366/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.800385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.9786005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.273968 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030100 SAMN23015918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210461367/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.493113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.655998 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.348711 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030101 SAMN23016553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210461369/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.589032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.354069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.956752 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030102 SAMN23017583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210461372/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.965095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.756398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.9892435 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030103 SAMN23018520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210460859/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.685849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.556581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.252488 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030104 SAMN23017581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210461390/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.452234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.189507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.546753 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030105 SAMN23017580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210461391/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.634805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.002538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.6110935 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030106 SAMN23015916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210461381/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.0087385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.543135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.471577 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030107 SAMN23018176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210461478/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.168734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.778975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.389517 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030108 SAMN23018175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210461482/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.700239 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.164364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.759 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030109 SAMN23018174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210461484/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.179714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.463173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.067371 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030110 SAMN23018173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210461485/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.996943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.929422 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030111 SAMN23018172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210461486/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.88943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.773188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.781932 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030112 SAMN23017245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468099/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.461106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.706147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.124323 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030113 SAMN23017243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468101/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.522197 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.655701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.088516 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030114 SAMN23017508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210468102/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.377306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.392405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.734734 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030115 SAMN23017244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468100/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.100524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.323196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.678184 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030116 SAMN23019104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210468130/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-13 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.633793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.345728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.765196 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030117 SAMN23017242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468103/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.654545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.750628 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.866491 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030118 SAMN23017241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210468104/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.772324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.788386 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.104076 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030119 SAMN23017134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475556/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.52763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.783125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.411366 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030120 SAMN23018538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210475584/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.428507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.488781 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.599865 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030121 SAMN23018385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475586/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.405838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.893179 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.987934 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030122 SAMN23015373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475594/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.377153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.852452 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.769939 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030123 SAMN23017133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475595/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.103825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.459659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.900153 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030124 SAMN23018059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475597/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.460909 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.647797 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.173796 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030125 SAMN23018321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210475598/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.169321 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.225962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.842451 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030126 SAMN23018060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475596/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.383701 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.831938 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.517858 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030127 SAMN23019249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475599/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.340729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.622566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.586054 lineage/clade name AY.45 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030128 SAMN23017132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475626/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.904516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.986294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.8744335 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030129 SAMN23017355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475702/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.46849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.002962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.415848 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030130 SAMN23019248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475703/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.716593 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.29317 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.886084 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030131 SAMN23015722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475705/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.213049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.453629 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.593111 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030132 SAMN23017354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475706/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.68441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.280886 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.643159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030133 SAMN23016120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475707/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.765274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.005248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.656019 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030134 SAMN23016119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475708/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.667467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.92619 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.210634 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030135 SAMN23016118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475710/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.318113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.077515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.6878395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030136 SAMN23015721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475709/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.3855095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.465438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.191898 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030137 SAMN23017353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475713/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.080208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.498585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.36857 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030138 SAMN23019409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210475711/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.128927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.833411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.251189 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030139 SAMN23015948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475714/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.176477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.35392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.10313 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030140 SAMN23016447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475715/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.457514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.535001 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.697421 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030141 SAMN23018058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475716/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.2301445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.445734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.715796 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030142 SAMN23019247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475717/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.426128 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.358762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.607383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030143 SAMN23018322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210475583/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.970242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.841312 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.399323 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030144 SAMN23018320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210475720/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.407509 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.354782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.176718 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030145 SAMN23018057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475719/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.787748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.867966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.142818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030146 SAMN23018056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475721/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.821848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.331491 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.798191 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030147 SAMN23017015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210475722/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.81662 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.006414 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.321657 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030148 SAMN23017352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475723/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.61397 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.83195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.40141 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030149 SAMN23016445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475724/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.72358 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.713154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.31182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030150 SAMN23017569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210466612/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.854576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.405323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.0438175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030151 SAMN23018251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210466611/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.754883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.982546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.49456 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030152 SAMN23016117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475725/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.773579 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.65172 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.071711 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030153 SAMN23017568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210466613/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.449858 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.298979 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.00337 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030154 SAMN23018250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210466614/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.178387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.363527 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.758781 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030155 SAMN23017567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210466617/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.713648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.751056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.523129 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030156 SAMN23017566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210466618/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.384155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.240246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.80212 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030157 SAMN23018778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210466625/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.58728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.7313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.155441 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030158 SAMN23018777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210466626/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.104468 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.746797 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.47282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030159 SAMN23017565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210466619/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.13581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.635357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.17588 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030160 SAMN23015899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466629/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.197107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.875257 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.461214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030161 SAMN23015898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466630/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.235298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.639704 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.241681 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030162 SAMN23017862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210466631/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.3189 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.7208 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.279848 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030163 SAMN23016668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210466599/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.013864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.711055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.945492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030164 SAMN23017791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466600/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.620907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.97684 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.344784 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030165 SAMN23016735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210466601/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.518766 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.483015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.458528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030166 SAMN23018356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210466635/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.97075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.868328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.506842 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030167 SAMN23017858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210466636/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.497482 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.855838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.281588 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030168 SAMN23017859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210466634/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.470816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.963066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.461145 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030169 SAMN23017857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210466637/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.572162 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.239514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.499428 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030170 SAMN23017790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466705/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.640085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.201149 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.869778 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030171 SAMN23017789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466706/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.275759 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.657831 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.350106 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030172 SAMN23017788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466707/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.7231455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.189213 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.273437 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030173 SAMN23017787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466709/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.219141 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.225853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.86691 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030174 SAMN23017627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210466710/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.903824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.77683 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.291628 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030175 SAMN23015659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210466711/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.874767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.042871 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.007518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030176 SAMN23017786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466715/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.632788 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.9118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.940321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030177 SAMN23015897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466714/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.531547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.480812 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.453897 lineage/clade name AY.45 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030178 SAMN23019194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466718/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.468711 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.883774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.318911 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030179 SAMN23019193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466719/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.948376 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.758643 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.294442 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030180 SAMN23017091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210466720/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.150589 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.522247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.457524 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030181 SAMN23018165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210466721/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.830071 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.625751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.604873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030182 SAMN23019192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466722/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.521757 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.138432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.921644 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030183 SAMN23017661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210471888/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.80541 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.352583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.51894 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030184 SAMN23019066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471889/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.971941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.440489 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.542953 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030185 SAMN23016056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210471871/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.85325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.362179 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.756686 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030186 SAMN23016055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210471872/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.693758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.299496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.86495 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030187 SAMN23017758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471946/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.95519 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.919773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.536785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030188 SAMN23017611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210471895/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.285261 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.753927 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.275545 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030189 SAMN23016054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210471873/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.230825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.425053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.975067 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030190 SAMN23017463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471899/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.333891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.702657 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.198399 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030191 SAMN23017462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471900/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.838104 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.512419 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.414062 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030192 SAMN23017461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471902/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.699772 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.877756 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.574062 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030193 SAMN23019064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471925/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.443167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.615261 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.39424 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030194 SAMN23019063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471926/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.732515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.282583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.53127 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030195 SAMN23016724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210471924/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.370776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.32742 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.128391 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030196 SAMN23019062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471928/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.719194 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.523218 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.693788 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030197 SAMN23017030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210471930/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.335099 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.344847 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.352234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030198 SAMN23017760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471929/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.340237 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.936094 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.749603 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030199 SAMN23017029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210471931/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.254669 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.611539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.761402 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030200 SAMN23017660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210471936/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.92411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.460764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.2424 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030201 SAMN23017028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210471932/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.603929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.773882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.547673 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030202 SAMN23016511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471937/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.770632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.401015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.276996 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030203 SAMN23017460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471941/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.955526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.684405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.786136 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030204 SAMN23016842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210471940/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.493956 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.154049 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.580978 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030205 SAMN23017759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471942/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.848762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.849411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.094372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030206 SAMN23016841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210471943/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.971884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.5912 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.769793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030207 SAMN23015848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471944/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.464359 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.827451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.518362 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030208 SAMN23015850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471892/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.6318865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.980669 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.166758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030209 SAMN23015847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471945/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.901101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.683978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.34845 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030210 SAMN23015849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471893/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.781748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.908229 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.728569 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030211 SAMN23018462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210471949/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.764461 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.421003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.405872 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030212 SAMN23019065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471894/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.270733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.172445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.898397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030213 SAMN23015588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210471950/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.899956 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.381107 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.442278 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030214 SAMN23015587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210471951/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.987259 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.855167 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.928568 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030215 SAMN23019262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475242/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.192638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.325516 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.75814 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030216 SAMN23015739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475243/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.80282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.774675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.750717 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030217 SAMN23018886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475245/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.336035 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.237487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.260427 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030218 SAMN23015738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475246/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.279785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.299355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.792578 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030219 SAMN23016772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475247/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.943272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.232034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.75302 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030220 SAMN23015378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475248/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.389343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.926525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.777826 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030221 SAMN23015737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475252/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.013128 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.53971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.868524 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030222 SAMN23017922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475251/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.004326 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.746456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.384323 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030223 SAMN23018271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210475254/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.39124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.79397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.137879 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030224 SAMN23015736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475255/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.997621 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.801854 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.473068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030225 SAMN23017716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475253/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.682514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.68318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.207027 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030226 SAMN23016129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475256/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.591156 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.329402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.7803755 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030227 SAMN23017827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210475230/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.780357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.264874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.01283 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030228 SAMN23017923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475231/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.168176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.296525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.910585 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030229 SAMN23016455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475258/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.774302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.626462 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.4370365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030230 SAMN23015735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475261/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.812025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.772617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.34162 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030231 SAMN23019263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475232/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.058426 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.283506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.031862 lineage/clade name B.1.335 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030232 SAMN23015377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475262/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.666809 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.46777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.257241 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030233 SAMN23016128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475263/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.237307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.564215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.68751 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030234 SAMN23017921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475265/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.264714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.779003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.442932 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030235 SAMN23016677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210475266/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.048259 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.0667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.725276 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030236 SAMN23018270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210475268/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.192919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.021975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.610619 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030237 SAMN23018393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475270/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.09108 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.670076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.547499 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030238 SAMN23016771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475272/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.942052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.141682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030239 SAMN23015376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210475271/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.463051 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.611958 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.7108 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030240 SAMN23016770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475274/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.809262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.508223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.319145 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030241 SAMN23016127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475281/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.918559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.751601 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.026243 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030242 SAMN23017597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210475282/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.342922 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.692461 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.72589 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030243 SAMN23018884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475283/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.475391 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.667118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.166441 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030244 SAMN23016454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475285/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.864578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.231367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.411842 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030245 SAMN23016769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475286/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.351303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.484652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.317238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030246 SAMN23016100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476492/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.76075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.726486 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.496035 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030247 SAMN23016126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475287/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.726649 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.48615 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.42527 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030248 SAMN23018372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476493/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.570391 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.845502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.8504505 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030249 SAMN23015684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476494/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.864117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.915333 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.794106 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030250 SAMN23016427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210476495/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.961496 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.193233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.348082 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030251 SAMN23018314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210476497/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.493062 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.419833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.480524 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030252 SAMN23018816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476501/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.405535 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.515118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.259256 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030253 SAMN23016750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476498/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.548851 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.329083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.824546 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030254 SAMN23018261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210476499/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.633242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.285002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.918926 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030255 SAMN23018817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476500/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.95374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.59546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.444664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030256 SAMN23017306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476477/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.479988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.620565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.647923 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030257 SAMN23018024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476502/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.528446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.866705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.739639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030258 SAMN23017305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476478/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.391323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.507774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.156487 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030259 SAMN23017304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476479/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.996716 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.950945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.517254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030260 SAMN23017010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210476509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.413254 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.654797 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.474615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030261 SAMN23017109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476508/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.191271 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.606219 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.248865 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030262 SAMN23017898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476510/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.608673 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.40862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.033041 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030263 SAMN23015683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476514/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.386633 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.961971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.004072 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030264 SAMN23017301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476511/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.693363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.86362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.7246 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030265 SAMN23018575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476513/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.585518 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.277754 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.24425 lineage/clade name B.1.234 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030266 SAMN23015356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.945076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.736507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.770993 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030267 SAMN23017591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210476516/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.694169 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.912566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.2796755 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030268 SAMN23017590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210476517/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.562937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.998893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.214499 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030269 SAMN23018535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210476518/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.608003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.212159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.649776 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030270 SAMN23017688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476523/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.231375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.42261 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.815031 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030271 SAMN23017689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476522/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.519548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.711161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.280541 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030272 SAMN23019226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476519/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.700935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.17361 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.036217 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030273 SAMN23018813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476525/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.66975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.861917 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.802607 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030274 SAMN23018814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476524/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.966771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.909616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.3986635 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030275 SAMN23018023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476527/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.450392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.45784 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.536938 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030276 SAMN23015682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476526/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.86551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.623707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.993274 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030277 SAMN23018815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476503/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.017092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.275365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.718545 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030278 SAMN23016565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476504/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.61577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.868204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.012875 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030279 SAMN23019108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467648/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.867373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.387781 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.426117 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030280 SAMN23019107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467649/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.389927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.05773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.003359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030281 SAMN23017252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467652/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.456565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.815627 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.841928 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030282 SAMN23017670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210467650/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.405561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.72693 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.014345 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030283 SAMN23017253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467651/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.487972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.49544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.409882 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030284 SAMN23017251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467653/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.804424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.85277 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.732882 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030285 SAMN23017250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467654/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.217793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.665466 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.172424 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030286 SAMN23017249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467655/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.733019 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.660095 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.531033 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030287 SAMN23017509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467657/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.79235 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.380573 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.790513 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030288 SAMN23015333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210467656/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.114475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.8925495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.360592 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030289 SAMN23019106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467658/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.684828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.304731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.638851 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030290 SAMN23015515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467634/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.399054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.865955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.872553 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030291 SAMN23019404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210467636/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.957867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.351159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.111125 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030292 SAMN23017084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210467635/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.575863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.03214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.861563 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030293 SAMN23018740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467661/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.762817 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.882387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.706888 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030294 SAMN23018739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467662/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.94918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.531525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.201567 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030295 SAMN23018737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467664/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.571894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.283427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.174952 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030296 SAMN23018738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467663/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.792866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.335069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.815053 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030297 SAMN23017669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210467666/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.960329 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.530203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.82743 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030298 SAMN23016653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467668/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.834177 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.602144 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.099733 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030299 SAMN23018242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467670/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.231015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.466248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.01524 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030300 SAMN23018240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467672/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.504002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.670944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.786844 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030301 SAMN23018239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467673/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.227974 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.823261 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.241114 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030302 SAMN23018238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210467674/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.50934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.24583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.595234 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030303 SAMN23017083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210467675/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.322399 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.5173435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.959522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030304 SAMN23015513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467676/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.473013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.145206 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.82975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030305 SAMN23015879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467679/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.304508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.274665 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.188211 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030306 SAMN23018310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210467677/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.849857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.794127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.301895 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030307 SAMN23017082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210467682/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.868552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.250052 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.883394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030308 SAMN23017777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210468060/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.289443 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.996039 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.263539 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030309 SAMN23016223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468061/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.395758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.630508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.452019 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030310 SAMN23016888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210473016/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.502188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.612041 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.471615 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030311 SAMN23016222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210468062/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.019567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.221777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.985132 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030312 SAMN23019015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473020/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.358533 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.941151 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.414095 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030313 SAMN23016623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473021/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.873004 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.833049 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.56655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030314 SAMN23019014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473022/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.775513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.74745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.674377 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030315 SAMN23019013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473023/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.337118 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.219659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.321124 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030316 SAMN23019012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473024/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.681572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.587539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.834736 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030317 SAMN23018114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473027/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.966294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.357684 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.535814 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030318 SAMN23016717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210473028/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.388344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.393173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.784441 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030319 SAMN23018113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473029/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.683187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.33979 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.163958 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030320 SAMN23019011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473031/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.086067 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.608854 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.579697 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030321 SAMN23018218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473033/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.4809065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.728433 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.353901 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030322 SAMN23016622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210473032/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.47291 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.368885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.219196 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030323 SAMN23018217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210473034/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.567374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.402135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.536498 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030324 SAMN23016889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210473009/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.732962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.494707 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030325 SAMN23016071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210473035/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.920226 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.279865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.945295 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030326 SAMN23016890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210473008/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.525987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.582687 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.981334 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030327 SAMN23018334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210473010/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.345993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.41735 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.652323 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030328 SAMN23019429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210473042/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.502277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.498346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.143599 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030329 SAMN23017748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210473043/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.63354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.50829 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.323923 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030330 SAMN23016493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473045/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.093641 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.077221 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.670199 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030331 SAMN23019428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210473044/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.765782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.146651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.628852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030332 SAMN23017843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210473046/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.64549 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.871244 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.76409 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030333 SAMN23017955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473047/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.737892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.843517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.617626 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030334 SAMN23015956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210473049/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.562998 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.11958 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.485258 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030335 SAMN23017954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473050/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.85915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.315144 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.461164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030336 SAMN23019309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210473051/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.985497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.966667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.429881 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030337 SAMN23016492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473054/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.297525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.611517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.605362 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030338 SAMN23018116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473025/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.642157 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.696795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.572565 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030339 SAMN23018115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473026/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.613761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.905581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.6181555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030340 SAMN23019010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473056/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.159231 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.511537 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.876948 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030341 SAMN23019009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473057/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.511026 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.987178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.717072 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030342 SAMN23017197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210473058/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.62887 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.730782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.030325 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030343 SAMN23016595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210474315/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.413033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.979465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.91129 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030344 SAMN23017054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210474320/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.741173 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.576625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.748895 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030345 SAMN23016031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210474280/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.600855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.384237 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.372416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030346 SAMN23018935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474281/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.151222 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.83593 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.8566265 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030347 SAMN23019285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210474282/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.693478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.387754 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.296339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030348 SAMN23016593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210474323/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.097375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.86204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.775677 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030349 SAMN23017174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474325/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.016556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.290827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.76394 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030350 SAMN23017173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474326/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.845867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.431507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.697422 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030351 SAMN23017175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474324/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.89598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.925262 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.451445 lineage/clade name AY.45 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030352 SAMN23015396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474331/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.534967 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.18254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.849617 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030353 SAMN23017171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474332/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.755997 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.41671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.611527 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030354 SAMN23017172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474327/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.54556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.401758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.273975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030355 SAMN23015395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474333/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.782583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.27509 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.813225 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030356 SAMN23015394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474334/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.402097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.267868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.989518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030357 SAMN23015393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474335/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.315798 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.857373 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.7185755 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030358 SAMN23015392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474337/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.86341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.622599 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.910479 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030359 SAMN23018933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474339/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.128947 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.445519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.908038 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030360 SAMN23018421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474340/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.6122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.6166 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.805876 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030361 SAMN23016068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210474341/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.403744 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.46953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.55715 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030362 SAMN23017053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210474344/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.750027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.728584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.428011 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030363 SAMN23016406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210474346/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.243414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.485502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.445583 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030364 SAMN23016592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210474347/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.88149 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.568592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.522442 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030365 SAMN23018203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210474350/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.56029 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.356155 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.207802 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030366 SAMN23017645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210474351/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.657379 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.757877 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.599358 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030367 SAMN23017644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210474353/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.663877 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.513725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.226755 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030368 SAMN23017176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474321/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.511402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 33.33222 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.198542 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030369 SAMN23016712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210474354/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.392855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.120058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.01284 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030370 SAMN23016711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210474355/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.634525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.95058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.60648 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030371 SAMN23016594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210474322/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.942846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.563768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.026373 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030372 SAMN23018419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474358/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.982423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.229852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.169387 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030373 SAMN23018418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474359/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.294044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.446268 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.980389 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030374 SAMN23018417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474361/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.982147 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.524975 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030375 SAMN23017159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474771/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.24994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.813818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.516218 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030376 SAMN23017160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474770/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.811474 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.9074135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.4831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030377 SAMN23018906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474773/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.074017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.453838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.183372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030378 SAMN23018080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474775/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.661886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.16788 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.058254 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030379 SAMN23018078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474779/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.295074 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.62313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.238108 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030380 SAMN23016466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474818/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.995966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.63855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.246729 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030381 SAMN23017051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210474781/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.209638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.124884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.802916 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030382 SAMN23016468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474782/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.143724 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.427944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.967962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030383 SAMN23017377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474916/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.565918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.693422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.36657 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030384 SAMN23018905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474784/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.938032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.930505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.606419 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030385 SAMN23018197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210474787/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.945898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.283558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.336498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030386 SAMN23015754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474921/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.356787 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.898714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.78967 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030387 SAMN23018627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474749/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.736431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.0012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.885544 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030388 SAMN23017047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210474923/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.958239 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.332051 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.123177 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030389 SAMN23017731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474789/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.821281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.386692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.188779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030390 SAMN23018543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210474751/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.750111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.625826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.595454 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030391 SAMN23016835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210474795/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.898073 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.286293 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.233974 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030392 SAMN23017729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474794/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.231176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.427006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.967912 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030393 SAMN23016876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210474928/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.5597963 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.869377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.867613 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030394 SAMN23016834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210474796/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.027067 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.744228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.939898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030395 SAMN23016776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210474798/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.8563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.549097 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.452671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030396 SAMN23017832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210474800/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.986027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.227715 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030397 SAMN23017727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210474933/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.34253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.598843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.43003 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030398 SAMN23015755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474802/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.795628 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.804098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.497383 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030399 SAMN23017378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474803/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.698723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.622126 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.69381 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030400 SAMN23018904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474804/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.674765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.617147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.923876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030401 SAMN23016467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474806/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.694857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.209061 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.382917 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030402 SAMN23017807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210474807/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.278053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.364058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.457973 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030403 SAMN23016939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474941/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.142189 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.334364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.843294 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030404 SAMN23016877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210474811/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.180879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.359159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.502228 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030405 SAMN23018626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474812/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.118747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.718568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.779572 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030406 SAMN23016116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475726/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.749318 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.848567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.280373 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030407 SAMN23018412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210474810/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.445954 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.585203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.340632 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030408 SAMN23018319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210475727/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.196358 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.860353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.396025 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030409 SAMN23016115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475728/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.342644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.41077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.329075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030410 SAMN23018266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210475729/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.225317 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.015473 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.783269 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030411 SAMN23016930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475730/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.85333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.452668 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.320693 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030412 SAMN23016444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475732/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.568208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.664535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.371052 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030413 SAMN23017351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475731/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.58398 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.503956 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.164716 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030414 SAMN23015720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475733/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.54161 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.206387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.690609 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030415 SAMN23016929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475735/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.277267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.594103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.55739 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030416 SAMN23018055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475737/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.1560955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.520255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.169694 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030417 SAMN23016699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210475736/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.948563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.459038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.92962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030418 SAMN23018265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210475734/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.862488 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.097119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.11838 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030419 SAMN23016928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475738/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.565141 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.969169 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.666595 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030420 SAMN23015943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475766/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.904503 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.063654 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.147564 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030421 SAMN23016446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475718/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.941913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.564518 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.037373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030422 SAMN23017350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475739/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.28049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.864393 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.670598 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030423 SAMN23016698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210475744/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.95044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.391069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.949848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030424 SAMN23016442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475745/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.561248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.609032 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.474684 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030425 SAMN23018053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475771/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.302189 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.169106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.508875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030426 SAMN23016927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475746/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.76622 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.34391 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.161089 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030427 SAMN23017349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475747/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.764843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.910814 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.830965 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030428 SAMN23015947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475749/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.581146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.303894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.485694 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030429 SAMN23016113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475780/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.579768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.477521 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.936089 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030430 SAMN23016763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475750/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.376501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.169773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.553655 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030431 SAMN23018054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475753/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.658712 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.977802 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.866617 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030432 SAMN23018317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210475752/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.632582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.96457 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.324533 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030433 SAMN23017348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475754/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.515913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.569067 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.234396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030434 SAMN23018603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475755/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.560237 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.295972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.62362 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030435 SAMN23017347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475756/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.001003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.44006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.8830805 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030436 SAMN23018598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475785/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.872738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.475555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.457796 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030437 SAMN23015946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475757/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.344312 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.789659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.619952 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030438 SAMN23018583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476138/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.333527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.764078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.656939 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030439 SAMN23015945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475759/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.691229 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.413816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.890732 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030440 SAMN23018582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.162875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.541373 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.00521 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030441 SAMN23018047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476186/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.29683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 39.135242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.987114 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030442 SAMN23018046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476189/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.887457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.537971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.373775 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030443 SAMN23018580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476190/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.385504 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.27108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.282265 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030444 SAMN23017327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476191/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.586939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.099354 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.775852 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030445 SAMN23017695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476193/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.51392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.429066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.872164 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030446 SAMN23018044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476195/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.311834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.722668 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.43008 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030447 SAMN23015615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476196/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.9337015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.4816885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.117336 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030448 SAMN23018045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476194/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.629403 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.331652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.23419 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030449 SAMN23018043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476198/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.753603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.310522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.72962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030450 SAMN23018042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476199/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.209805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.474848 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.585338 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030451 SAMN23018041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.16675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.117817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.958483 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030452 SAMN23015702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476201/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.237226 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.33575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.193832 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030453 SAMN23016432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210476204/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.408209 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.35171 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.332697 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030454 SAMN23017123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476207/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.23528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.28534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.695396 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030455 SAMN23018195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210475086/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.733109 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.971472 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.26168 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030456 SAMN23018194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210475088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.500368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.912327 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.324621 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030457 SAMN23018193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210475090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.198501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.783412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.297237 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030458 SAMN23017720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475193/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.454153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.392471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.014968 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030459 SAMN23017032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210475091/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.381874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.016545 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.700956 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030460 SAMN23015951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210475096/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.27027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.925152 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.419004 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030461 SAMN23015743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475106/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.32895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.236408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.70918 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030462 SAMN23018890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475108/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.485445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.27146 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.971907 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030463 SAMN23015621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210475110/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.929586 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.446127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.3731165 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030464 SAMN23017147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475200/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.359689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.460077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.449534 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030465 SAMN23018889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475109/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.71694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.288823 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.847836 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030466 SAMN23017725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475049/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.627125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.516312 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.211794 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030467 SAMN23016458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475050/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.773829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.90633 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.662468 lineage/clade name AY.38 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030468 SAMN23015618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210475114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.415728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.634209 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.504095 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030469 SAMN23018888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.344678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.253698 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.631348 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030470 SAMN23016132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475117/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.202307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.205082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.759197 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030471 SAMN23017637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210475121/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.57823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.210442 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.077517 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030472 SAMN23015576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210475119/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.146767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.648203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.23607 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030473 SAMN23017723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475126/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.970232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.332396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.299212 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030474 SAMN23018400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475123/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.385294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.219164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.744926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030475 SAMN23017722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475127/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.784891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.849965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.110676 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030476 SAMN23017724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.807432 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.928217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.541964 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030477 SAMN23015742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.219954 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.675465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.759676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030478 SAMN23015741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.228306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.971623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.577493 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030479 SAMN23016587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210475189/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.10162 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.575148 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.225262 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030480 SAMN23016456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.976891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.669313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.6483755 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030481 SAMN23017371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475190/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.233286 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.688739 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.630999 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030482 SAMN23017721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475192/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.801888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.865661 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.562009 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030483 SAMN23017719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475194/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.787425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.499356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.707728 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030484 SAMN23017830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210475196/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.505379 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.212986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.772764 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030485 SAMN23018072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210475197/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.120531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.373535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.20158 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030486 SAMN23017697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475992/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.70733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.485065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.437065 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030487 SAMN23016935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210475199/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.435154 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.660723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.268536 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030488 SAMN23016435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210476115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.832984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.648429 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.436336 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030489 SAMN23018188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210475993/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.279012 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.995554 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.40481 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030490 SAMN23018587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475994/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.233578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.246706 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.227001 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030491 SAMN23016251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210475995/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.885107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.474903 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.339582 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030492 SAMN23018383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475974/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.799503 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.9900875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.907147 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030493 SAMN23017039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210475976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.880976 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.722645 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.447026 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030494 SAMN23019239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475996/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.956657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.235826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.815613 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030495 SAMN23019238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475997/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.825588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.890553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.593615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030496 SAMN23015708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476092/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.446146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.452492 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.516497 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030497 SAMN23016832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210476093/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.624582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.872001 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.813482 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030498 SAMN23015707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476094/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.353644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.215066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.049716 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030499 SAMN23018049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476096/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.143155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.610104 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.79339 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030500 SAMN23016864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210476097/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.97525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.760885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.941142 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030501 SAMN23017336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476098/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.49979 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.841664 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.42737 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030502 SAMN23015367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476101/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.302618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.615466 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.4902 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030503 SAMN23016436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210476106/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.659525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.222769 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.84753 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030504 SAMN23018537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210475986/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.675774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.840727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.339519 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030505 SAMN23018190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210475985/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.733658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.627787 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.117508 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030506 SAMN23018848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476109/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.778156 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.90347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.774698 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030507 SAMN23018847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476110/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.41222 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.709188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.3426485 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030508 SAMN23017332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476147/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.15127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.753834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.745311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030509 SAMN23016697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210476113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.205493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.631796 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.375791 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030510 SAMN23016925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210476116/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.394554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.220503 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.134026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030511 SAMN23017335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.097549 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.72565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.789117 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030512 SAMN23018586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476117/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.262959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.326483 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.694748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030513 SAMN23018585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.768306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.188114 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.790822 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030514 SAMN23015706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.356283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.76813 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.484812 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030515 SAMN23015705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476123/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.828058 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.674145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.862173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030516 SAMN23016399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210476125/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.261879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.434354 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.936287 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030517 SAMN23017334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476127/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.881676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.858192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.812574 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030518 SAMN23017900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476454/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.554898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.273773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.855261 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030519 SAMN23017333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476128/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.209415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.605988 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.463724 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030520 SAMN23016862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210476455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.614103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.644028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.354967 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030521 SAMN23016694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210476456/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.005042 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.763257 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.637867 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030522 SAMN23015611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.3315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.313341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.939945 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030523 SAMN23015685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476484/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.350557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.684119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.329767 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030524 SAMN23018818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.925293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.153732 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.955984 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030525 SAMN23019423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210476460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.970742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.806045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.584175 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030526 SAMN23018819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476458/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.558084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.551598 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.884724 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030527 SAMN23015610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476461/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.181122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.831548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.407805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030528 SAMN23017309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476464/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.801483 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.166206 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.826677 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030529 SAMN23017310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476463/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.784704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.929428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.572792 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030530 SAMN23015609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210476462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.728125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.528002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.878862 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030531 SAMN23017308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476465/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.711228 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.971282 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.488162 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030532 SAMN23017629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210476471/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.594738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.211388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.509452 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030533 SAMN23017110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476468/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.446997 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.711885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.138123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030534 SAMN23017111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476466/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.058939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.806166 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.030264 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030535 SAMN23016429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210476472/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.812826 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.92843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.38475 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030536 SAMN23016428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210476473/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.553642 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.763643 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.09735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030537 SAMN23018025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476475/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.813215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.59538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.348114 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030538 SAMN23017899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210476474/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.154953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.605587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.812216 lineage/clade name AY.45 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030539 SAMN23017307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476476/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.89206 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.894411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.445196 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030540 SAMN23018376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476452/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.682291 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.260065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.765432 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030541 SAMN23016863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210476453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.658092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.1885395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.325714 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030542 SAMN23017302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476481/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.255774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.382406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.260801 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030543 SAMN23017303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476480/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.169389 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.610839 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.161478 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030544 SAMN23018374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476483/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.964659 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.410805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.700496 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030545 SAMN23018375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476482/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.964025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.006151 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.62901 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030546 SAMN23018373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476486/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.200657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.645311 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.475636 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030547 SAMN23016246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210476485/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.390388 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.4222 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.328539 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030548 SAMN23016102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476490/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.799846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.841202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.436231 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030549 SAMN23016566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476489/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.439187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.501553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.8093605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030550 SAMN23016101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476491/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.36989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.622055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.980856 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030551 SAMN23017793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466138/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.463266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.96876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.889078 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030552 SAMN23016026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210466188/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.03597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.717045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.45388 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030553 SAMN23017281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210466574/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.276882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.702002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.427618 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030554 SAMN23017792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466575/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.325037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.602334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.594708 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030555 SAMN23015901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466576/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.429123 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.652493 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.949467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030556 SAMN23015900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466577/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.463316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.521513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.208408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030557 SAMN23017679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210466578/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.607436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.672894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.714467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030558 SAMN23016739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210466579/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.519361 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.474475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.246018 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030559 SAMN23017678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210466580/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.89112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.241283 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.16775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030560 SAMN23016738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210466581/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.110901 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.943436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.843784 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030561 SAMN23019372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466585/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.524488 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.183231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.879284 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030562 SAMN23019371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466586/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.318818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.8608675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.522188 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030563 SAMN23019370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466587/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.4352975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.571844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.956505 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030564 SAMN23019196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466588/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.432116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.768606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.579948 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030565 SAMN23019195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466589/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.63358 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.364683 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.60359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030566 SAMN23019369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466591/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.585435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.333205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.727892 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030567 SAMN23016670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210466592/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.18703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.327251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.10305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030568 SAMN23018005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210466593/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.187834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.9338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.8906 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030569 SAMN23016669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210466594/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.857136 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.642282 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.633614 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030570 SAMN23019368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466595/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.499683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.723937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.379066 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030571 SAMN23017283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210466572/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.45735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.783146 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.291655 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030572 SAMN23016737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210466596/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.426247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.274529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.269678 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030573 SAMN23016734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210466602/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.76339 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.180016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.924437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030574 SAMN23017282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210466573/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.1511135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.815656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.850647 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030575 SAMN23016736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210466597/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.577257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.172705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.083402 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030576 SAMN23016733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210466603/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.264682 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.376661 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.1053915 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030577 SAMN23015603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210466604/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.883548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.317247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.170182 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030578 SAMN23015602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210466605/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.209437 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.3235655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.86967 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030579 SAMN23016239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210466606/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.539147 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.539712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.321716 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030580 SAMN23018254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210466608/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.885883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.686615 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.865906 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030581 SAMN23018253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210466609/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.9967165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.603836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.205429 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030582 SAMN23018252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210466610/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.888632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.185617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.827528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030583 SAMN23018701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472227/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.6920805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.655218 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.644333 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030584 SAMN23015460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472225/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.814837 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.469173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.054349 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030585 SAMN23018700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472228/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.9484215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.741339 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.525885 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030586 SAMN23018698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472230/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.402018 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.614891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.90015 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030587 SAMN23018699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472229/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.355236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.305113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.757578 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030588 SAMN23018697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472231/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.292664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.6893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.149378 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030589 SAMN23015310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472233/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.968766 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.844634 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.606607 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030590 SAMN23015311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472232/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.108515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.870656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.577594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030591 SAMN23017610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210472234/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.181767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.31056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.598866 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030592 SAMN23018128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472237/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.3986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.809396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.398574 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030593 SAMN23015308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472236/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.762366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.707478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.496725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030594 SAMN23015309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472235/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.801592 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.453419 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.784044 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030595 SAMN23017070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210472239/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.523554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.652094 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.99016 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030596 SAMN23017657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210472240/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.553507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.86016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.355404 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030597 SAMN23016175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472241/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.826122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.742397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.469027 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030598 SAMN23017069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210472242/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.380869 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.8492775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.653332 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030599 SAMN23017068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210472243/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.206404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.75011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.74662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030600 SAMN23015835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472244/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.52991 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.75349 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.748472 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030601 SAMN23015834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472245/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.771005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.759549 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.456633 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030602 SAMN23018553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210472223/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.680677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.361648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.05825 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030603 SAMN23018289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210472221/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.270594 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.947168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.922697 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030604 SAMN23015836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472222/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.637085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.382925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.823204 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030605 SAMN23017448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472248/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.25739 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.865045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.371268 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030606 SAMN23017447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472249/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.350576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.428242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.429388 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030607 SAMN23016628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210472250/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.874801 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.344744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.226421 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030608 SAMN23018449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210472251/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.629872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.281574 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.21943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030609 SAMN23019035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472252/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.831233 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.627154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.607743 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030610 SAMN23016379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472254/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.847993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.813789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.248325 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030611 SAMN23019034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472253/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.717054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.372425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.248539 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030612 SAMN23015559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WA-CDC-ASC210472255/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.245117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.703547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.058672 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030613 SAMN23016378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472256/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.305777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.349274 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.641989 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030614 SAMN23019033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472257/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.756546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.584354 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.383896 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030615 SAMN23016947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.870531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.88009 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.478392 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030616 SAMN23015952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210474120/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.640781 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.979487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.930175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030617 SAMN23015953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210474119/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.57518 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.134424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.27336 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030618 SAMN23016945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.436444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.715756 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.436773 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030619 SAMN23016474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474124/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.75438 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.671707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.475178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030620 SAMN23018945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474121/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.711329 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.3707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.288406 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030621 SAMN23019396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210474123/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.624081 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.9671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.596473 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030622 SAMN23018204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210474125/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.304628 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.22471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.596264 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030623 SAMN23015405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474130/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.19424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.480486 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.763275 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030624 SAMN23015406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474128/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.904783 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.24396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.608818 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030626 SAMN23015773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.265013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.314605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.935142 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030627 SAMN23015404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210474132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.825531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.57864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.297514 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030628 SAMN23018648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.353827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.193428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.864264 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030629 SAMN23018649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.614618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.650808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.650139 lineage/clade name AY.4.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030630 SAMN23016944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474141/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.892603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.574251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.513096 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030631 SAMN23018279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210474146/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.555866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.571486 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.217537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030625 SAMN23017179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.858528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.213938 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.910341 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030632 SAMN23016713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210474142/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.194856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.995718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.657851 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030633 SAMN23018278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210474147/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.242592 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.796981 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.521129 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030634 SAMN23015772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.023534 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.699161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.2353945 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030635 SAMN23018280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210474145/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.219156 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.71078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.650599 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030636 SAMN23016950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474111/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.797544 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.917768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.208565 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030637 SAMN23016949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210474112/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.156706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.35478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.690634 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030638 SAMN23018942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474154/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.698908 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.459639 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.310617 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030639 SAMN23018549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210474151/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.807892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.51914 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.721022 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030640 SAMN23018091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474249/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.42934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.889503 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.772204 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030641 SAMN23015303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210474250/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.385141 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.596777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.364449 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030642 SAMN23018090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474253/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.40822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.669239 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.88004 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030643 SAMN23016780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210474254/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.183475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.662369 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.384138 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030644 SAMN23016148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474255/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.081486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.640013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.812113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030645 SAMN23016473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474256/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.611336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.153757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.97772 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030646 SAMN23018941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474258/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.577822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.611708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.693424 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030647 SAMN23016138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.852581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.576762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.75334 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030648 SAMN23017383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474736/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.606827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.576937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.913929 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030649 SAMN23018630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474739/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.014847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.193834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.81676 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030650 SAMN23017382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474737/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.833244 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.633721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.593043 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030651 SAMN23017161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210474769/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.303971 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.617648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.813733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030652 SAMN23017833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210474740/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.755154 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.218449 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.761354 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030653 SAMN23018909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474744/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.20775 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.36053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.188639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030654 SAMN23018911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474742/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.783312 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.290419 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.341701 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030655 SAMN23018910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474743/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.84063 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.398027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.136501 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030656 SAMN23018325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210474741/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.208316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.765358 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.754482 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030657 SAMN23018079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210474777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.479149 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.491285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.587925 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030658 SAMN23018908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474745/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.851626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.269689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.403361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030659 SAMN23018629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474746/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.545694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.956657 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.884972 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030660 SAMN23018628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210474748/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.10139 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.174363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.687965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030661 SAMN23018907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210474747/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.691296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.998226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.610119 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030662 SAMN23016469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210474720/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.91067 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.585165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.041376 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030663 SAMN23016141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474723/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.39797 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.78092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.508389 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030664 SAMN23017379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474785/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.404593 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.051575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.196646 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030665 SAMN23018545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210474724/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.36597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.596267 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.393667 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030666 SAMN23015759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474753/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.974482 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.805363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.698729 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030667 SAMN23015756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474793/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.595674 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.992412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.480769 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030668 SAMN23017381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474758/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.498602 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.810898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.367018 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030669 SAMN23015758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474754/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.392652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.782618 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.5568495 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030670 SAMN23016140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474759/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.446955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.033144 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.965406 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030671 SAMN23016775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210474799/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.901972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.08486 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.886408 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030672 SAMN23015757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210474757/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.49728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.296816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.334257 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030673 SAMN23017926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210474760/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.678377 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.585955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.46186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030674 SAMN23016139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.495554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.802092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.295523 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030675 SAMN23016777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210474764/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.674032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.80261 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.369076 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030676 SAMN23016137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474765/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.580467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.804688 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.896513 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030677 SAMN23016136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210474767/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.563612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.968387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.624413 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030678 SAMN23016655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467577/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.148002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.406439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.8835125 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030679 SAMN23017380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210474766/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.27546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.3367605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.091925 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030680 SAMN23018500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467579/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.120965 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.690138 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.3331175 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030681 SAMN23018499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467580/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.010944 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.441551 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.403284 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030682 SAMN23016914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210467581/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.612474 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.19781 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.048999 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030683 SAMN23015882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467582/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.666407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.175556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.143715 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030684 SAMN23016062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210467584/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.327759 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.846193 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.47651 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030685 SAMN23018347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210467585/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.675312 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.305864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.300539 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030686 SAMN23016658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210467559/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.7054615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.954003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.660469 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030687 SAMN23017523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467560/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.456278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.320385 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.198212 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030688 SAMN23018744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467588/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.74191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.209648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.920424 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030689 SAMN23018743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467589/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.84269 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.103483 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.414106 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030690 SAMN23019340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467591/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.312017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.307893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.387257 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030691 SAMN23017511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467594/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.876347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.345188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.08694 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030692 SAMN23015519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467596/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.683796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.903266 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.171605 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030693 SAMN23016040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210467593/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.6629 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.444494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.939527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030694 SAMN23017510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467595/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.129034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.31736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.103859 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030695 SAMN23017262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467597/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.62943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.85445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.96626 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030696 SAMN23017261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467598/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.677905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.472036 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.247826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030697 SAMN23017260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467599/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.56114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.873604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.707752 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030698 SAMN23017259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467600/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.391747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.44082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.260371 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030699 SAMN23017258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467601/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.22491 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.975641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.627445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030700 SAMN23016226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467602/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.995365 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.207883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.642024 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030701 SAMN23016225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467603/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.181007 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.618227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.428247 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030702 SAMN23016912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210467605/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.518328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.81108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.334366 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030703 SAMN23016913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210467604/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.24357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.3655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.218824 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030704 SAMN23016911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210467606/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.147688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.458515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.424688 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030705 SAMN23019119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467607/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.022049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.880692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.59815 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030706 SAMN23019118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467608/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.950514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.561125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.31993 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030707 SAMN23016997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210467610/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.774075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.99548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.793833 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030708 SAMN23016224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467609/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.281328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.824728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.919682 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030709 SAMN23018155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210467586/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.387495 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.335291 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.976687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030710 SAMN23018745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467587/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.877439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.915848 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.3595 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030711 SAMN23015995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470008/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.511934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.53012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.292822 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030712 SAMN23018730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210470009/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.370433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.287092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.859616 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030713 SAMN23015871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210470011/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.24396 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.873202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.401652 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030714 SAMN23017230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210470013/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.939733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.942445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.287281 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030715 SAMN23018230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210470032/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.874738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.937879 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.595892 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030716 SAMN23015502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210470131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.655242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.602905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.664813 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030717 SAMN23017077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210470137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.747354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.468295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.963115 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030718 SAMN23015501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210470132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.671848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.96934 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.653831 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030719 SAMN23017078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210470136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.82903 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.3513975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.798313 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030720 SAMN23017813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210470138/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.9871645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.206323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.667965 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030721 SAMN23015994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.592306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.69584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.52999 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030722 SAMN23017231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210469996/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.117578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.808188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.2818575 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030723 SAMN23018732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210469995/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.090933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.175032 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.979683 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030724 SAMN23015992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470142/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.259828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.065467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.384834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030725 SAMN23015993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210470140/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.882544 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.61627 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.230505 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030726 SAMN23017773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210470143/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.73012 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.184488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.493517 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030727 SAMN23018729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210470146/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.565723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.818066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.11424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030728 SAMN23018728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210470148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.269341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.522004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.984431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030729 SAMN23016992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210470145/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.124668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.319561 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.49361 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030730 SAMN23016001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210469998/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.67232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.712865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.549069 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030731 SAMN23016646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210470682/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.581789 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.539177 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.537813 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030732 SAMN23018475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210470681/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.517555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.734179 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.600505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030733 SAMN23018474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210470686/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.730635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.369974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.42137 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030734 SAMN23015870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210470685/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.91219 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.617828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.917465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030735 SAMN23015594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210470689/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.27171 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.13076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.394709 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030736 SAMN23016528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210470687/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.910034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.591568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.298685 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030737 SAMN23017498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210470690/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.361849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.117254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.222979 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030738 SAMN23015869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210470691/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.744666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.62248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.680368 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030739 SAMN23018473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210470692/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.414118 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.693617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.594416 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030740 SAMN23016645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210470693/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.333075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.090456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.909353 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030741 SAMN23017229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210470694/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.851288 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.984955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.03165 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030742 SAMN23015868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210470695/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.003021 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.716898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.485892 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030743 SAMN23015322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210471593/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.762995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.480781 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.815709 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030744 SAMN23018469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210471594/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.259445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.28575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.35579 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030745 SAMN23015321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210471595/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.298454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.744652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.48913 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030746 SAMN23018468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210471597/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.881977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.444912 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.2787 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030747 SAMN23017764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471598/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.272427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.721159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.709276 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030748 SAMN23017763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471599/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.308939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.330793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.888476 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030749 SAMN23017225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210471602/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.668874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.124311 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.885875 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030750 SAMN23017492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471580/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.354132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.721716 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.884495 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030751 SAMN23018554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210471606/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.951246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.250956 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.021948 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030752 SAMN23016521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471579/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.448065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.068697 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.560862 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030753 SAMN23016643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210471601/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.475084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.976322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.268506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030754 SAMN23019085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471607/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.43979 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.947905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.36541 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030755 SAMN23017490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471609/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.434973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.194113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.273012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030756 SAMN23019084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471608/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.366354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.267983 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.879688 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030757 SAMN23018146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471611/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.363455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.366287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.815725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030758 SAMN23017489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471610/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.5230465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.7283535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.593002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030759 SAMN23018145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471612/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.517912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.072289 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.482319 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030760 SAMN23019082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471618/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.618916 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.952453 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.578454 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030761 SAMN23019083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471617/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.903737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.638594 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.934418 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030762 SAMN23016987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210471619/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.999699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.046288 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.974995 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030763 SAMN23017488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471623/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.945707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.916095 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.697092 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030764 SAMN23017487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471624/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.910929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.3299 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.263184 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030765 SAMN23016799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210471621/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.453852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.479387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.382345 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030766 SAMN23017485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471626/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.769337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.438986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.4062 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030767 SAMN23016520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210471627/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.605175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.523758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.398682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030768 SAMN23017486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471625/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.595493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.46247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.021006 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030769 SAMN23015856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471629/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.603302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.873367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.124479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030770 SAMN23019081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471630/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.3940735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.457755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.269681 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030771 SAMN23015592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210471631/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.887531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.66525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.627094 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030772 SAMN23016986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210471632/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.462168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.837835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.742228 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030773 SAMN23019332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210471603/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.3271 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.425758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.131193 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030774 SAMN23017664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210471604/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.711351 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.687983 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.652756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030775 SAMN23019415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210471848/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.707373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.68808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.340092 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030776 SAMN23015473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471851/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.5581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.976875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.304877 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030777 SAMN23019416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210471847/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.398914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.655796 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.879799 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030778 SAMN23015472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471852/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.8348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.777052 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.684944 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030779 SAMN23019068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471862/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.282825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.850567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.235123 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030780 SAMN23019324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210471864/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.196054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.463163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.329779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030781 SAMN23019323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210471865/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.20458 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.026527 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.976538 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030782 SAMN23019067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471863/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.557457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.825132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.66271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030783 SAMN23018709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471866/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.263071 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.588716 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.101107 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030784 SAMN23018708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210471869/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.269978 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.241465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.924122 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030785 SAMN23016057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210471870/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.493082 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.657515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.30748 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030786 SAMN23015475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210471838/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.141195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.954564 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.5601845 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030787 SAMN23018138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471839/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.439014 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.936356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.844654 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030788 SAMN23015649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210471891/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.857245 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.857251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.591937 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030789 SAMN23016636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210471874/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.810678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.528374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.145025 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030790 SAMN23015541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 5.9673433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 7.658294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.097292 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030791 SAMN23017812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210471875/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.843514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.848869 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.346667 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030792 SAMN23017556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.883208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.652379 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.534289 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030793 SAMN23018559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210467119/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.182623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.977169 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.142998 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030794 SAMN23018558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210467120/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.354527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.754263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.523384 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030795 SAMN23016066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210467166/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.957703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.712659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.162247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030796 SAMN23019167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467165/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.235235 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.651236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.148626 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030797 SAMN23019166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467167/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.443544 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.433748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.291758 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030798 SAMN23019353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467170/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.760924 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.67659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.494962 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030799 SAMN23019355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467168/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.354879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.808529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.907017 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030800 SAMN23019165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467171/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.43441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.31859 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.095932 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030801 SAMN23019163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467174/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.495167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.722277 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.487331 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030802 SAMN23019161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467176/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.705116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.407232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.268332 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030803 SAMN23019164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467172/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.281162 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.290356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.0336 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030804 SAMN23019162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467175/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.65894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.038197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.159195 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030805 SAMN23019160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467177/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.242868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.358448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.958645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030806 SAMN23019159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467178/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.00486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.376328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.404446 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030807 SAMN23019158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467180/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.595391 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.995332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.561923 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030808 SAMN23019156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467183/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.761545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.38606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.893162 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030809 SAMN23019157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467182/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.31028 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.936726 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.858812 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030810 SAMN23015539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467184/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.808243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.336977 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.529522 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030811 SAMN23015538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467185/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.228486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.757367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.606651 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030812 SAMN23015537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467186/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.105888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.164467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.829113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030813 SAMN23019357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467149/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.163926 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.953298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.773021 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030814 SAMN23015536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467187/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.608839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.375862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.981821 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030815 SAMN23019356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467150/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.174631 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.465027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.318155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030816 SAMN23015540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467151/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.479368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.834745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.836832 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030817 SAMN23019169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467163/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.345877 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.730997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.18513 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030818 SAMN23019155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467192/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.132698 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.360843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.573353 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030819 SAMN23019352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210467202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.955698 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.265795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.844429 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030820 SAMN23017675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210467200/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.989754 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.847027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.718748 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030821 SAMN23016821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467206/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.461744 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.302284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.693058 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030822 SAMN23016820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467207/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.303377 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.538363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.20215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030823 SAMN23015889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467485/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.625145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.844643 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.000792 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030824 SAMN23019129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467514/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.495347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.281674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.718804 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030825 SAMN23019128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.648184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.316162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.43518 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030826 SAMN23019127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467516/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.823866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.489498 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.982328 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030827 SAMN23015887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467513/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.896597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.798155 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.478069 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030828 SAMN23019126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467517/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.90041 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.738487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.71041 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030829 SAMN23018751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467518/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.009916 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.743808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.847293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030830 SAMN23018750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467519/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.453417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.9370365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.511842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030831 SAMN23017531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467521/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.072966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.796982 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.576365 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030832 SAMN23018156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210467520/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.132647 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.579351 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.768291 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030833 SAMN23015523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467522/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.420069 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.380804 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.977127 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030834 SAMN23015521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467524/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.38947 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.43544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.409912 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030835 SAMN23017671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210467525/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.132282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.949335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.936049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030836 SAMN23016229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467526/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.494371 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.167515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.24587 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030837 SAMN23015522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467523/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.187292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.211834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.193726 lineage/clade name AY.32 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030838 SAMN23017264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467527/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.552883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.869059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.787716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030839 SAMN23017263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210467528/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.794409 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.795421 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.728083 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030840 SAMN23019125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467529/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.400812 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.872133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.15075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030841 SAMN23015885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467532/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.313381 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.204882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.992775 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030842 SAMN23015886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467531/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.35307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.681181 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.139912 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030843 SAMN23018157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210467511/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.423206 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.845087 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.793583 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030844 SAMN23019124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467530/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.735039 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.809364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.948524 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030845 SAMN23017672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210467512/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.656847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.142962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.614634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030846 SAMN23019121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467536/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.755818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.320948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.328314 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030847 SAMN23016812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467538/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.000538 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.890442 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.076645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030848 SAMN23018749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467539/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.303242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.941025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.987555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030849 SAMN23018748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467540/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.7761135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.376166 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.309613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030850 SAMN23018747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467541/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.545694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.389566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.731906 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030851 SAMN23018746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210467542/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.543173 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.972307 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.717257 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030852 SAMN23019120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467545/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.554262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.448132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.516953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030853 SAMN23015520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467544/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.904338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.821332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.031985 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030854 SAMN23015884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210467568/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.286758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.879633 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.322199 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030855 SAMN23019038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472124/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.852855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.921331 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.690974 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030860 SAMN23017451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472125/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.465189 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.5366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.070808 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030861 SAMN23016381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472126/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.654514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.385904 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.964405 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030862 SAMN23017450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472127/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.762194 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.229624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.821274 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030865 SAMN23017449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472129/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.427504 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.892792 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.512796 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030866 SAMN23016380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472130/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.522657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.7631 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.797794 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030867 SAMN23016384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472094/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.878948 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.260689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.022835 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030868 SAMN23016382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472096/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.2138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.976504 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.696302 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030869 SAMN23016383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472095/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.646457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.178422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.935466 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030870 SAMN23017219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.416634 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.997639 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.15943 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030871 SAMN23016682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210472170/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.49525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.96366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.123713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030872 SAMN23016176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210472135/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.999077 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.478334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.880585 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030873 SAMN23019037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472140/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.409853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.233076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.844608 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030874 SAMN23019036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472171/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.693501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.688582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.58613 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030875 SAMN23015464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472173/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.183416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.532402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.17363 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030876 SAMN23015463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472174/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.638319 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.343094 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.404175 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030877 SAMN23017218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472175/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.573312 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.274358 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.399985 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030878 SAMN23018703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472176/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.439774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.586584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.5126705 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030879 SAMN23018702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472177/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.542779 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.987049 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.683461 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030880 SAMN23015462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472180/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.959694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 33.69655 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030881 SAMN23017755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210472197/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.55573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.669144 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.35025 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030882 SAMN23015837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472199/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.972076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.385916 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.008375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030883 SAMN23016893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210472201/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.17874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.768465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.476856 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030884 SAMN23017659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210472202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.31032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.535372 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.009037 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030885 SAMN23015461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210472205/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.547068 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.328898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.743538 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030886 SAMN23017658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210472203/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.618309 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.521854 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.367596 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030887 SAMN23017026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210472208/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.770395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.977106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.582373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030888 SAMN23018129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210472206/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.89099 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.310832 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.484712 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030889 SAMN23017027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210472207/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.295051 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.219108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.917336 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030890 SAMN23015838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.54927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.8826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.641691 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030891 SAMN23015312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210472132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.733734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.396223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.886885 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030892 SAMN23017204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472860/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.21253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.39734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.848616 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030893 SAMN23017969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210472224/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.189843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.494746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.981354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030894 SAMN23017203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472863/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.8631 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.911997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.21728 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030895 SAMN23019022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472861/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Other collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.571541 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.274977 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.846174 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030896 SAMN23016495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472864/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.108078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.382015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.252481 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030897 SAMN23016494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210472865/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.28923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.682116 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.354675 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030898 SAMN23018680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472866/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.422398 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.767035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.650442 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030899 SAMN23019313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210472891/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.262403 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.624617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.30337 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030900 SAMN23019314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210472868/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.285082 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.035023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.5748205 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030901 SAMN23019315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210472867/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.423038 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.938837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.690762 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030902 SAMN23017202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472915/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.849997 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.217098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.194466 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030903 SAMN23017201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472917/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.617826 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.167366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.280245 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030904 SAMN23019021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472918/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.534224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.76321 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.241451 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030905 SAMN23019020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472919/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.228689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.354302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.348559 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030906 SAMN23016718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210472851/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.607243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.08852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.233322 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030907 SAMN23017439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210472852/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.185023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.307275 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.522003 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030908 SAMN23015810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210472943/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.9442215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.588722 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.651079 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030909 SAMN23017200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210472945/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.592133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.024841 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.455952 lineage/clade name C.38 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030910 SAMN23016375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472955/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.984785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.2339 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.648819 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030911 SAMN23018679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472954/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.458092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.473043 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.426523 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030912 SAMN23016793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210472946/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.443281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.486017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.29122 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030913 SAMN23018678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472956/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.319164 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.453388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.704027 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030914 SAMN23018677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472957/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.740847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.6252 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.41443 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030915 SAMN23018675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472959/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.520134 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.578857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.727114 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030916 SAMN23018676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472958/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.338203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.955421 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.840073 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030917 SAMN23016374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472960/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.926186 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.874554 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.334816 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030918 SAMN23018674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210472961/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.370455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.182752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.854077 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030919 SAMN23016372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472963/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.978456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.680937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.23031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030920 SAMN23016373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210472962/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.78278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.510796 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.178543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030921 SAMN23019019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472969/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.60453 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.988827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.739931 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030922 SAMN23016409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210472965/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.677839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.909393 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.236192 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030923 SAMN23018032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476416/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.496141 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.799068 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.64713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030924 SAMN23016973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210472973/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.61097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.40603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.253698 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030925 SAMN23019018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210472970/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.251308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.517605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.921 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030926 SAMN23017802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210476417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.898352 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.179907 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.096966 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030927 SAMN23019407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210476418/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.898483 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.034384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.830154 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030928 SAMN23015361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.8512707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.87022 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.547744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030929 SAMN23015360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476420/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.498936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.802057 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.169127 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030930 SAMN23015690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476421/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.581887 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.609699 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.5634575 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030931 SAMN23015288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210476423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.774343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.653568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.291178 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030932 SAMN23019229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476394/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.744602 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.503538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.728327 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030933 SAMN23019228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210476395/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.88056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.858236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.644419 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030934 SAMN23015689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476429/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.82294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.222656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.673254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030935 SAMN23015570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210476428/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.875814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.94771 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.150505 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030936 SAMN23018029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476427/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.034689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.227959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.011267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030937 SAMN23015688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476431/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.477005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.480628 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.293229 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030938 SAMN23018028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476432/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.938831 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.31595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.949936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030939 SAMN23016248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210476434/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.473967 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.140562 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.74118 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030940 SAMN23015687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476433/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.660359 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.349998 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.819768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030941 SAMN23016247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210476435/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.377958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.795034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.25159 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030942 SAMN23018027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476439/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.533563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.517326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.298495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030943 SAMN23016567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476436/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.866569 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.247079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.266732 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030944 SAMN23018820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476438/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.656229 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.569313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.834553 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030945 SAMN23018026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476440/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.931384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.004697 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.349248 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030946 SAMN23017690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476442/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.38602 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.848639 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.511148 lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030947 SAMN23015358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476444/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.422052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.306425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.906319 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030948 SAMN23016103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476447/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.192379 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.431625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.266825 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030949 SAMN23015357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.182314 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.654873 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.596145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030950 SAMN23015359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210476443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.780438 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.471811 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.448806 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030951 SAMN23018377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476449/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.383343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.2961035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.685263 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030952 SAMN23017866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210476450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.608337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.245043 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.660802 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030953 SAMN23018031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476424/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.922232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.214767 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.478306 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030954 SAMN23015686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476451/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.130713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.66696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.609781 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030955 SAMN23018378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210476425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.242527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.00144 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.540648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030956 SAMN23018030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.518797 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.528929 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.02614 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030957 SAMN23016087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476801/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.795902 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.712049 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.836563 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030958 SAMN23016086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210476802/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.174273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.507875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.550196 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030959 SAMN23017098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476806/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.282152 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.707472 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.507468 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030960 SAMN23017821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210476803/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.175695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.693098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.564066 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030961 SAMN23017820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210476805/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.177805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.31812 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.836599 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030962 SAMN23017097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476807/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.739744 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.392108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.699897 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030963 SAMN23017096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476808/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.772581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.131091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.9283495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030964 SAMN23018797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476810/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.476515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.63834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.291512 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030965 SAMN23017294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476860/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.217864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.728138 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.748914 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030966 SAMN23018564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476861/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.57001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.05837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.372236 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030967 SAMN23017035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210476862/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.664363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.39707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.978493 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030968 SAMN23018563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476865/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.80174 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.02207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.01066 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030969 SAMN23018014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210476866/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.449142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.00943 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.612242 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030970 SAMN23018256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210476867/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.70741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.746355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.772726 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030971 SAMN23018562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476868/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.769626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.485939 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.580278 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030972 SAMN23016042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210476869/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.626808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.452236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.202785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030973 SAMN23017293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210476872/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.801091 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.17671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.319581 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030974 SAMN23015266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210476870/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.364822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.454979 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.890064 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030975 SAMN23016557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476875/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.640242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.553576 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.339725 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030976 SAMN23016556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210476876/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.423969 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.76721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.914388 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030977 SAMN23016921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210476877/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.258074 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.179749 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.586382 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030978 SAMN23016742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476881/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.229729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.656674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.370316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030979 SAMN23016741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476889/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.410246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.405068 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.819863 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030980 SAMN23015668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476878/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.613914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.877096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.61717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030981 SAMN23018561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210476892/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 36.84837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 33.259674 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030982 SAMN23018795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476812/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.625516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.267902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.280535 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030983 SAMN23016740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210476891/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.01344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 38.93923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 32.550404 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030984 SAMN23018794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476815/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.186428 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.421267 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.194218 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030985 SAMN23017685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210476819/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.752487 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.63669 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.853178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030986 SAMN23015666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210476913/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.512165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 34.192577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 33.271645 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030987 SAMN23018793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476915/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 34.206394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.61015 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030988 SAMN23017094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210476919/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.15203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.638811 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030989 SAMN23015973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210471561/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.48147 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.54442 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.297234 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030990 SAMN23015972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210471562/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.337216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.33446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.837692 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030991 SAMN23015971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210471563/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.251338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.652976 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.1936035 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030992 SAMN23015970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210471564/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.060994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.752226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.952265 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030993 SAMN23017985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471565/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.579021 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.533982 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.661882 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030994 SAMN23015857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210471566/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.415646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.774904 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.97486 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030995 SAMN23018147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210471567/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.373743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.264854 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.10147 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030996 SAMN23017984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471568/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.489912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.266533 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.207727 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030997 SAMN23016989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210471569/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.245275 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.41602 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.779631 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030998 SAMN23017983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471571/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.740904 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.465714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.1917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11030999 SAMN23017982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471572/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.643922 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.833975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.377026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031000 SAMN23016988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210471570/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.474936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.745338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.4138 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031001 SAMN23017981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471573/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.067333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.38495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.323294 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031002 SAMN23017980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471574/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.762114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.64895 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.609116 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031003 SAMN23017979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471575/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.31418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.581327 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.230824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031004 SAMN23017977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471577/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.823112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.630226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.893246 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031005 SAMN23017978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210471576/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.625271 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.600821 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.402748 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031006 SAMN23016685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210471555/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.427395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.996792 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.403576 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031007 SAMN23016684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210471556/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.159986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.538164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.253687 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031008 SAMN23017848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210471557/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.774234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.175664 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.242821 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031009 SAMN23019401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210471581/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.245832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.282331 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.241207 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031010 SAMN23017491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210471582/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.938641 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.60954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.647423 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031011 SAMN23017072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210471583/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.290966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.865652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.710383 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031012 SAMN23017615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210471584/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.1234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.51556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.966885 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031013 SAMN23017614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210471585/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.59911 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.505979 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.861299 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031014 SAMN23016058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210471586/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.216396 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.286093 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.225863 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031015 SAMN23019087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471587/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.113243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.422501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.384154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031016 SAMN23019086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210471588/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.895618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.058533 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.763847 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031017 SAMN23017767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471589/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.870273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.383192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.704709 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031018 SAMN23017765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471591/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.796051 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.486645 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.042513 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031019 SAMN23017766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210471590/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.123575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.375454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.49054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031020 SAMN23015323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210471592/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.8212185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.912831 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.267491 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031021 SAMN23018105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473293/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.560928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.984844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.464485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031022 SAMN23018990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473326/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.431978 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.504042 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.157155 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031023 SAMN23018991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473291/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.179977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.742982 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.460969 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031024 SAMN23016049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210473294/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.978894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.090593 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.519823 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031025 SAMN23017950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473296/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.46391 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.613867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.117353 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031026 SAMN23017652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210473295/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.054389 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.5321665 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.814014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031027 SAMN23017432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473298/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.333547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.667771 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.295265 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031028 SAMN23018103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473332/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.256543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.651197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.675131 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031029 SAMN23017431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473299/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.86783 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.264528 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.236124 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031030 SAMN23017607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210473300/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.102676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.85644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.278426 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031031 SAMN23017430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473301/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.521215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.2169285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.399516 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031032 SAMN23018987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473339/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.352335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.983267 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.642872 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031033 SAMN23015637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210473304/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.263807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.496801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.910128 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031034 SAMN23017429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473308/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.79205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.751701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.572256 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031035 SAMN23018668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210473306/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.014479 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.276753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.354144 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031036 SAMN23016487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210473309/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source NP Swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.889414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.505428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.933698 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031037 SAMN23017427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473312/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.158142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.555747 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.363581 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031038 SAMN23016784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473349/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.13236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.622082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.280146 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031039 SAMN23017428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210473311/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.595863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.529373 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.779684 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031040 SAMN23016788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210473313/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.116531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.539656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.799067 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031041 SAMN23017949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473318/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.617038 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.462075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.023405 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031042 SAMN23018104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210473315/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.258455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.338469 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.990025 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031043 SAMN23017948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473319/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.777191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.299146 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.014823 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031044 SAMN23018995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473238/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.685992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.459676 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.381899 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031045 SAMN23017947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210473320/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.187085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.895543 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.662908 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031046 SAMN23015431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473322/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.608066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.237121 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.17487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031047 SAMN23015429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473324/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.969385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.57544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.914618 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031048 SAMN23015430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473323/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.020405 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.380896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.672823 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031049 SAMN23015428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473325/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.958155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.28775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.389952 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031050 SAMN23018989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210473327/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-19 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.805358 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.798754 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.021784 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031051 SAMN23015427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473329/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.783298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.628254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.1685505 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031052 SAMN23018863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475510/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.132132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.453472 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.290398 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031053 SAMN23015426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210473330/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.846361 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.85255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.561443 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031054 SAMN23018862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475511/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.626844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.650781 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.476848 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031055 SAMN23018192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210475512/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.616677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.189929 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.848417 lineage/clade name AY.29.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031056 SAMN23018389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.192003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.171131 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.852234 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031057 SAMN23016448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210475513/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.5960455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.568075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.651364 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031058 SAMN23018861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475516/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.464436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.837058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.501219 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031059 SAMN23018388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210475517/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.767693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.984732 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.381336 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031060 SAMN23017918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210475519/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.606012 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.777391 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.066357 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031061 SAMN23017358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475518/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.473164 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.947207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.898024 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031062 SAMN23018860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475520/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.744223 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.554653 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.616716 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031063 SAMN23017357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475521/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.822466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.17875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.847965 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031064 SAMN23018859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475522/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.387354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.31681 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.064926 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031065 SAMN23018525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210475523/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.553641 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.399988 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.216568 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031066 SAMN23017041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210475460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.19988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.041096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.552393 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031067 SAMN23018191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210475524/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.124678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.128822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.7892 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031068 SAMN23015269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210475479/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.131529 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.255001 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.931622 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031069 SAMN23018269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210475536/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.762035 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.790457 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.3331785 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031070 SAMN23016121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210475537/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.401121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.348646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.07939 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031071 SAMN23017356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210475528/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.488309 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.889046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.005114 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031072 SAMN23018540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210475559/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.549425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.575026 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.482588 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031073 SAMN23018268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210475538/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.263502 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.573983 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.555806 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031074 SAMN23017708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210475539/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.70981 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.709383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.27347 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031075 SAMN23016703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210475542/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.203241 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.876478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.095337 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031076 SAMN23017140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475540/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.571272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.530901 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.995594 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031077 SAMN23019253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210475541/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.965773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.945891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.475074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031078 SAMN23016702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210475544/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.818218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.670547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.303394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031079 SAMN23015727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475543/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.445332 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.506966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.781945 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031080 SAMN23018858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210475545/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.210492 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.556101 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.184773 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031081 SAMN23016766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210475546/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.397802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.118934 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.61578 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031082 SAMN23017139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475547/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.541425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.605091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.6045885 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031083 SAMN23016402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210475548/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.871886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.532096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.414019 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031084 SAMN23017138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210475549/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.551685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.591501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.643888 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031085 SAMN23019377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466124/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.613686 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.837826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.250355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031086 SAMN23019376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466125/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.405748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.564035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.39083 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031087 SAMN23019374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466128/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.702578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.59137 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.189758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031088 SAMN23019375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466126/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.393555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.35575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.37761 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031089 SAMN23015905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466130/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.172411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.416538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.976706 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031090 SAMN23015906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466129/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.688412 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.859972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.671463 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031091 SAMN23017799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.89411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.003598 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.395282 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031092 SAMN23017798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466133/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.761592 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.996073 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.870077 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031093 SAMN23017797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.73368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.580242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.593586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031094 SAMN23015904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.837265 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.73654 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.504173 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031095 SAMN23017681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210466111/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.438093 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.90263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.743986 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031096 SAMN23016024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210466191/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.88665 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.332607 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.032482 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031097 SAMN23019198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466494/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.27001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.329534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.161402 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031098 SAMN23016025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210466190/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.843607 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.459185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.15255 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031099 SAMN23016240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210466547/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.945519 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.39323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.823807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031100 SAMN23016544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210466549/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.594555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.223677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.479908 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031101 SAMN23016545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210466548/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.440149 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.176922 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.82546 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031102 SAMN23016543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210466550/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.4418545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.173698 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.806199 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031103 SAMN23015660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210466552/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.841017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.04585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.028496 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031104 SAMN23016825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210466554/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.014308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.609044 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.395393 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031105 SAMN23019197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210466553/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.700703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.200368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.823928 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031106 SAMN23017572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210466559/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.658408 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.871783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.044305 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031107 SAMN23017571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210466560/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.154401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.901899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.281758 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031108 SAMN23017570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210466561/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.985679 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.549445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.012153 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031109 SAMN23015903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466566/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.005617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.51408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.242224 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031110 SAMN23017284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210466571/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.242842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.271791 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.860832 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031111 SAMN23019373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210466569/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.489666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.534147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.683676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031112 SAMN23018166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210466564/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.368935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.384973 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.59638 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031113 SAMN23015902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210466567/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.284203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.9265585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.638864 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031114 SAMN23017796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466135/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.912348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.15873 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.578785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031115 SAMN23017555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210467208/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-15 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.444834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.252472 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.016087 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031116 SAMN23017795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.35991 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.453251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.148627 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031117 SAMN23017794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210466137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.463457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.520756 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.764868 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031118 SAMN23018511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467210/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.178615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.641567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.501251 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031119 SAMN23017626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210467209/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.698912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.33426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.312992 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031120 SAMN23016819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210467212/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.671223 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.438139 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.80957 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031121 SAMN23019152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467220/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.484484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.984806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.513381 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031122 SAMN23018510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210467215/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.2264 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.60694 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031123 SAMN23019149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467223/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.345424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.789431 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.78156 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031124 SAMN23019151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467221/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.184973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.287844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.8589735 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031125 SAMN23019148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467224/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.11998 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.864954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.729774 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031126 SAMN23019150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210467222/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.346894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.941212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.79721 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031127 SAMN23016237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467226/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.802677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.220835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.47931 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031128 SAMN23016539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210467228/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.760103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.18891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.403755 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031129 SAMN23016236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210467227/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.783039 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.857481 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.818434 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031130 SAMN23015535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467188/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.959957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.561899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.255821 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031131 SAMN23015338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210467233/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-16 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.848554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.961406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.632123 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031132 SAMN23015534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210467189/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-18 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.092451 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.290865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.6159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031133 SAMN23018811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476537/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.591932 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.573 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.103157 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031134 SAMN23018810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210476538/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.755262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.87471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.36188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031135 SAMN23019219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210490148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.542755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.2034855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.644454 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031136 SAMN23016596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210474096/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.42685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.802912 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.663021 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031137 SAMN23015725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475564/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.171806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.320929 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.879374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031138 SAMN23015724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210475565/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-21 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.250008 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.750254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.530142 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS11031139 SAMN23018604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210475712/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-20 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.28201 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.297039 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.204325 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated