SRX13114583 EOA1 (jejunum day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114584 EOA1 (jejunum day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114585 EOA1 (jejunum day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114586 EOA1 (jejunum day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114587 EOA1 (jejunum day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114588 EOA1 (jejunum day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114589 EOA1 (jejunum day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114590 EOA1 (jejunum day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114591 EOA1 (jejunum day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114592 Control (fece day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114593 EOA1 (jejunum day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114594 EOA2 (jejunum day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114595 EOA2 (jejunum day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114596 EOA2 (jejunum day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114597 EOA2 (jejunum day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114598 EOA2 (jejunum day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114599 EOA2 (jejunum day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114600 EOA2 (jejunum day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114601 EOA2 (jejunum day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114602 EOA2 (jejunum day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114603 Control (fece day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114604 EOA2 (jejunum day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114605 EOA2 (jejunum day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114606 EOA2 (jejunum day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (jejunum day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114607 Control (cecum day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114608 Control (cecum day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114609 Control (cecum day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114610 Control (cecum day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114611 Control (cecum day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114612 Control (cecum day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114613 Control (cecum day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114614 Control (fece day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114615 Control (cecum day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114616 Control (cecum day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114617 Control (cecum day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114618 Control (cecum day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114619 Control (cecum day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (cecum day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114620 VM (cecum day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114621 VM (cecum day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114622 VM (cecum day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114623 VM (cecum day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114624 VM (cecum day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114625 Control (fece day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114626 VM (cecum day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114627 VM (cecum day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114628 VM (cecum day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114629 VM (cecum day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114630 VM (cecum day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114631 VM (cecum day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114632 VM (cecum day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (cecum day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114633 EM (cecum day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114634 EM (cecum day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114635 EM (cecum day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114636 VM (fece day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114637 EM (cecum day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114638 EM (cecum day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114639 EM (cecum day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114640 EM (cecum day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114641 EM (cecum day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114642 EM (cecum day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114643 EM (cecum day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114644 EM (cecum day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114645 EM (cecum day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (cecum day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114646 EOA1 (cecum day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114647 Control (fece day 1) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 1) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114648 Control (fece day 1) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 1) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114649 Control (fece day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114650 EOA1 (jejunum day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114651 VM (jejunum day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114652 VM (jejunum day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114653 VM (jejunum day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114654 VM (jejunum day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114655 VM (jejunum day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114656 EM (jejunum day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114657 EM (jejunum day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114658 EM (jejunum day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114659 Control (fece day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114660 EM (jejunum day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114661 EM (jejunum day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114662 EM (jejunum day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114663 EM (jejunum day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114664 EM (jejunum day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114665 EM (jejunum day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114666 EM (jejunum day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114667 EM (jejunum day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114668 EM (jejunum day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (jejunum day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114669 EOA1 (jejunum day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (jejunum day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114670 EOA2 (fece day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114671 EOA2 (fece day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114672 EOA2 (fece day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114673 EOA2 (fece day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114674 EOA2 (fece day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114675 EOA2 (fece day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114676 EOA2 (fece day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114677 Control (fece day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114678 EOA2 (fece day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114679 EOA2 (fece day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114680 EOA2 (fece day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114681 Control (jejunum day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114682 Control (jejunum day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114683 Control (jejunum day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114684 Control (jejunum day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114685 Control (jejunum day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114686 Control (jejunum day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114687 Control (jejunum day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114688 Control (fece day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114689 Control (jejunum day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114690 Control (jejunum day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114691 Control (jejunum day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114692 Control (jejunum day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114693 Control (jejunum day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (jejunum day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114694 VM (jejunum day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114695 VM (jejunum day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114696 VM (jejunum day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114697 VM (jejunum day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114698 VM (jejunum day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114699 Control (fece day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114700 VM (jejunum day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114701 VM (jejunum day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (jejunum day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114702 VM (fece day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114703 EOA1 (cecum day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114704 EOA1 (cecum day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114705 EOA1 (cecum day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114706 EOA1 (cecum day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114707 EOA1 (cecum day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114708 EOA1 (cecum day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114709 EOA1 (cecum day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114710 EOA1 (cecum day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114711 EOA1 (cecum day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114712 EOA1 (cecum day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114713 VM (fece day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114714 EOA1 (cecum day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (cecum day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114715 EOA2 (cecum day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114716 EOA2 (cecum day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114717 EOA2 (cecum day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114718 EOA2 (cecum day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114719 EOA2 (cecum day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114720 EOA2 (cecum day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114721 EOA2 (cecum day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114722 EOA2 (cecum day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114723 EOA2 (cecum day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114724 VM (fece day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114725 EOA2 (cecum day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114726 EOA2 (cecum day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114727 EOA2 (cecum day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (cecum day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114728 VM (fece day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114729 Control (fece day 1) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 1) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114730 VM (fece day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114731 VM (fece day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114732 VM (fece day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114733 VM (fece day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114734 VM (fece day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114735 VM (fece day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114736 VM (fece day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 VM (fece day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114737 EM (fece day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114738 EM (fece day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114739 EM (fece day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114740 Control (fece day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114741 EM (fece day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114742 EM (fece day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114743 EM (fece day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114744 EM (fece day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114745 EM (fece day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114746 EM (fece day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114747 EM (fece day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114748 EM (fece day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114749 EM (fece day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EM (fece day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114750 EOA1 (fece day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114751 Control (fece day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114752 EOA1 (fece day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114753 EOA1 (fece day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114754 EOA1 (fece day 28) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 28) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114755 EOA1 (fece day 28) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 28) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114756 EOA1 (fece day 28) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 28) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114757 EOA1 (fece day 35) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 35) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114758 EOA1 (fece day 35) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 35) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114759 EOA1 (fece day 35) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 35) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114760 EOA1 (fece day 42) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 42) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114761 EOA1 (fece day 42) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 42) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114762 Control (fece day 14) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 Control (fece day 14) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114763 EOA1 (fece day 42) 3 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA1 (fece day 42) 3 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114764 EOA2 (fece day 14) 1 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 14) 1 AMPLICON GENOMIC PCR Illumina NovaSeq 6000 SRX13114765 EOA2 (fece day 14) 2 SRP345674 PRJNA778633 Changes in microbiota SRS11063453 SAMN22968414 EOA2 (fece day 14) 2 AMPLICON GENOMIC PCR Illumina NovaSeq 6000