<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX13569533" alias="GSM5766808_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX13569533</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM5766808_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM5766808: U2OS QKI7 input rep1 [qki7.1.in]; Homo sapiens; RIP-Seq</TITLE>
    <STUDY_REF accession="SRP353044">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP353044</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA793437</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS11461993">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS11461993</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM5766808</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM5766808</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>After cross-link with UV, the cells were collected by trypsinization, lysed in 1 ml M-PER buffer (78501, Thermo Fisher Scientific) with 100 U/ml RNase inhibitor and 1 × protease inhibitor on ice for 20 min, and sonicated in a Bioruptor Pico device (Diagenode) with 30s on/30s off for 10 cycles. Then the lysates were collected and subject to RIP with Flag antibody and Protein A/G Magnetic Beads. The RIP RNAs were recovered from the beads with RNA clean and concentrater kit. Both Input and RIP RNAs were used for sequencing. KAPA Stranded mRNA-Seq Kit (Illumina Platforms) was utilized to construct library and sequencing was performed on an Illumina Hiseq 2500.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX13569534" alias="GSM5766809_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX13569534</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM5766809_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM5766809: U2OS QKI7 input rep2 [qki7.2.in]; Homo sapiens; RIP-Seq</TITLE>
    <STUDY_REF accession="SRP353044">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP353044</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA793437</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS11461994">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS11461994</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM5766809</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM5766809</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>After cross-link with UV, the cells were collected by trypsinization, lysed in 1 ml M-PER buffer (78501, Thermo Fisher Scientific) with 100 U/ml RNase inhibitor and 1 × protease inhibitor on ice for 20 min, and sonicated in a Bioruptor Pico device (Diagenode) with 30s on/30s off for 10 cycles. Then the lysates were collected and subject to RIP with Flag antibody and Protein A/G Magnetic Beads. The RIP RNAs were recovered from the beads with RNA clean and concentrater kit. Both Input and RIP RNAs were used for sequencing. KAPA Stranded mRNA-Seq Kit (Illumina Platforms) was utilized to construct library and sequencing was performed on an Illumina Hiseq 2500.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX13569535" alias="GSM5766810_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX13569535</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM5766810_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM5766810: U2OS QKI7 RIP rep1 [qki7.1.ip]; Homo sapiens; RIP-Seq</TITLE>
    <STUDY_REF accession="SRP353044">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP353044</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA793437</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS11461995">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS11461995</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM5766810</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM5766810</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>After cross-link with UV, the cells were collected by trypsinization, lysed in 1 ml M-PER buffer (78501, Thermo Fisher Scientific) with 100 U/ml RNase inhibitor and 1 × protease inhibitor on ice for 20 min, and sonicated in a Bioruptor Pico device (Diagenode) with 30s on/30s off for 10 cycles. Then the lysates were collected and subject to RIP with Flag antibody and Protein A/G Magnetic Beads. The RIP RNAs were recovered from the beads with RNA clean and concentrater kit. Both Input and RIP RNAs were used for sequencing. KAPA Stranded mRNA-Seq Kit (Illumina Platforms) was utilized to construct library and sequencing was performed on an Illumina Hiseq 2500.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX13569536" alias="GSM5766811_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX13569536</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM5766811_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM5766811: U2OS QKI7 RIP rep2 [qki7.2.ip]; Homo sapiens; RIP-Seq</TITLE>
    <STUDY_REF accession="SRP353044">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP353044</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA793437</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS11461996">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS11461996</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM5766811</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM5766811</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>After cross-link with UV, the cells were collected by trypsinization, lysed in 1 ml M-PER buffer (78501, Thermo Fisher Scientific) with 100 U/ml RNase inhibitor and 1 × protease inhibitor on ice for 20 min, and sonicated in a Bioruptor Pico device (Diagenode) with 30s on/30s off for 10 cycles. Then the lysates were collected and subject to RIP with Flag antibody and Protein A/G Magnetic Beads. The RIP RNAs were recovered from the beads with RNA clean and concentrater kit. Both Input and RIP RNAs were used for sequencing. KAPA Stranded mRNA-Seq Kit (Illumina Platforms) was utilized to construct library and sequencing was performed on an Illumina Hiseq 2500.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
