SRX14035755 GSM5859109_r1 SRP358130 PRJNA803222 SRS11870882 GSM5859109 GSM5859109 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035756 GSM5859110_r1 SRP358130 PRJNA803222 SRS11870883 GSM5859110 GSM5859110 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035757 GSM5859111_r1 SRP358130 PRJNA803222 SRS11870884 GSM5859111 GSM5859111 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035758 GSM5859112_r1 SRP358130 PRJNA803222 SRS11870885 GSM5859112 GSM5859112 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035759 GSM5859113_r1 SRP358130 PRJNA803222 SRS11870886 GSM5859113 GSM5859113 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035760 GSM5859114_r1 SRP358130 PRJNA803222 SRS11870887 GSM5859114 GSM5859114 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035761 GSM5859115_r1 SRP358130 PRJNA803222 SRS11870888 GSM5859115 GSM5859115 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035762 GSM5859116_r1 SRP358130 PRJNA803222 SRS11870889 GSM5859116 GSM5859116 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035763 GSM5859093_r1 SRP358130 PRJNA803222 SRS11870890 GSM5859093 GSM5859093 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035764 GSM5859094_r1 SRP358130 PRJNA803222 SRS11870891 GSM5859094 GSM5859094 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035765 GSM5859095_r1 SRP358130 PRJNA803222 SRS11870892 GSM5859095 GSM5859095 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035766 GSM5859096_r1 SRP358130 PRJNA803222 SRS11870893 GSM5859096 GSM5859096 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035767 GSM5859097_r1 SRP358130 PRJNA803222 SRS11870894 GSM5859097 GSM5859097 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035768 GSM5859098_r1 SRP358130 PRJNA803222 SRS11870895 GSM5859098 GSM5859098 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035769 GSM5859099_r1 SRP358130 PRJNA803222 SRS11870896 GSM5859099 GSM5859099 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035770 GSM5859100_r1 SRP358130 PRJNA803222 SRS11870897 GSM5859100 GSM5859100 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035771 GSM5859101_r1 SRP358130 PRJNA803222 SRS11870898 GSM5859101 GSM5859101 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035772 GSM5859102_r1 SRP358130 PRJNA803222 SRS11870899 GSM5859102 GSM5859102 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035773 GSM5859103_r1 SRP358130 PRJNA803222 SRS11870900 GSM5859103 GSM5859103 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035774 GSM5859104_r1 SRP358130 PRJNA803222 SRS11870901 GSM5859104 GSM5859104 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035775 GSM5859105_r1 SRP358130 PRJNA803222 SRS11870902 GSM5859105 GSM5859105 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035776 GSM5859106_r1 SRP358130 PRJNA803222 SRS11870903 GSM5859106 GSM5859106 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035777 GSM5859107_r1 SRP358130 PRJNA803222 SRS11870904 GSM5859107 GSM5859107 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000 SRX14035778 GSM5859108_r1 SRP358130 PRJNA803222 SRS11870905 GSM5859108 GSM5859108 RNA-Seq TRANSCRIPTOMIC cDNA Early visible lesions and their immediate surrounding area were sampled from PVY-inoculated leaves four days post inoculation. Sections of comparable size were sampled from mock-inoculated leaves as controls. Three plants per genotype per treatment were analysed, pooling together all lesions or mock-sections from one leaf per plant. Tissue sections were stored in RNA-later RNA Stabilization Solution (ThermoFisher Scientific) and then homogenized using Tissue Lyser (Qiagen). Total RNA was isolated with TRIzol (Invitrogen) and Direct-zol RNA MicroPrep Kit, DNAse treated and purified with RNA Clean & Concentrator kit (both Zymo Research) according to the manufacturer's instructions. Strand-specific library preparation was performed by Novogene (HongKong) using standard Illumina protocol. Illumina NovaSeq 6000