<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX14071898" alias="GSM5866832_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX14071898</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM5866832_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM5866832: D28_WT_KIDNEY_ORGANOID_HNF1A_CHIP; Homo sapiens; ChIP-Seq</TITLE>
    <STUDY_REF accession="SRP358695">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP358695</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA804122</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS11899289">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS11899289</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM5866832</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM5866832</LIBRARY_NAME>
        <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Nuclear lysates were clarified from sonicated kidney organoids following dissociation using TrypLE. Immunoprecipitation of HNF1A protein was performed using HNF1A antibody (ab96777). Library preparation was done using a commercially available kit, NEB# E7645 NEBNext Ultra II DNA Library Prep Kit for Illumina KIT® following the manufacturer's protocol. During the library construction, the ChIP-ed DNA underwent End Repair, Adapter ligation, size selection (for ~150bp insert)  and 16 cycles PCR enrichment to generate the final sequencing ready library. The quality of the library was checked using Agilent D1000 ScreenTape. The final library should have a fragment size of ~270bp insert plus adaptor and PCR primer sequences). The quality of the library was checked using Agilent D1000 ScreenTape. A single peak was expected and was observed indicating that the library was good and suitable for sequencing.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX14071899" alias="GSM5866833_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX14071899</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM5866833_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM5866833: D28_WT_KIDNEY_ORGANOID_HNF1A_INPUT; Homo sapiens; ChIP-Seq</TITLE>
    <STUDY_REF accession="SRP358695">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP358695</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA804122</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS11899290">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS11899290</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM5866833</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM5866833</LIBRARY_NAME>
        <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Nuclear lysates were clarified from sonicated kidney organoids following dissociation using TrypLE. Immunoprecipitation of HNF1A protein was performed using HNF1A antibody (ab96777). Library preparation was done using a commercially available kit, NEB# E7645 NEBNext Ultra II DNA Library Prep Kit for Illumina KIT® following the manufacturer's protocol. During the library construction, the ChIP-ed DNA underwent End Repair, Adapter ligation, size selection (for ~150bp insert)  and 16 cycles PCR enrichment to generate the final sequencing ready library. The quality of the library was checked using Agilent D1000 ScreenTape. The final library should have a fragment size of ~270bp insert plus adaptor and PCR primer sequences). The quality of the library was checked using Agilent D1000 ScreenTape. A single peak was expected and was observed indicating that the library was good and suitable for sequencing.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
