<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX15044704" alias="C.sim_minion_run_1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX15044704</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB11385219">C.sim_minion_run_1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>nanopore RNA-Seq of Cehpalothrix simula</TITLE>
    <STUDY_REF accession="SRP372582">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP372582</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA832799</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>mRNA extraction was conducted with NEBNext Poly(A) mRNA Magnetic Isolation Module (New England Biolabs). cDNA was synthesized with Mint2 kit (Evrogen). cDNA sequencing carried out on MinION Mk1B platform (Oxford Nanopore Technologies) with Direct cDNA Sequencing Kit SQK-DCS109. Basecalling of  raw data was conducted with guppy basecaller.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS12791070">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS12791070</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|vas9ikz@gmail.com">minion_C.sim_run1</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>C.sim_minion_run_1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <OXFORD_NANOPORE>
        <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
      </OXFORD_NANOPORE>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
