SRS12809832 SAMN23611451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-FVFZDYRCZ/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809831 SAMN23612717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FUR9JTV99/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809830 SAMN23612169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FU7Y2VT5C/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809829 SAMN23612718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FTK56JQZR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809828 SAMN23612170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FTBDZGQFK/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809827 SAMN23611684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FSYKZBQZX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809817 SAMN23611686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FNQ77SKHG/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809818 SAMN23611685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FNYZWM4U8/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809819 SAMN23612173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FP89N432B/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809820 SAMN23612172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FPSCAUXZH/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809821 SAMN23611516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-FPYNFR6KX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809822 SAMN23612499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-FQA6GQCDP/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809823 SAMN23612720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FQKKYWB28/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809824 SAMN23612171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FS8PPCRTK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809825 SAMN23612498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-FSEYR88ZK/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809826 SAMN23612719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FSNPRKUP9/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809840 SAMN23613113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FZFE53VGM/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809841 SAMN23612168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FZJQ8X9ZW/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809833 SAMN23612960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-FX4RB6MJ8/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809834 SAMN23612716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FX77B92RG/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809835 SAMN23613116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FXPUNHTBU/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809836 SAMN23611683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FXX9UBK3E/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.107 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809837 SAMN23613115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FXXRXQHHN/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809838 SAMN23612715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FYBGKVJFK/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809839 SAMN23613114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FZD3CP8MA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809842 SAMN23611682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FZP7UKPCA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809843 SAMN23612167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FZTVWEVY3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809844 SAMN23612497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-FZUQVTQAQ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809845 SAMN23612166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-G227VC4WV/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809846 SAMN23611450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-G2BEGBKK9/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809847 SAMN23613356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-G2KSPFE9P/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809848 SAMN23611681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-G2V52FTKF/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809849 SAMN23611952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UZ9A722AG/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809850 SAMN23611567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-V2CQQFEKU/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809851 SAMN23612857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-V2DVXJWZF/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809852 SAMN23611951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-V2F5V5TY3/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809853 SAMN23612604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-V2XW7MRTT/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809854 SAMN23611950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-V33DSTWYQ/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809855 SAMN23612603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-V34BV5B2C/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809856 SAMN23611837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-V3B6B7QSY/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 43 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809858 SAMN23611566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-V3MDVNA4K/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809867 SAMN23613230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-V7W68M8W2/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809857 SAMN23612602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-V3KRY74NE/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809859 SAMN23612601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-V3PMXSHKY/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809860 SAMN23611565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-V45XHYTXE/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809861 SAMN23613042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-V48BKGVWB/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809862 SAMN23611949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-V4VFZVFFV/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809863 SAMN23611410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-V52DKEM9F/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809864 SAMN23612600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-V5TAAP2NX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809865 SAMN23611564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-V6F5T4AQX/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809866 SAMN23611409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-V7C5P4HAB/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.100 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809868 SAMN23612599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-V86NNY433/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809869 SAMN23611408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-V8VEEE443/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809870 SAMN23612446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-V9G78K3BK/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809871 SAMN23611948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-V9RB2ASHK/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809872 SAMN23611947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VA3UQCAQ9/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809873 SAMN23611563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-VA729QHKX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809874 SAMN23611946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VA7D9VA4N/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.114 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809875 SAMN23613308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-VAJDVVH7A/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809876 SAMN23612856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-VBEFSAXVS/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809877 SAMN23611562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-VCCNFNK77/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809878 SAMN23612598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-VCE38YA78/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809879 SAMN23612597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-VCK2SXJDH/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809880 SAMN23611945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VDN7WUAQZ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809881 SAMN23611925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WVMJYGMQB/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809882 SAMN23612418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-WVRXUFNC9/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809883 SAMN23611924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WW2TVK8AG/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809884 SAMN23612437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-WWKTF826J/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809885 SAMN23611923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WWVV843CS/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809886 SAMN23612586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WYKZ5WCHC/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809887 SAMN23611922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WYWHU4CHD/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809888 SAMN23612854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-WZ53AHTPY/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809889 SAMN23611921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WZX7X8CCY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809890 SAMN23611920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-X3G3AHDGR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809891 SAMN23611544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-X3PBPTT7S/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809892 SAMN23611919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-X4V6CZ5WK/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809893 SAMN23613226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-X55KAJXMK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809894 SAMN23613030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-X55WD8VCD/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809895 SAMN23612922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-X5JBW3M3Q/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809896 SAMN23613029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-X5NHDRYKZ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809897 SAMN23613028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-X62ZJBNJ6/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809898 SAMN23611403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-X676M2MPG/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809899 SAMN23611918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-X6B64VVRK/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809900 SAMN23612585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-X6G44PM4M/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809901 SAMN23611917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-X6X8UG7HN/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809902 SAMN23613295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-X72P7QN36/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.105 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809903 SAMN23612921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-X7B3J9CYJ/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809904 SAMN23612853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-X7HUXJGMA/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809906 SAMN23612436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-X7ZRGKUWQ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809907 SAMN23611915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-X8JM9UFN6/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809905 SAMN23611916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-X7M3DWWE3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809908 SAMN23611914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-X8PJPU6XQ/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809909 SAMN23612435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-X8YB6YRZK/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809910 SAMN23611836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-XA6XJ3ZY8/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809911 SAMN23611543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XAD7PEAJE/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809912 SAMN23612434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-XCGK6X9R2/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809913 SAMN23611775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-5MPQZ6APR/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.101 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809914 SAMN23612820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5N4KPC4TF/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809915 SAMN23613001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-5PGHVEKJS/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809916 SAMN23612819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5QA8GAMTW/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809917 SAMN23612355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5QTTQVK7G/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809918 SAMN23612900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-5S4SHFQDP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809919 SAMN23612818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5SADU2M7M/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809920 SAMN23611490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5STFNVTXV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809921 SAMN23612817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5T5P2JDCX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809922 SAMN23612354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5T9U35C37/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809923 SAMN23613186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5TJ39VKKQ/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809924 SAMN23612353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5TQG5XCE7/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809925 SAMN23612534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-5U2B62MAH/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809926 SAMN23612352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5U6SPU5BB/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809927 SAMN23612533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-5UCGTT6YF/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809928 SAMN23612351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5UEH882KA/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809929 SAMN23612350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5UMTRKDPC/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809930 SAMN23612532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-5USGRW8F4/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809931 SAMN23613185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5UXDH94VN/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809932 SAMN23611489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5UZXV4H3K/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809933 SAMN23612349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5VHKNH3NU/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809934 SAMN23612816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5VNBEMV4J/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809935 SAMN23613551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-5W2S4QXT7/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809936 SAMN23612815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5WEYKMSNR/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809937 SAMN23612531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-5X7J5GNXH/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809938 SAMN23612814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5XJ3UK2RB/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809939 SAMN23612348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5XZ3XT9GX/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809940 SAMN23612813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5YGY36ENP/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809941 SAMN23612347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5YHNKE6H9/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.99.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809942 SAMN23613274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5YQ2P84ZN/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809943 SAMN23612346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5YUSWUB7Y/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809944 SAMN23612345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5Z36S9EW6/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809945 SAMN23613543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-7BSZ7XCFQ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809946 SAMN23612315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7C8SR45K5/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809947 SAMN23612991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-7CAFXFQP9/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809948 SAMN23612314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7CDGC2MYE/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809949 SAMN23612313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7CV7YDJAZ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809950 SAMN23612797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-7CVWZT63U/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809951 SAMN23612527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-7ERNKVMW2/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809952 SAMN23612312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7EV5ADVDJ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809953 SAMN23613542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-7GF5RJREA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.99.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809954 SAMN23611842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-7GGCXXEDM/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809955 SAMN23612526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-7HMEZUY7Q/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809956 SAMN23613173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7HPKQZNED/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809957 SAMN23612796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-7HQPZ25DU/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809958 SAMN23613172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7J7CDDE7V/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809959 SAMN23613171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7K55CHMT7/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809960 SAMN23613541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-7N3ES7QPV/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809961 SAMN23613170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7N4HHP7QC/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809962 SAMN23611766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-7Q93BRAWP/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809963 SAMN23613272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-7QJ69UHC5/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809964 SAMN23612311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7S3TNWUGE/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809965 SAMN23611482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-7S6Z7ZDTW/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809966 SAMN23612310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7SDNW9R5M/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809967 SAMN23612795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-7SUZ7AVW7/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809968 SAMN23613169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7T8PKAJWX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809969 SAMN23612309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7U4Y3JM8Y/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809970 SAMN23612308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7UEUT5U56/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809971 SAMN23612307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7UMNGRKEW/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809972 SAMN23611765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-7UUD53HB3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809973 SAMN23612525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-7VRV8BX3T/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809974 SAMN23612794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-7W3WSQ4QV/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809975 SAMN23613271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-7W92YWAKP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809976 SAMN23611481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-7WZ5TESEK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809977 SAMN23612157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GJJJDQ3HN/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809978 SAMN23613355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-GMKEXEEEY/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809979 SAMN23613109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GMPHDTE9S/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809980 SAMN23612156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GMQUB5FEQ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809981 SAMN23611673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GPHJPT2DU/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809982 SAMN23611446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-GPNJT6JZF/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809983 SAMN23613108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GQUNWPYMA/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809984 SAMN23612155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GRNQTMVFF/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809985 SAMN23611816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-GRW66FGWD/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809986 SAMN23613354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-GS7C9D3D9/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809987 SAMN23611672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GSS4RYMTF/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809988 SAMN23612493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-GTUXV2V67/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809989 SAMN23612154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GTYQX4R5Y/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.110 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809990 SAMN23612153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GU5V7GNJK/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809991 SAMN23612152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GVFK93ZSK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809992 SAMN23611671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GVPR3TX5T/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809993 SAMN23613107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GVYAJFRJP/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809994 SAMN23611670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GVZ7AX7A9/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809995 SAMN23611669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GW29JNCA8/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809996 SAMN23612151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GWK7QPK79/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809997 SAMN23611668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GX9GA3TXQ/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809998 SAMN23611445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-GXVXYCH72/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12809999 SAMN23612150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GYGY8FJGF/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810000 SAMN23612149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GYJ848NGT/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810002 SAMN23613106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GZTNXW6SX/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810003 SAMN23612492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-H2JJC9D49/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810001 SAMN23611868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-GZBT7MYEE/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810004 SAMN23612957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-H2Q84QUBJ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810005 SAMN23613353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-H2YHZYEGG/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810006 SAMN23611667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-H38TQWZ9X/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810007 SAMN23611666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-H3D4HEH5R/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810008 SAMN23612711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-H3M54AVBN/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810009 SAMN23611656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-J2ZXBVW8P/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810010 SAMN23612132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-J32ERBG29/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810011 SAMN23612701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-J34NZJ5JA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810012 SAMN23612700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-J35JZHRFP/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810013 SAMN23611848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-J3RA4K37P/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810014 SAMN23613345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-J58HB2NEJ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810015 SAMN23612490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-J5QAXKDKY/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810016 SAMN23613210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DC-CDC-STM-J6E2HRM6Q/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810017 SAMN23613100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-J7E4WFS78/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810018 SAMN23613249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-J7FUGERZS/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810019 SAMN23611655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-J7U6VNWZ9/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810020 SAMN23612489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-J7X4552JD/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810021 SAMN23612952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-J8JCYTP2D/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810022 SAMN23611440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-JA5E6QJWC/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810023 SAMN23612488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-JB7KHNX9Q/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810024 SAMN23612951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-JBA4WP474/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810025 SAMN23611654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JBE58S6VX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810026 SAMN23611824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-JCFAHZ6A8/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810027 SAMN23612487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-JCGKS7U8D/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810028 SAMN23612131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-JCMX7S3HG/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810029 SAMN23611653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JDEKYAMXE/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810030 SAMN23611439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-JDGC8XGV3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810031 SAMN23611652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JEBVGZTTQ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810032 SAMN23612699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JEJKQGCQA/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810033 SAMN23613344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-JF25K4YAT/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810034 SAMN23612698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JF67BW2Q5/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810035 SAMN23612130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-JFGKZ44CJ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810036 SAMN23611651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JFSKPXZ4F/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810037 SAMN23611650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JGQ5AF2YV/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810038 SAMN23611649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JH5X257DP/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810039 SAMN23613248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JJU35CZ2M/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810040 SAMN23613343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-JHRU3VEPB/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810041 SAMN23611896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YPPE28U6M/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810042 SAMN23611529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-YQFVUECM9/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810043 SAMN23612563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YRVW7ER8N/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810044 SAMN23612562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YSVA8TSS8/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810045 SAMN23611845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NH-CDC-STM-YT7MD5B84/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810046 SAMN23613015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YTZA9SD2G/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810047 SAMN23612561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YTA3B3NB8/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810048 SAMN23611895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YUEHR27PK/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810049 SAMN23613014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YVFBJ3CZU/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810050 SAMN23611394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-YVRUYJ62Y/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810051 SAMN23612560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YVWEUG3CW/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.114 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810052 SAMN23611528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-YWQRXEDXX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810053 SAMN23613013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YWEQRSNSU/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810054 SAMN23612916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-YY8SBKBMM/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810055 SAMN23611894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YXKHBGXNE/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810056 SAMN23611893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YYRFXJUBY/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810057 SAMN23612559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YZ9GJ837U/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810058 SAMN23611892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Z2R672ZVT/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810059 SAMN23611891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Z3QDDXU87/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810060 SAMN23612558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Z5SJ5CUH7/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 46 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810061 SAMN23611393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-Z68PEKVMQ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810062 SAMN23611527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-Z78JXWYGA/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810063 SAMN23612428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-Z7WRNNM88/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810064 SAMN23612557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Z87GZC3EU/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810065 SAMN23613288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-ZB4E4GV9X/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810066 SAMN23611890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZBD768UFC/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810067 SAMN23611526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZCKUK92WH/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810068 SAMN23611889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZCUSGM2UT/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.99.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810069 SAMN23611392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-ZD2PS2R5G/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810070 SAMN23612556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-ZEHWV9XU6/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810071 SAMN23611525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZG258YCZY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810072 SAMN23613012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZG4A6VKG6/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810073 SAMN23612108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KZNJUENMF/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810074 SAMN23612684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-M2T2NHHPY/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810075 SAMN23611636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-M45K8MFAJ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810076 SAMN23612107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-M45RA8E3P/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810077 SAMN23611435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-M4AZ53MNN/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810078 SAMN23612106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-M4DPD7KHS/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810079 SAMN23611434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-M5VBT4M5M/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810080 SAMN23612105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-M6SBZKRU5/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810081 SAMN23612683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-M797YHYZE/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810082 SAMN23611635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-M7FYYPMJ5/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810083 SAMN23612104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-M7TD8T929/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810084 SAMN23612103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-M7TZG6YM8/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810085 SAMN23611433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-M7WFEJSCY/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810086 SAMN23611867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-M8BMKDJZU/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810087 SAMN23612682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-M9NH23R3W/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810088 SAMN23613091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-M9YD3RQM6/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810089 SAMN23613090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MA74Q49HW/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.64 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810090 SAMN23612681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MA76Y7GTD/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810091 SAMN23612680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MAPCYU7BA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810092 SAMN23612102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MARFZ9HXK/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810093 SAMN23612873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-MATS3MQE6/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810094 SAMN23612101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MB42YNA82/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810095 SAMN23612679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MBS92BS42/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810096 SAMN23611634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-MBXDF3YVQ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.101 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810097 SAMN23612678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MCEB6HXZK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810098 SAMN23612100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ME34QXUXQ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.114 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810099 SAMN23612099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ME7CKN2E2/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810100 SAMN23612098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ME9YYJWSZ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.5.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810101 SAMN23612097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MEPQ86BZJ/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810102 SAMN23612677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MFHGJMPQ3/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810103 SAMN23612096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MFXQE28F2/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810104 SAMN23611838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-MGR6B84SK/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810105 SAMN23611522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZXT7UPZ8P/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810106 SAMN23611521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZXZC8YYUQ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810107 SAMN23612549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-ZYNBPB82R/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810108 SAMN23613285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-ZZ94ZPQ7Z/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810109 SAMN23611391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-ZZCDY7AA5/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810110 SAMN23612426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-ZZMUV2YF5/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810111 SAMN23612299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8BN6PXASQ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810112 SAMN23612989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-8CBVDTR86/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810113 SAMN23612990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-8BYT52X7Z/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810114 SAMN23612788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8CEWFS4GH/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810115 SAMN23611759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8CX3BVKC6/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.98.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810116 SAMN23612298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8DCRNV3E9/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810117 SAMN23611758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8DMJZMPCT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810118 SAMN23612297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8DS6WQFXX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810119 SAMN23612988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-8EP3BGK6D/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810120 SAMN23612296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8EQ56CA27/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810121 SAMN23612295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8FF33QEFH/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810122 SAMN23611757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8FNVG8PNV/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.110 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810123 SAMN23612294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8FQCZ4GQJ/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810124 SAMN23612293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8GZWFWBQX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810125 SAMN23612292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8HDZVZPJC/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810126 SAMN23612787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8HYPYAS4D/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810127 SAMN23613164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8JXQPDNA7/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810128 SAMN23612291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8KA4STYKQ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810129 SAMN23611756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8KDDUV7ZE/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810130 SAMN23612290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8MH5SPURP/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810131 SAMN23612987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-8MMQ867KX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810132 SAMN23611818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-8PCPAYD9E/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810133 SAMN23611755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8N4PZYNSR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810134 SAMN23612288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8PQR9A6YV/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810135 SAMN23612289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8PNZ63WH7/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810136 SAMN23611754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8R3KDKUSP/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810137 SAMN23613377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-8RRYJSCTU/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810138 SAMN23612786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8SCRP3BA9/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810139 SAMN23613376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-8SSDY57PU/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810140 SAMN23612785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8TFSRFW79/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810141 SAMN23612286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8U5KDEQ4M/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810142 SAMN23612287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8U2A4RHYC/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810143 SAMN23612473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-NM6X6GGGJ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810144 SAMN23612472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-NM89ZE82G/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810145 SAMN23612075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NMA9RNGQK/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810146 SAMN23611626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NMNDDYS9Y/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810147 SAMN23612665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-NMSU5U3YC/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810148 SAMN23611625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NMZGQSDDT/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810149 SAMN23611624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NN726VAFJ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810150 SAMN23611623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NNW5QFT95/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810151 SAMN23612471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-NNX47NFVX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810152 SAMN23611429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-NP473E3SS/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810153 SAMN23612074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NPE8G9NGX/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810154 SAMN23612073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NPEZG52UC/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810155 SAMN23611622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NPK5WKTHX/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810156 SAMN23613084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NPMJGKKRF/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810157 SAMN23612072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NPSZZRSQY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810158 SAMN23613083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NPYX3WNYE/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810159 SAMN23612869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-NQNMGSSQM/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810160 SAMN23612071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NRC7DM9AG/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810161 SAMN23612070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NRYPHCTDY/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810162 SAMN23613335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-NRTJ59R3W/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810163 SAMN23611621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NS2TNQHZ5/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810164 SAMN23613082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NT4E8P6NX/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810165 SAMN23613081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NU4RWXAP9/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810166 SAMN23612664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-NU6FB9KCP/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810167 SAMN23612939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-NU6HDQRZN/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810168 SAMN23612663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-NU8F33DH2/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810169 SAMN23612069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NUS34JF26/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.114 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810170 SAMN23611428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-NVQW3XN2U/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810171 SAMN23611620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NVV7N9NZJ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810172 SAMN23612868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-NW5EBUPST/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810173 SAMN23612068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NWH7JN8YP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810174 SAMN23612648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QCY9FYNF7/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810175 SAMN23611619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NWQB8W45X/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810176 SAMN23611609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QDAWVVFVS/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810177 SAMN23613073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QDMETKDNA/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810178 SAMN23612037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QEBUERTCP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.110 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810179 SAMN23612036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QEYN7B2ZU/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810180 SAMN23612035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QFA93CEH8/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810181 SAMN23611608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QFETZH96M/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810182 SAMN23613072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QGGCZ649T/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810183 SAMN23613071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QGS2XN4KM/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.95 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810184 SAMN23612034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QGWM8J25V/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810185 SAMN23611423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-QJK7DDZ4X/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810186 SAMN23612647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QHZXGS98R/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810187 SAMN23613070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QKCQESS4G/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810188 SAMN23611607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QKVKDNHT7/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810189 SAMN23612646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QN2NVCH94/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810190 SAMN23613323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-QNEGGQ7AW/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810191 SAMN23612645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QNRXKHWUN/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810194 SAMN23612032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QQ3WZEDHT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810195 SAMN23611605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QQ9HNMJBT/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810196 SAMN23612864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-QQBHGAPUR/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810192 SAMN23612033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QPA5N7M4D/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810193 SAMN23611606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QPVWVDN6Q/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810197 SAMN23611604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QR4APRUUY/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810198 SAMN23611603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QRFESQUDX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810199 SAMN23613322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-QRG8ED5DD/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810200 SAMN23611602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QSG8C9W2S/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810201 SAMN23612465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-QSNK2DUAP/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810202 SAMN23612546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-QTEKY7AZE/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Not Provided collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810203 SAMN23612031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QU7HETMJ3/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810204 SAMN23611601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QUBNTR67A/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810205 SAMN23612644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QUM4FP38T/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810206 SAMN23611600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QUQ9FTRE6/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810207 SAMN23612250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-B9BXGZZAC/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810208 SAMN23612249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-B9QJPSP9N/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810209 SAMN23611728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BA763EWKE/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810210 SAMN23611873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-BADAKAWFX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810211 SAMN23611727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BACW3GAEP/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810212 SAMN23611726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BAK76VFPD/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810213 SAMN23612757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-BB5TW8X2J/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810214 SAMN23613367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-BAZA6XCSH/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810215 SAMN23612756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-BB9B73YE9/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810216 SAMN23612755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-BCW7UXVY2/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810217 SAMN23612976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-BCWT2JQPM/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810218 SAMN23611725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BCYM6S5GK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810219 SAMN23613147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BDY6BYW6J/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810220 SAMN23611724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BE4DBE3W2/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810221 SAMN23612892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-BERJW5DUA/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810222 SAMN23612248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BF5QNS5WQ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810223 SAMN23611723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BFKEK3KHD/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810224 SAMN23611471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-BFYBVEJZC/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810225 SAMN23612975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-BFNGDQGJK/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810226 SAMN23612247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BG6AD385E/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810227 SAMN23612246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BG7FB8HK2/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810228 SAMN23611722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BGMS2ENSF/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810229 SAMN23611470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-BH8RCCN9K/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810230 SAMN23611721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BHPCVGM5G/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810231 SAMN23611872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-BJCRXM7B3/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810232 SAMN23612891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-BJSFWRCRN/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810233 SAMN23611827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-BK7ZP3274/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810234 SAMN23612245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BM4QKGJN4/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810235 SAMN23611469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-BM4VCTEXA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810236 SAMN23612754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-BN9PK87XS/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810237 SAMN23612753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-BNYTW5SXR/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810238 SAMN23612244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BP73AQR9X/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810239 SAMN23612508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-D6AEM4MTJ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.98.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810240 SAMN23612972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-D6CS6BMB7/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810241 SAMN23613220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-D6YTSQDNB/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.98 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810242 SAMN23612222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-D7KZU5MZT/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810243 SAMN23612221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-D7M594ZSK/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810244 SAMN23613364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-D8D2RHQWA/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810245 SAMN23611708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-D8JA7Y9JB/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810246 SAMN23612887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-D9XTDU92X/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810247 SAMN23613129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DA2CHXHSD/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810248 SAMN23611459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-DAT7CHSAN/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810249 SAMN23612220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DB2EZD7M2/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810250 SAMN23611707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DBG4ZV2WX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810251 SAMN23611706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DBNAJY6FZ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810252 SAMN23612219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DBYBWD44S/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810253 SAMN23612738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DCGYGVAT3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810254 SAMN23611705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DCJW9Z728/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810255 SAMN23611458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-DCNAK8WV3/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810256 SAMN23613363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-DD34K49RM/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810257 SAMN23612971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-DD3DKQ63F/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810258 SAMN23611704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DDXHSUXJ3/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810259 SAMN23612507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-DEHTGKYRA/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810260 SAMN23611870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-DEPM3VHS8/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810261 SAMN23613128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DEX3FVHWV/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810262 SAMN23611703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DF2EMMU6P/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810263 SAMN23611702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DFV5ZTH56/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810264 SAMN23612970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-DJ4PRPNV6/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810265 SAMN23612737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DHV7Q94UW/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810266 SAMN23612736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DJU49R2CS/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810267 SAMN23611701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DKPGHPJCT/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810268 SAMN23612886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-DM23CR6C9/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810269 SAMN23611700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DMT92837N/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810270 SAMN23612735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DMXEGRYBB/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 19 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810271 SAMN23611438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-JKHWVE5H2/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810272 SAMN23611815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-JKR4K3BJ3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810273 SAMN23611648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JKWN5PEXB/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810274 SAMN23612877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-JKYZV49S7/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810275 SAMN23612697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JNY5PBNRJ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810276 SAMN23611647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JP3XY6DQE/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810277 SAMN23612950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-JP9WSBB8Z/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810278 SAMN23612696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JPH2JMWZK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810279 SAMN23611646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JPMHH57AZ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810280 SAMN23612949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-JPX78X75W/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810281 SAMN23612695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JQV4Y6UTQ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810282 SAMN23613247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JQXDQSCMY/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810283 SAMN23611840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-JR423QP95/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810284 SAMN23612876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-JSKAGENYS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810285 SAMN23613099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JTE6VYDHQ/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810286 SAMN23612694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JTMAG9TAT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810287 SAMN23612693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JVY9383JP/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810288 SAMN23613098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JW6XE72HX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810289 SAMN23612948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-JW9SJY84J/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810290 SAMN23612129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-JWGN28954/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810291 SAMN23611645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JXCZ53Z87/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810292 SAMN23612692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JY8AXQD6G/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.54 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810293 SAMN23612486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-JYAMMH2NM/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810294 SAMN23612691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JYRFZ8GW2/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810295 SAMN23611839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-JZ8ER5RZ9/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810296 SAMN23612875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-JZBRD3V6J/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810297 SAMN23613097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JZKZE5384/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810298 SAMN23611519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PR-CDC-STM-JZN5JGCA6/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810299 SAMN23612128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-K2GASC2P8/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810300 SAMN23612485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-K2KFA9YTM/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810301 SAMN23612484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-K2RTAATY2/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810302 SAMN23612127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-K2XYEVHJ8/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810303 SAMN23612095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MHH9NC7MA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810304 SAMN23612872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-MHH9DPW78/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810305 SAMN23611514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-MKK7EHTNF/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810306 SAMN23611633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-MHSXAWHEM/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810307 SAMN23612094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MN37DN92N/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810308 SAMN23612092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MNUF9GTDA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810309 SAMN23612093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MNRP686QV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810310 SAMN23612676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MP49WH3YB/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810311 SAMN23612675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MPKEEUE49/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810312 SAMN23612944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-MPCSPE9P9/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810313 SAMN23612091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MQCUWAZA3/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810314 SAMN23611866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-MQQPXXFBZ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810315 SAMN23612090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MRWPRDCXM/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810316 SAMN23612089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MSDQ4Y78H/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810317 SAMN23612943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-MSEPTQFQ3/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810318 SAMN23612674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MR4ZUG7ZC/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810319 SAMN23612088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MSGAVP24V/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810320 SAMN23612087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MTUP4N8WS/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810321 SAMN23611632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-MUHFVFWVC/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810322 SAMN23613089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MVQMS5QG2/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810323 SAMN23611813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-MWDFWJWFA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810324 SAMN23612673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MWYRU7DFB/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810325 SAMN23611631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-MWZTMEXW6/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810326 SAMN23612086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MXCHQSWUU/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810327 SAMN23612085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MXSCB8WUN/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810328 SAMN23612942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-MXZQ4PQUN/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810329 SAMN23612084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MYB664NR5/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810330 SAMN23613088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MY6Q24SFY/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810331 SAMN23613336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-MZJ9FQH3X/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810332 SAMN23612083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MYPUEABEE/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810333 SAMN23612082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-N33UWBWZB/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810334 SAMN23612672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-N2RC88EQS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810335 SAMN23612285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8UXTZ3UP2/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810336 SAMN23611753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8V5UFKBZC/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.98.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810337 SAMN23611752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8V9A6VAND/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810338 SAMN23612284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8VP8X2GFQ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810339 SAMN23611829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-8W2DUFDQ4/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 47 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810340 SAMN23612784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8WBQJD8TN/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810341 SAMN23612783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8WY4A4GKK/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810342 SAMN23612986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-8XC5MC4DW/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810343 SAMN23612782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8XJQJDAZB/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810344 SAMN23612283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8Y5JSQ88S/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810345 SAMN23611751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8Y6Z35H6T/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810346 SAMN23613163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8Y7J3E3K5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810347 SAMN23612898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-8ZNZQ987W/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810348 SAMN23612282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8ZAWHCG6G/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810349 SAMN23612781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8ZP5Q6QJ7/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810350 SAMN23613375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-8ZPQC4X6B/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810351 SAMN23613269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-8ZQAVJCBG/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810352 SAMN23612985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-8ZX77H2FZ/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810353 SAMN23612984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-92R6WUMZK/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810354 SAMN23613162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-92VSKSCKV/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810355 SAMN23612281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-93FSE3AA5/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810356 SAMN23612521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-93SFAH5SP/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810357 SAMN23611750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-94MCNX8XN/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810358 SAMN23612280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-94VWD3YQE/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810359 SAMN23611749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-957GW22PH/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810360 SAMN23612983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-95NTW9NB6/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810361 SAMN23613268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-96HWH2PJE/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810362 SAMN23613161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-96H37XMBG/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810363 SAMN23613160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-96YGZB4ND/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810364 SAMN23612982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-97GCVDE9H/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810365 SAMN23612279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-973DS27T5/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810366 SAMN23613374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-98BZWWCRM/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810367 SAMN23612470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-NX9Z366U4/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810368 SAMN23611864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-NXBCQVDEE/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810369 SAMN23612662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-NXUP7AJES/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810370 SAMN23613080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NXJSQ5QAD/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810371 SAMN23613244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-NYY7XN8Y9/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810372 SAMN23612661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-NXWVGNQZ3/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810373 SAMN23613334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-NZ6EX57PP/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810374 SAMN23612067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NZ2UXG4J6/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810375 SAMN23612066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-P252AQAYR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810376 SAMN23613243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-NZJG2NYBF/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810377 SAMN23611618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-P2B9BCWW5/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810378 SAMN23611427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-P2FMJSEUK/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810379 SAMN23612660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-P2XEKR4QN/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810380 SAMN23611617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-P44UY9CKQ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810381 SAMN23613333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-P3YD3XRCH/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810382 SAMN23612065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-P4BXB6P33/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810383 SAMN23612064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-P62Y3TAP9/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810384 SAMN23611616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-P6CAXJK7S/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810385 SAMN23612659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-P7Z3M9CR7/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810386 SAMN23613332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-P8QNMUHFU/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810387 SAMN23613079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-P8HH6Q5WP/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810388 SAMN23611615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-P8TPMY6U6/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810389 SAMN23612658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-P8WRYFU79/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810390 SAMN23611614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-P9UEU49JP/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810391 SAMN23613331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-P9YWVKETT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810392 SAMN23613078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PACV6ZGDP/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810393 SAMN23611613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-PAGAFJDGQ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810394 SAMN23612063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PAZNUUQRB/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810395 SAMN23612062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PB6MAGM3H/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810396 SAMN23613330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-PBUT8M8KQ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810397 SAMN23612061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PBZPKEAJA/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810398 SAMN23612464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-QV9XFZ5ZR/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810399 SAMN23612030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QVKYDXHF8/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810400 SAMN23612657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-PC2H5VSRB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810401 SAMN23611422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-QWBNU39DR/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810402 SAMN23612028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QY8DPW4SG/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810403 SAMN23612029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QX3VQD8ZA/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810404 SAMN23612027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QZAJYR38J/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810405 SAMN23611599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QZE6CY4KZ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810406 SAMN23612863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-QZYDPSD85/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810407 SAMN23612026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-R2FPX72WR/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810408 SAMN23613241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-R2GYXU9XP/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810409 SAMN23613321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-R4R3ZP52V/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810410 SAMN23612463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-R4UJ2G2V4/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810411 SAMN23611598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-R4Z4S3HSU/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810412 SAMN23613069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-R5BMHPF5Z/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810413 SAMN23612462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-R5JFV8DKG/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810414 SAMN23612025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-R6VQ8PPPY/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810415 SAMN23613068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-R6HERTQKN/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810416 SAMN23612934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-R6KHMBVWE/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810417 SAMN23612024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-R6ZMN84F5/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810418 SAMN23612023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-R9JUV27HM/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810419 SAMN23612643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-R7CFX6AT4/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810420 SAMN23611597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-R92GS8B4T/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810421 SAMN23612022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-RAGXJR5UQ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810422 SAMN23611513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-RCYDFRFAZ/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810423 SAMN23612021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-RB7XQ69HQ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810424 SAMN23612020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-RCGVTAWKT/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810425 SAMN23612019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-RD35QCJ7P/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810426 SAMN23612018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-RENWC6B82/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810427 SAMN23611859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-RERZDB5TZ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810428 SAMN23612017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-RJHGWC6XG/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810429 SAMN23611596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-RMS49VD5B/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810430 SAMN23612752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-BP8GVS3RF/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810431 SAMN23612642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RMWZBS4GW/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810432 SAMN23612243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BPA3GEF2Z/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.99.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810433 SAMN23611468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-BQ3JZV3A3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810434 SAMN23613146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BQAKVCGS2/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810435 SAMN23612515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-BSYA2CSU2/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810436 SAMN23613260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-BUYC7ZUYY/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810437 SAMN23611467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-BV83T8E8U/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810438 SAMN23611720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BVD9CMQMK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810439 SAMN23611719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BVRS4EGJG/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.98.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810440 SAMN23613145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BW79HTXBU/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810441 SAMN23613144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BWHJ2K4G2/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810442 SAMN23612242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BXMUW2K9U/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810443 SAMN23611718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BY5G3F7R3/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810444 SAMN23613143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-C2F33XCWX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810445 SAMN23612241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BYGPDBRDD/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810446 SAMN23613142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-C2NV89B47/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810447 SAMN23611717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-C4SJFGADY/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810448 SAMN23612240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-C4XZMYJU9/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810449 SAMN23612751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-C54G2BAFG/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810450 SAMN23612423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-C54UQ7AN5/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810451 SAMN23612239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-C5KWHZ3AC/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810452 SAMN23613141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-C559VECFG/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810453 SAMN23612750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-C5T26PU32/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810454 SAMN23613140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-C6M4GFEDV/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810455 SAMN23611466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-C65ANTCP5/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810456 SAMN23612749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-C7HVZQ54E/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810457 SAMN23613139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-C8S5A5T8A/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810458 SAMN23611871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-CAV22EB33/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810459 SAMN23613138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CA6PQCCTS/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810460 SAMN23611716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CB39H8YMB/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810461 SAMN23612238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CCX5F54JX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810462 SAMN23611715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CBYQBE9VV/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810463 SAMN23613067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RNCH86R44/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810464 SAMN23612016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-RQ2PQB9HH/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810465 SAMN23612641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RNEFKCJS7/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810466 SAMN23611595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-RPSE3XJXP/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810467 SAMN23613320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-RRUNHFJXZ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810468 SAMN23612461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-RS3VJN6TR/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810469 SAMN23611811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-RSCNH3GD2/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810470 SAMN23611594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-RSNZHT3M3/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810471 SAMN23611593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-RSS7JDYQ9/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810472 SAMN23612639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RT7DC2DX9/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810473 SAMN23612638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RTF4ZHE4K/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810474 SAMN23612640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RSRR6E7ZY/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810475 SAMN23612637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RUQU9ZMJ8/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810476 SAMN23611592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-RUUBBK5RU/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810477 SAMN23612636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RVBWHWRBE/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810478 SAMN23612015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-RWM7E57BY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810479 SAMN23613319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-RY4KY8J8V/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810480 SAMN23613066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RXRUVZAW6/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810481 SAMN23612635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RWZRTMJTY/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810482 SAMN23612634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RYUR95WXK/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810483 SAMN23612933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-RZYF6J85F/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810484 SAMN23611591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-S366JTCQF/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810485 SAMN23611590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-S3935BFZY/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810486 SAMN23611589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-S4G853N7T/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810487 SAMN23612633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-S4JSTSABF/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810488 SAMN23613215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-S59AVQ4V9/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810489 SAMN23611862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-PJFBATW99/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810490 SAMN23612058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PM26SXTNZ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810491 SAMN23612656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-PPEAAARE9/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810492 SAMN23611612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-PMB8AMZSB/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810493 SAMN23612655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-PPHA3AAR5/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810494 SAMN23612468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-PPWSYEUV3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810495 SAMN23612057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PPZBYUPJ3/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810496 SAMN23611425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-PQDS34PAJ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810497 SAMN23613327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-PQR85HVF4/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810498 SAMN23612056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PQS686VJ8/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810499 SAMN23612055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PQV4YC593/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810500 SAMN23611611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-PSRY35EM9/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810501 SAMN23611861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-PT8XNZEH7/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810502 SAMN23613077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PTR64ZXHH/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810503 SAMN23612054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PTAB3SJHZ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810504 SAMN23613326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-PUKRTE6GR/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810505 SAMN23612053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PUWCF9EF6/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810506 SAMN23612052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PVAKDEUE7/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810507 SAMN23612467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-PVPDF2KGN/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810508 SAMN23613076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PVT44N75C/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810509 SAMN23612937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-PVUK2GP5Z/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810510 SAMN23612051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PWKGCQBDZ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810511 SAMN23611742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9R5GREQZP/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810512 SAMN23613158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9R8PFSJFS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810513 SAMN23611476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-9R9R23VCT/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810514 SAMN23612772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9S5J75TAM/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810515 SAMN23611741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9STGNQG7D/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810516 SAMN23613370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-9TGYYVZMZ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810517 SAMN23613157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9UFV8XEVU/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810518 SAMN23612771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9US5WBBJB/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810519 SAMN23612273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9UV8EMBDS/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810520 SAMN23613156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9UWYMPF99/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810521 SAMN23613369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-9VEB9RW5F/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810522 SAMN23612770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9VQPR62SS/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810523 SAMN23612272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9VU7VGSY9/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810524 SAMN23613155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9WVMATUUN/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810525 SAMN23612897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-9WNYF6JM5/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810526 SAMN23612769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9YEWKE6TK/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810527 SAMN23612271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9YKUA7UX8/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810528 SAMN23612896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-9ZEMWR8HE/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810529 SAMN23611833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-A2FC3J9V3/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810530 SAMN23611740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-A32XHCYJP/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810531 SAMN23611739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-A4A2AZX98/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810532 SAMN23613154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-A44ZM9X3B/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810533 SAMN23612270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-A4AU3FCMD/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810534 SAMN23612768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-A4BPCN6MN/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810535 SAMN23613267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-A4H6QV4DJ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810536 SAMN23611875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-A4VHCYE4E/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810537 SAMN23613153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-A56J5BPM4/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810538 SAMN23612269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-A5AAFMEPK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810539 SAMN23612895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-A5DYKF6U3/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810540 SAMN23611738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-A5V9G8B9M/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810541 SAMN23613266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-A5NVCZYM5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810542 SAMN23612767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-A65HVYJ2G/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810543 SAMN23611382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WV-CDC-STM-A6V4WV4UV/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810544 SAMN23611737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-A6ZRUMZZY/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810545 SAMN23612268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-A7G8UZEDE/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810546 SAMN23613265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-A8GZ8TGBZ/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810547 SAMN23612766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-A8XNX2DP5/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810548 SAMN23613368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-A8MSECX9J/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810549 SAMN23611512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-A9K7NR9PS/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810550 SAMN23612894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-A9M7C6WAS/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810551 SAMN23612765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-A9P3BKECN/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810552 SAMN23612267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AA69K76QN/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810553 SAMN23611874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-AAF8XAQE8/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810554 SAMN23612266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AAVV7HW6K/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810555 SAMN23613264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-AD4J2JP9P/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 96 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810556 SAMN23612265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ADM9C39DU/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.99.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810557 SAMN23611736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ADCV2CD75/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810558 SAMN23613263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-ADMH4QR22/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810559 SAMN23612263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AEQ4X3RTR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810560 SAMN23612264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AEB4Q6W4P/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810561 SAMN23611735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-AHWHCY29F/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810562 SAMN23612764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-AFHTHNV8G/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810563 SAMN23612763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-AJCEP27K5/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810564 SAMN23612262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AJBJY9BP3/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810565 SAMN23612979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-AJTG8ZVSB/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810566 SAMN23613152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AJTQGCAXF/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810567 SAMN23612261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AMFZJPVTJ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 64 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810568 SAMN23611734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-AKG8EFMYX/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810569 SAMN23612260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AMGUADENR/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810570 SAMN23611475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-AN532BQTA/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810571 SAMN23613151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AN2WPCGT6/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810572 SAMN23612259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ANDM9JK7F/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810573 SAMN23611474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-ANQYDM9RA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810575 SAMN23612237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CDE2VCH6Y/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810576 SAMN23613137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CDM5KK32G/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810577 SAMN23611714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CDTM57T67/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810578 SAMN23613136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CDX9GJ9B4/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810579 SAMN23612236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CE8WYHQ38/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810574 SAMN23611841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-AQ4B25FU4/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810580 SAMN23612235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CEAWE9P4R/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810581 SAMN23612514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-CEQJT523Q/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.86 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810582 SAMN23611465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-CFF5X6HH6/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810583 SAMN23613135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CG55UM278/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810584 SAMN23611713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CGMCFM3UC/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.98.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810585 SAMN23612234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CGDQB8YRU/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810586 SAMN23612233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CGMY3EZDZ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810587 SAMN23612890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-CGWZT6928/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810588 SAMN23611712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CHBTR56P4/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810589 SAMN23611711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CHVS85BX7/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810590 SAMN23612232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CHQXWX2DZ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810591 SAMN23611464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-CJFZZSDDM/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810592 SAMN23612747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-CJWNVMZ5R/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810593 SAMN23612231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CJXB2F8EE/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810594 SAMN23612748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-CJTPSK7WN/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810595 SAMN23612230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CPZAV3BRF/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810596 SAMN23612889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-CKFHWX7MF/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810597 SAMN23612513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-CKVT8D5AX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810598 SAMN23612746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-CQ62HH5WK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810599 SAMN23613259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-CQZGMZ4TZ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810600 SAMN23612745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-CR5R38ZTX/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810601 SAMN23611710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CRBJUWKE4/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810602 SAMN23612512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-CSR9Z88UE/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810603 SAMN23612744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-CSC7DRT2T/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810604 SAMN23612974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-CU7AM2UC5/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810605 SAMN23613258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-CUXVDCDDU/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810606 SAMN23613134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CU8VFCFFK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810607 SAMN23613124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ENZSHGYG2/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810608 SAMN23612192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ER7ZGGZD8/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810609 SAMN23612726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-ERW47369U/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810610 SAMN23611455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-EQ945YB22/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810611 SAMN23612191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ESMDNWTGV/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810612 SAMN23611817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-ERWUQSY52/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810613 SAMN23612190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ESSRS3GB3/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810614 SAMN23612966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ETW5JJB79/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810615 SAMN23612725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-EWEE4YP98/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810616 SAMN23613359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-EWC79855M/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810617 SAMN23613218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-EVQTR4JFN/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810618 SAMN23613213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CT-CDC-STM-EWNKBS2JR/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810619 SAMN23612724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-EWP33VUDV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810620 SAMN23612189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-EX6JV99TX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810621 SAMN23613123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EX7JCCWGX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810622 SAMN23611869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-EXAGWX2YA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810623 SAMN23612965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-EXK33YVPS/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810624 SAMN23611693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-EYA95ZEKV/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810625 SAMN23612502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-EZNY729QV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810626 SAMN23613358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-F2BTBTFDF/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810627 SAMN23612188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-F2FNTV3XG/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810628 SAMN23613357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-F2XQKQBJ9/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810629 SAMN23611454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-F3F95CDWV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810630 SAMN23611690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-F5KSAF6UR/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810631 SAMN23612723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-F5ZZ8ZWJ5/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810632 SAMN23611691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-F579RVJKM/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810633 SAMN23611692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-F4TMTFBSH/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810634 SAMN23612187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-F6ZC8VWKR/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810635 SAMN23613122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-F72UZXGGK/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810636 SAMN23611453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-F7UPBCGWA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810637 SAMN23611689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-F7WPGR8A5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810638 SAMN23612964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-F86UA9FTP/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810639 SAMN23612452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-U7KMK65UJ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810640 SAMN23611971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-U7YNTYRSV/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810641 SAMN23611970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-U82DVDU5X/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810642 SAMN23611969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-U9A47TFNG/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810643 SAMN23611416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-U9DRZMFQD/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810644 SAMN23611415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-UA7ZA4F7D/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810645 SAMN23613234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UA2DA4J7M/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810646 SAMN23612619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UAB8V8TDP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810647 SAMN23611968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UAFF7MUKT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.98.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810648 SAMN23612618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UAEABSDBE/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810649 SAMN23613048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UAGC6E6DC/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810650 SAMN23612617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UB7MEK9VZ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810651 SAMN23612616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UB7UCDXD3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810652 SAMN23611967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UBC7DNTC6/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810653 SAMN23612615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UBJWJ57NE/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810654 SAMN23613233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UC6555ED3/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Black collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810655 SAMN23612614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UCKCX54FK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810656 SAMN23612451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-UDCUCEHMZ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810657 SAMN23611966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UDUEMHE28/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810658 SAMN23613047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UDEPJPTRQ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810659 SAMN23612613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UE6T2QF8W/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810660 SAMN23611965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UFWAQM6RD/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810661 SAMN23611964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UG9DYPVYW/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810662 SAMN23612450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-UEEZJG93U/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810663 SAMN23611569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-UFA2XCZPA/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810664 SAMN23613309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-UGA6XQNQQ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810665 SAMN23611963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UGDF9Z7NY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810666 SAMN23613232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UGWEND7Q2/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810667 SAMN23613046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UHXHACP79/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810668 SAMN23612612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UJ5ZR8AR3/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810669 SAMN23611962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UJSTGQWBB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810670 SAMN23611414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-UJTSEGV86/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810671 SAMN23611939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VZBXQZENB/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810672 SAMN23611852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-VXTAFUNSG/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810673 SAMN23612594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-VYXBYE6WS/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810674 SAMN23612593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-VZX489ARG/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810675 SAMN23611405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-VZY472J72/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810676 SAMN23613228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-W23P23AU8/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810677 SAMN23612440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-W2J74BCFV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810678 SAMN23611938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-W32YEU5PD/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810679 SAMN23612419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-W2KHKXJS2/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810680 SAMN23613035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-W4W9MTTND/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810681 SAMN23613036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-W36ZG2QBP/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810682 SAMN23612592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-W547N22JY/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810683 SAMN23612591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-W656A6UKN/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810684 SAMN23613306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-W6YART8R4/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810685 SAMN23611937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-W7GZU4PZ2/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810686 SAMN23611935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WA9BSYPNG/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810687 SAMN23611936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-W9785U2DK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810688 SAMN23613305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-W7J5XTP6G/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810689 SAMN23613304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WAY3AU6RM/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.75 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810690 SAMN23613303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WBARSZNVF/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810691 SAMN23611404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-WC7SG3GKP/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810692 SAMN23611555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WCTJVSXFC/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810693 SAMN23611933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WD3KE5RQX/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810694 SAMN23613227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-WCY9GAPN7/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810695 SAMN23611934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WCVRES9ZD/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810696 SAMN23611932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WD4PJ8XVN/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810697 SAMN23613302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WDQSMTMY4/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810698 SAMN23611931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WEU94QHGK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810699 SAMN23611930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WFGFSRPTX/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810700 SAMN23611929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WFZ25DKCV/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810701 SAMN23611554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WGCYD7MK9/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810702 SAMN23611553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WGNUSXKJC/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810703 SAMN23611538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XUJZ8TDQ5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810704 SAMN23611903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XVMFSJVYM/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810705 SAMN23611904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XUXV6UN37/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810706 SAMN23612577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XW9X5BDMP/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810707 SAMN23613026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XW9UY5HMB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810708 SAMN23611400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-XWCG6BG4P/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810709 SAMN23611399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-XWDV7BT56/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810710 SAMN23612544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-XWHPMFM5M/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810711 SAMN23611537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XXFTS7KFX/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810712 SAMN23612576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XXRKR6JRW/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810713 SAMN23612920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XXSU85DMP/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810714 SAMN23612575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XY4TD3GB4/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810715 SAMN23611536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XYBZ3V8YJ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810716 SAMN23612574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XYJ2Z3QEZ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810717 SAMN23611902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XYY6MJ684/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810718 SAMN23612573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XZ6RD4TMZ/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810719 SAMN23611846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NH-CDC-STM-XZTVPZK7J/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810720 SAMN23612572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Y23DQCEFX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810721 SAMN23611535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-Y2UCH2FSW/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.75 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810722 SAMN23612571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Y3D45X6SA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810723 SAMN23611901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Y3RGN6NS6/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810724 SAMN23611534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-Y4HMGDC38/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810725 SAMN23611533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-Y4JBNDBC3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810726 SAMN23613223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Y5E9JM8X5/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810727 SAMN23612851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-Y5FRFNMAP/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810728 SAMN23613292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-Y656JAV5X/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810729 SAMN23612570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Y6KD95PTV/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810730 SAMN23612569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Y6WN2TWDG/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810731 SAMN23612919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-Y7UVPCJEE/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810732 SAMN23613025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Y8T5EDT5A/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810733 SAMN23611900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Y97NNMT7K/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810734 SAMN23612568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YA7KNMBGR/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810735 SAMN23612335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6DNVSWYDU/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.124 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810736 SAMN23612996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6EN9U8UX5/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810737 SAMN23612334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6EA5A7FWP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810738 SAMN23613181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6ENCPK797/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810739 SAMN23612806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-6FQF4UBFH/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810740 SAMN23613546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-6GHZXN5CP/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810741 SAMN23612995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6HT6GRH8Z/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810742 SAMN23612805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-6HTTBHVK5/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810743 SAMN23611772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-6J8DYNZFM/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810744 SAMN23611485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-6JDWS74XR/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810745 SAMN23612547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-6KB9X2TXN/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810746 SAMN23611384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-6KCZAXXRN/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810747 SAMN23613545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-6KHRG7WUX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810748 SAMN23612333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6MG88ZRMQ/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810749 SAMN23611484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-6MGN3NC37/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810750 SAMN23612332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6N5WXEKFD/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810751 SAMN23613180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6NSDFJ6GY/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810752 SAMN23611509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-6QSKYGF2W/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810753 SAMN23612331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6QUSD6U8Y/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810754 SAMN23612804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-6RBC9QNMR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810755 SAMN23612994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6RU6H3TZZ/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810756 SAMN23613179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6SR7C8F59/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810757 SAMN23613178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6SX288FVA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810758 SAMN23612329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6T6S2PZG4/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810759 SAMN23612328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6TYH7VYEB/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810760 SAMN23612330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6T42U4DY4/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810761 SAMN23611483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-6V3KN8U64/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810762 SAMN23612327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6V47RRMDF/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810763 SAMN23612326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6VQGWS73B/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.98.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810764 SAMN23611771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-6VZYZ36WD/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810765 SAMN23611444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-H4M78SMYX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810766 SAMN23611830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-6WSRHJ9RU/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810767 SAMN23612803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-6X2HH8MJU/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810768 SAMN23612148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-H5AEBRA7G/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810769 SAMN23612709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-H6C5B298R/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810770 SAMN23613252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-H5M367VWZ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810771 SAMN23612710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-H5YTAM6E9/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810772 SAMN23611665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-H6CXGTZZ9/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810773 SAMN23612147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-H6WU3EGST/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810774 SAMN23611443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-H6G9YG7ED/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810775 SAMN23613352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-H6NJU8H8H/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810776 SAMN23613105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-H77CX8DNT/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810777 SAMN23612956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-H7CP4DRJX/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810778 SAMN23613351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-H7CB4X7PP/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810779 SAMN23613104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-H7YRBKU6F/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810780 SAMN23611825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-H8372UFDS/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810781 SAMN23611442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-H8DF2QCW9/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810782 SAMN23611664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-H8S2C9GF4/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810783 SAMN23611663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-H9RE79FKQ/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810784 SAMN23613103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HA8A6R3ZS/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810785 SAMN23612708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HASDWPYCQ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810786 SAMN23612146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HBS4QEV5A/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810787 SAMN23612707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HC25YCPBY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810788 SAMN23612706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HC3KVQFBP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810789 SAMN23611849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-HCVBH35VQ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Not Provided collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810790 SAMN23612144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HD3NDUSNC/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810791 SAMN23612145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HC733AKAZ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810792 SAMN23612955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-HDJWGPMPS/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810793 SAMN23613251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-HDG69XK6K/2021 collected_by 'Helix' collection_date 2021-11-23 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810794 SAMN23613350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-HEW7NRAB4/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810795 SAMN23613250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-HEP39VYZJ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810796 SAMN23612143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HF3HB8GQV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810797 SAMN23612142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HFQACEXSH/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810798 SAMN23612947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-K3ANGN3EQ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810799 SAMN23612483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-K3E73JQUH/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810800 SAMN23612705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HG8ASPZG6/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810801 SAMN23613342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-K42N4X42U/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810802 SAMN23613216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-K4EHG2CU3/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810803 SAMN23613096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-K62ZZT5B5/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810804 SAMN23611644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-K6CZCD2AG/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810805 SAMN23612946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-K6ENAD8JX/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810806 SAMN23611515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-K6P8EYV6M/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810807 SAMN23613341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-K93XX5B52/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810808 SAMN23611643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-K7MUQYMA6/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810809 SAMN23612482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-K8ZSDJ5VA/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810810 SAMN23612126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-K9SXKAVT3/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810811 SAMN23613095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KAF9NKC8A/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810812 SAMN23612125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KB4MGG6KX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810813 SAMN23611642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-K9X83BXCK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810814 SAMN23613094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KB8XWUMX3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810815 SAMN23612690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-KB7UABDCJ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810816 SAMN23612124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KBK2NRPTS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810817 SAMN23611641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-KBKYJQ2D2/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810818 SAMN23612123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KCC88XMDV/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810819 SAMN23611640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-KCFBUCAZ7/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810820 SAMN23613093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KDCP5WWHH/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810821 SAMN23613340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-KDM7HP98T/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810822 SAMN23612122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KCRBXYFJZ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810823 SAMN23612120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KDY9MP39G/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810824 SAMN23612121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KDWPP2JTQ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810825 SAMN23611437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-KDZ43T3NV/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810826 SAMN23612119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KDZ92XYZC/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810827 SAMN23613339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-KES65HGTC/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810828 SAMN23612689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-KFTBJTB39/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810829 SAMN23611639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-KETHHC77R/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810830 SAMN23611638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-KFUTFXJ9T/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810831 SAMN23613318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-S669RGDBT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810832 SAMN23613065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-S6PYAVGPY/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810833 SAMN23612014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-S7JNT475Z/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810834 SAMN23611588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-S855E64GE/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810835 SAMN23613317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-S8CUJKHGX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810836 SAMN23611421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-S8FF9XMRF/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810837 SAMN23612001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SSGFZG4RT/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810838 SAMN23613059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SSP45FEGQ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810839 SAMN23612000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SSY7TZTRW/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810840 SAMN23611583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-STBR4URNT/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810841 SAMN23613058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-STFVWK3KX/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810842 SAMN23612548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KS-CDC-STM-STNQXTNTY/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810843 SAMN23612459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-SUK64VY3N/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810844 SAMN23612458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-SUS86WNR8/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810845 SAMN23612457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-SV2TVFM7N/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810846 SAMN23611858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-SVRQQY9BP/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810847 SAMN23611999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SV7BYF89G/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810848 SAMN23613057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SW72HUS4J/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810849 SAMN23613316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-SWECHW34P/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810850 SAMN23613315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-SWRK5P9VX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810851 SAMN23612628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-SWX77BMUT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810852 SAMN23612627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-SWY2UFEMM/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810853 SAMN23611998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SX8DQJG8C/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810854 SAMN23613314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-SY9XHPDF8/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810855 SAMN23611857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-SXFPD4ZN2/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810856 SAMN23611997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SY9YE4X92/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.54 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810857 SAMN23611582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-SYJTHNVG2/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810858 SAMN23612456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-SYK8C7G6P/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810859 SAMN23612545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-SZ25QUS2D/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810860 SAMN23613056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SYPUTANDN/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810861 SAMN23612626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-SYY9ZZRA7/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810862 SAMN23612931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-SZBENBAJ3/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810863 SAMN23611995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SZRQGH9TJ/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810864 SAMN23611996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SZN4UB9PW/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810865 SAMN23611994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-T2Q3QV7KT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810866 SAMN23612625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-T4S3NTEZM/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810867 SAMN23611993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-T44HEUYDP/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810868 SAMN23611418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-T3ZUNQ7Z7/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810869 SAMN23613311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-TQX94X97W/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810870 SAMN23611984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TQVUYMKY8/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810871 SAMN23611983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TRGYF6SPB/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810872 SAMN23611575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TRJEZYHS5/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 92 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810873 SAMN23612454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-TQZ2ZDTUE/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810874 SAMN23611982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TRT82AYVY/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810875 SAMN23612621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-TRPXD2BQH/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810876 SAMN23611574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TT26RQT2N/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810877 SAMN23611573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TT4ZUPX98/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810878 SAMN23611981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TT5974FQA/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810879 SAMN23611980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TTGP4Z5M7/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810880 SAMN23613052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TVES7H6TX/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810881 SAMN23613051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TVSEBGWSN/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.107 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810882 SAMN23611979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TVSTEBQEK/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810883 SAMN23611978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TWCB56G68/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810884 SAMN23611977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TXKBNJGMB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810885 SAMN23612930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-TXZ3FWZFK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810886 SAMN23613050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TXVR7DXQT/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810887 SAMN23613310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-TY5C7U3P2/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810888 SAMN23611572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TYKWFXMUE/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 26 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810889 SAMN23611976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TZQE6WEX8/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810890 SAMN23612453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-TZGT4MJ9N/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810891 SAMN23611975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-U32KFA22N/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810892 SAMN23611571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TZUQMKR35/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810893 SAMN23613235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-U46CH9UM6/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.95 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810894 SAMN23611974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-U36SHMH9W/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810895 SAMN23611973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-U4NJP9UZE/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810896 SAMN23612620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-U5UYYU7AP/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810897 SAMN23611972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-U4U5V3M4C/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810898 SAMN23613049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-U5WEZ4GJH/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810899 SAMN23612858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-U7CBS6CMZ/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810900 SAMN23611570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-U65RTRFDR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810901 SAMN23611792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-48UP2GR4S/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810902 SAMN23613558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-48H3N3PRB/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.114 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810903 SAMN23611791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-48W9UG692/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810904 SAMN23611790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-4956373HB/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810905 SAMN23612379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-496H2R2FS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810906 SAMN23613277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-49VCARXYM/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810907 SAMN23612378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-49ZM5PNPN/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810908 SAMN23612377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4A2PG4TC8/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810909 SAMN23613276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-4AEJYTDN6/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810910 SAMN23611789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-4ABWMY9NH/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810911 SAMN23613557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-4ATB48KVM/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810912 SAMN23612538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-4B2VY3P6N/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810913 SAMN23612829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-4B3R28GZ2/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810914 SAMN23612828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-4BVHDJDWE/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810915 SAMN23612827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-4CC7A9K37/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810916 SAMN23613002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-4CETARCA7/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810917 SAMN23612826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-4D4VTH2HA/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810918 SAMN23612376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4DRYFW97E/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810919 SAMN23612537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-4DW5JY7TF/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810920 SAMN23613199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4EGUF5X59/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810921 SAMN23611390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-4FRWXY5UG/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810922 SAMN23613198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4EMFAUMSW/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810923 SAMN23611821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-4FVRHFFE5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810924 SAMN23612375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4G9MBPK42/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810925 SAMN23612374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4H3HNPJJU/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810926 SAMN23612825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-4HBVPTUHH/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810927 SAMN23611498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-4J98TP54T/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810928 SAMN23612905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-4HY8485ZB/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810929 SAMN23613197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4K2WQBBDB/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810930 SAMN23612373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4KTEQ6PF3/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810931 SAMN23611497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-4KTA9FBMD/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.100 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810932 SAMN23613196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4KZPSJMRW/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810933 SAMN23613041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VEY9289EA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810934 SAMN23611944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VDVJYNFT2/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810935 SAMN23613040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VFAA5RDMZ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810936 SAMN23611561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-VFHNDVQPE/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810937 SAMN23613039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VG9HCB94T/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810938 SAMN23613307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-VGJJWFP8Z/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810939 SAMN23611854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-VGP43NRHS/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Not Provided collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810940 SAMN23611943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VGVK65QWW/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810941 SAMN23611942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VGZGH92Y9/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810942 SAMN23611407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-VHXA9KHDK/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.111 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810943 SAMN23612928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-VHZP6T6DK/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810944 SAMN23612445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-VJA6FG9AY/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810945 SAMN23611560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-VJJ6GUJVC/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810946 SAMN23611853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-VJJX6D59Q/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810947 SAMN23612444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-VKAHS6V8H/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810948 SAMN23611941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VM3PMD28N/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810949 SAMN23612927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-VKJJSHBGC/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810950 SAMN23611406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-VQ835UESQ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810951 SAMN23613038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VR8EH4BRD/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.73 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810952 SAMN23611940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VRBPYQNNG/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810953 SAMN23612443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-VRPUER48E/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810954 SAMN23611559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-VSG2BJWKV/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810955 SAMN23613229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-VRNE75PX9/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810956 SAMN23611558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-VSHA5A62D/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810957 SAMN23612926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-VTJAWGDW6/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810958 SAMN23613037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VTPWZ467H/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810959 SAMN23611556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-VUXQA6VDY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810960 SAMN23612596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-VV2MXFYN5/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810961 SAMN23611557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-VUP7V5985/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810962 SAMN23612442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-VV5CS3MZE/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810963 SAMN23612595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-VVCYKDA77/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810964 SAMN23612441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-VXRA3WP4E/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810965 SAMN23611788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-4MJQ433W2/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810966 SAMN23612904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-4PCVVNE6A/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810967 SAMN23611787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-4MWEJGY7Z/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810968 SAMN23611786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-4R498SEEJ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810969 SAMN23612903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-4RESQUN54/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810970 SAMN23612372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4RCRVP8JW/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810971 SAMN23612902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-4RTUHA982/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810972 SAMN23612370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4S54WFEDA/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810973 SAMN23612371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4RUGM4A6J/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810974 SAMN23613195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4T2JYR45P/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810975 SAMN23611785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-4TNZC7CQ7/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.98.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810976 SAMN23612369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4SU2UNAAF/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810977 SAMN23611784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-4UAMCY8BY/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810978 SAMN23611496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-4V5B3W2Z2/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810979 SAMN23613194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4UQEWMHCU/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810980 SAMN23612535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-4WU7XF6C8/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810981 SAMN23612536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-4VW6H826E/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810982 SAMN23612824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-4X2C8YKZM/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810983 SAMN23612368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4XKFW3BCA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810984 SAMN23611783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-4XMFH38MR/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810985 SAMN23611518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-4XMYMXUPA/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810986 SAMN23612367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4XQ9HSTE7/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810987 SAMN23612366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4XTBFMBRC/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810988 SAMN23611495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-4Y6VEVNDW/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810989 SAMN23613193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4Z6525BSF/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810990 SAMN23611782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-52BYHAENS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 12 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810991 SAMN23613192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-52AR8HZP7/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810992 SAMN23613556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-4ZM2WHJW9/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810993 SAMN23613555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-52WM9HMKN/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810994 SAMN23613554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-53B8AZVBC/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810995 SAMN23612823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-547QCB6FT/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810996 SAMN23612365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-54EHTJW6P/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810997 SAMN23611913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XCY8FQENM/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810998 SAMN23611851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-XDAEDXYYK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12810999 SAMN23611542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XE4QKN37W/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811000 SAMN23611912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XEHNUQGYF/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811001 SAMN23612584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XEHSU3T5Q/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811002 SAMN23611911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XES2KJWS8/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811003 SAMN23611910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XFEUAPDG5/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811004 SAMN23612433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-XF8ABWNAC/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811005 SAMN23612583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XFQRFKEHP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811006 SAMN23613027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XG7SKQ986/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811007 SAMN23613294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-XG8BWSK8B/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811008 SAMN23613293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-XGZQ4TZ4U/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811009 SAMN23612432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-XHBZ8EAU7/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811010 SAMN23611541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XH39PD57C/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811011 SAMN23612852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-XKTQP3RBQ/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811012 SAMN23611909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XNE3ARBQ6/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811013 SAMN23611540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XP5WZM2D6/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811014 SAMN23613225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-XPCAHTPK6/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811015 SAMN23612582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XPFDNEQQ3/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811016 SAMN23612581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XPHV6J5M6/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811017 SAMN23611908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XPGUBR5R8/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811018 SAMN23611539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XQFJNCWN8/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811019 SAMN23612580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XQ4Z9G44A/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811020 SAMN23611907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XRWPUVM3Q/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811021 SAMN23611906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XSA942BJW/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811022 SAMN23611402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-XQU2F3KTK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811023 SAMN23611905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XSFPNM5UY/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811024 SAMN23612431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-XSNSBPCG7/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811025 SAMN23612579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XSUDRT5KZ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811026 SAMN23612578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XU537S3RJ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811027 SAMN23611401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-XSS2MZ33H/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811028 SAMN23613224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-XUG3SXBK2/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811029 SAMN23611488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-62SN9MFVX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811030 SAMN23613273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-634QG49HX/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811031 SAMN23613550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-6364BJ2YU/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811032 SAMN23613000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-63FQMVH9K/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811033 SAMN23611774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-63MKS47MQ/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811034 SAMN23612812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-659CUF9C2/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811035 SAMN23611487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-63TX2UFGV/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811036 SAMN23612811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-65BM348QR/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811037 SAMN23612344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-64T5EYWXF/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811038 SAMN23612810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-65CRCMEGQ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811039 SAMN23613184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-65TTE488Q/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811040 SAMN23613549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-65UZJX8FG/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811041 SAMN23612808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-66S6RPAQD/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811042 SAMN23612809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-6698ZYZBU/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811043 SAMN23611486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-673EMY98E/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811044 SAMN23612343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6758UFCAE/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811045 SAMN23612807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-676HEKTU8/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811046 SAMN23612342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6775GTVK2/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811047 SAMN23612999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-68JZEPCXY/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811048 SAMN23612341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-68KF9EMXD/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811049 SAMN23612340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-693JHGGRG/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811050 SAMN23612338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6995AXBUQ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811051 SAMN23611773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-696BM7CVM/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811052 SAMN23612339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-695J3EE76/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811053 SAMN23613183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-69JDEU9EZ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811054 SAMN23612337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-69RHDA7HJ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811055 SAMN23612336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6A6A6PGHT/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811056 SAMN23613548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-6AJRWACTY/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811057 SAMN23613182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6AR7GAFTS/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.95 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811058 SAMN23612998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6CZN5YXCA/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811059 SAMN23612997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6D5CKW9QU/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811060 SAMN23613547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-6D63PF63Z/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811061 SAMN23613112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-G3JU78KC3/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811062 SAMN23612164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-G4KRSDUSE/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811063 SAMN23611680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-G3YWGRFJM/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811064 SAMN23612163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-G4UV7BYPR/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811065 SAMN23612165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-G48NPEHG9/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811066 SAMN23612496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-G5JPRF6WE/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811067 SAMN23611679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-G66PQ4JRP/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811068 SAMN23612881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-G67EDBZ5P/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811069 SAMN23612959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-G6DGCH6AX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811070 SAMN23612714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-G7BBYMNU8/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811071 SAMN23611678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-G8B4T7CDZ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811072 SAMN23613254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-G8PW8NR56/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811073 SAMN23613253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-G9EKKN76C/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811074 SAMN23611677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-G9Y64TD6W/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811075 SAMN23611449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-GBFFSGQQB/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811076 SAMN23612162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GARHCGUZV/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811077 SAMN23611448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-GCDYEJPFV/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811078 SAMN23613111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GDC6TXNX7/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811079 SAMN23611676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GDQGCB82S/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811080 SAMN23613110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GDHHYF8F3/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811081 SAMN23611675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GDZFM4ZCA/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811082 SAMN23612495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-GF68YMXGR/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811083 SAMN23611447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-GF492JR34/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811084 SAMN23612958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-GDVQHEJMQ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811085 SAMN23611674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GFJREAT23/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.69 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811086 SAMN23612161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GFKJA5MZX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811087 SAMN23612494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-GG6GWNEQM/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811088 SAMN23612160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GGV83KR2Q/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811089 SAMN23612713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-GGXDKJPG5/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811090 SAMN23612158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GJEEFH75E/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811091 SAMN23612159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GHBKYWYA5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811092 SAMN23612712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-GJGVQR6UT/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811093 SAMN23613087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N356WCZCY/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.98 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811094 SAMN23613563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-N3WJP3YHY/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811095 SAMN23611630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-N3N4JD4EJ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811096 SAMN23611432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-N4Z9TXMT9/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811097 SAMN23612871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-N5UWGPT76/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811098 SAMN23611629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-N64TBA8X6/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811099 SAMN23612870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-N6696DEAY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811100 SAMN23612671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-N6KT5TH76/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811101 SAMN23612475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-N6TRTK3HZ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811102 SAMN23613086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N6PUPNP9J/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811103 SAMN23612670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-N7AK9K7GT/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811104 SAMN23611431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-N7E2FV42S/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811105 SAMN23612669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-N7G9R4DY8/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811106 SAMN23612081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-N8ESRCGMB/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811107 SAMN23612668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-N7Z6V52EB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811108 SAMN23612080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-N8F5KWNYA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811109 SAMN23612078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-N9ZNPKUF8/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811110 SAMN23612077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NAPANZ62T/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811111 SAMN23612079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-N8PNT454Q/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811112 SAMN23613245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-NBW6MKXHR/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811113 SAMN23612667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-NCD6DP53M/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811114 SAMN23611628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NCERDQ7U3/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811115 SAMN23612666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-NCN8R8TUZ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811116 SAMN23612474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-NDDBVKTPR/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811117 SAMN23612941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-NDZ9QCM83/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811118 SAMN23611381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WV-CDC-STM-NFRKMVX7N/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811119 SAMN23612076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NFSJZEEXG/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811120 SAMN23613085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NGGETV8HH/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811121 SAMN23611627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NGKU9A6B9/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811122 SAMN23611430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-NJRWS8Y36/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811123 SAMN23612940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-NJXEDNQRG/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811124 SAMN23611865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-NKMEV9ZRW/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811125 SAMN23612981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-99JXS4UN3/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811126 SAMN23611748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-99VEZC8T9/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811127 SAMN23612278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9CYFZGQQU/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811128 SAMN23612780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9B33JA4ZH/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811129 SAMN23612779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9D8Q257W6/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811130 SAMN23612778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9F7N3HN58/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811131 SAMN23611747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9FA7TA8DG/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.107 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811132 SAMN23612520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-9DCCPRU6X/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811133 SAMN23612277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9FSHUNDW9/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811134 SAMN23612911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IA-CDC-STM-9GAR46ZMW/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811135 SAMN23612276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9GATRYRHH/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811136 SAMN23611746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9GWE7WEXP/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811137 SAMN23612777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9H2M4959R/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811138 SAMN23612980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-9JWC7ZHN8/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811139 SAMN23613373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-9JWVFHXVN/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811140 SAMN23613159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9K8MH6C6N/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811141 SAMN23611479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-9K83ZJKS2/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811142 SAMN23612275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9KFFU3ZK6/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811143 SAMN23612776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9KVXRTRDM/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811144 SAMN23612519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-9M5B6RW8M/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811145 SAMN23611478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-9MCAGYCY3/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811146 SAMN23613372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-9M9NR4RED/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811147 SAMN23612775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9MGJ44TN3/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811148 SAMN23611745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9MP3QRBHM/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811149 SAMN23611744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9MYQQQA4U/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811150 SAMN23612274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9NDPUWGBU/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811151 SAMN23612774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9PN7EK5KS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811152 SAMN23613371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-9PUW74JN9/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811153 SAMN23612518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-9Q7JUABRP/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811154 SAMN23611477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-9PXD6HM9P/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811155 SAMN23612773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9QDV88WMN/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811156 SAMN23611743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9QWKQ2HWP/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811157 SAMN23612938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-PC6UDZKHD/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811158 SAMN23612867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-PCUSYW4JR/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811159 SAMN23612060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PD3F2VYS9/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811160 SAMN23613329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-PETNFKKK7/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811161 SAMN23612866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-PDQJQ72X9/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811162 SAMN23612059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PF6G7BTCP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811163 SAMN23611426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-PF2AT4TT7/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811164 SAMN23613328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-PHNZDUC8E/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811165 SAMN23612469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-PJ2YXWSGF/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811166 SAMN23611863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-PJ7HP9CPF/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811167 SAMN23612477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-KRMFU8ZPB/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811168 SAMN23612476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-KT22MCX2Q/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811169 SAMN23612114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KS3KJ8GAY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811170 SAMN23612113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KU49MYWMG/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811171 SAMN23613338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-KUJ7767FK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811172 SAMN23612112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KUMKWZEZ9/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811173 SAMN23611388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-KV7YHEGQH/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811174 SAMN23611436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-KWNP7VPVE/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811175 SAMN23612110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KX3YTCHBN/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811176 SAMN23612685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-KX45J78FA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811177 SAMN23612111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KWSD5E3MD/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811178 SAMN23611850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MO-CDC-STM-KXCJRZA63/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811179 SAMN23611637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-KXDGYZNDY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811180 SAMN23612109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KYUQAU884/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811181 SAMN23613337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-KZ9E8ATAD/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811182 SAMN23611814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-KZA73QHJE/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811183 SAMN23612554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-ZHBUZQRDW/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811184 SAMN23613222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-ZHM4YH3XE/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811185 SAMN23612427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-ZHYQP8T65/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811186 SAMN23612915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ZJCBEV7C2/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811187 SAMN23612555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-ZGMKBRYZA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811188 SAMN23613011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZJRJZU969/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811189 SAMN23611888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZJX876ZFZ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811190 SAMN23611887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZK4J6TXRE/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811191 SAMN23612553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-ZKX4Z2NZB/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811192 SAMN23612552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-ZKZETZ6SM/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811193 SAMN23611524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZMFA8DRSG/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811194 SAMN23612914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ZNJ8VXH92/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811195 SAMN23612551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-ZNW6HEDEF/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811196 SAMN23611886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZP9FRCUJ2/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811197 SAMN23613287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-ZN865G2FF/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811198 SAMN23611885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZP9WTMBYE/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811199 SAMN23611884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZPECXG6C8/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811200 SAMN23611883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZPG7RR3FW/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811201 SAMN23611882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZPH9NYCC9/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811202 SAMN23611812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-ZPRYS75UT/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811203 SAMN23613211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CT-CDC-STM-ZPU7NMPKM/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811204 SAMN23612849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-ZRJBB7YQD/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811205 SAMN23613009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZRJQ95X7G/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811206 SAMN23613010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZQVGARU9Y/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811207 SAMN23612848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-ZRPKFMCX4/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811208 SAMN23612913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ZSB7HUJC4/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811209 SAMN23611881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZT3TEDRVJ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811210 SAMN23611523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZTC4VV774/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811211 SAMN23612912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ZTJ36APXB/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811212 SAMN23612550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-ZUSCP9FNS/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811213 SAMN23611880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZXRU6VR5N/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811214 SAMN23613540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-7XENB49EG/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.116.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811215 SAMN23613286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-ZWR9PWNGX/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811216 SAMN23613168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7XRXU9ZM4/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811217 SAMN23611764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-7ZA5NU7EW/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811218 SAMN23612793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-7XRB9UWGR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811219 SAMN23612524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-7ZJY8NKXK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811220 SAMN23613379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-82GBHJKFD/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811221 SAMN23611763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-7ZW6M9ADM/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811222 SAMN23612306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-82H3QCUPQ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811223 SAMN23612305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-82YNXR47E/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811224 SAMN23611762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-82SAT34S9/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811225 SAMN23613270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-837G8C4CY/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811226 SAMN23612792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-838WWAPFG/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811227 SAMN23612523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-84CK2WRM8/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811228 SAMN23612303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-843D2Z4AC/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811229 SAMN23612304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-83X6TAPEE/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811230 SAMN23613167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-84EMZZ6A8/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811231 SAMN23613166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-85HUGQRA9/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811232 SAMN23612302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-85HFJ8SPV/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811233 SAMN23611820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-85RG3NSDT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811234 SAMN23611480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-86QRRZNKP/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811235 SAMN23611819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-87DSAS3BF/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Not Provided collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811236 SAMN23613378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-87U5GVJR6/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811237 SAMN23612301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-88EWQGPRT/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811238 SAMN23612791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-87KPBH8G8/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811239 SAMN23612300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-88KG8SV8S/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811240 SAMN23611761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-89QJE56HA/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811241 SAMN23612522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-89W29JCGH/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811242 SAMN23611760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8AUBWCCN5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811243 SAMN23612790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8AWEH8Y2Q/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811244 SAMN23613165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8B9XMB6UA/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811245 SAMN23612424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-8BGTN6Q48/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811246 SAMN23612789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8BCPZCZWP/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811247 SAMN23612654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-PWY6ZJ4AW/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811248 SAMN23613325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-PX99WMS6V/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811249 SAMN23612466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-PX9MCZZJU/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811250 SAMN23612050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PXXJ5JDTT/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811251 SAMN23613075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PY2YKPS77/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811252 SAMN23612049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PZDWJE49P/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811253 SAMN23612865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-PYFF5FC9Z/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811254 SAMN23612653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Q2G8GTQVB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811255 SAMN23612652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Q2MSAYFFG/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811256 SAMN23613074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Q2UMPA6DB/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811257 SAMN23612651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Q2UU3Z3S7/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811258 SAMN23612048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Q3GHWT5CS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811259 SAMN23613324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-Q35CQR6BJ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811260 SAMN23611860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-Q3RVASC37/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811261 SAMN23612046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Q474QGKKV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811262 SAMN23612936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-Q3RVAVD3A/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811263 SAMN23612047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Q42FNEJ5J/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811264 SAMN23612045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Q4GSMHV88/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811265 SAMN23611424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-Q4U883HHQ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811266 SAMN23612044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Q4P5ZKTWV/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811267 SAMN23612043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Q4UZRC3AB/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811268 SAMN23613242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Q4YH5K2JP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811269 SAMN23612650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Q52H7RHS4/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811271 SAMN23612041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Q5YV4PM72/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811272 SAMN23611387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-Q7AJJ8JRF/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811273 SAMN23612040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Q66R5UJFG/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811274 SAMN23612039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QAAD3FCRU/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811275 SAMN23611610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-Q74SSYSMX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811276 SAMN23612038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QB42YF4WQ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811277 SAMN23612649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QBYU2ZYN5/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811278 SAMN23612935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-QCHZ95W89/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811279 SAMN23612258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AQB955RCM/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811280 SAMN23612762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-AQKF7SCXA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811281 SAMN23611733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-AQKRXJUTS/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811270 SAMN23612042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Q5WHTE8R5/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811282 SAMN23613262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-AQQ6TXWQW/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811283 SAMN23613150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AQYENVBPY/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811284 SAMN23611828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-AR6SC64HD/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811285 SAMN23611517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-ARV64BMYN/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811286 SAMN23612761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-AS924HVDR/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811287 SAMN23611732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ASJC4DD28/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811288 SAMN23613261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-AT4KTV8TW/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811289 SAMN23611473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-AU5VKGVWH/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811290 SAMN23612517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-AU9R55ZQE/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811291 SAMN23611472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-AUXNNESQ3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811292 SAMN23612257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AV72P8TX2/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 94 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811293 SAMN23612256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AVZB4VZUG/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811294 SAMN23612255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AWEGVW2TZ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811295 SAMN23612978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-AWW8HTSYW/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811296 SAMN23613149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AY5Z6S3PV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811297 SAMN23611731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-AYEB4JF74/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811298 SAMN23612760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-AYYBF9X3C/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811299 SAMN23612977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-AZ2YXJ6ZV/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811300 SAMN23612254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-AZH6REV3G/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811301 SAMN23612759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-B2DX8N5KP/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811302 SAMN23612893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-B587NCH53/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811303 SAMN23612253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-B4Q7DSZHZ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811304 SAMN23612758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-B5VJJY6JX/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811305 SAMN23612252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-B7JHT3TGH/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811306 SAMN23611730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-B5YW33F6H/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811307 SAMN23611729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-B85EH5WQV/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811308 SAMN23613148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-B8ACRHQTS/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811309 SAMN23612516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-B8PKH5SMF/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811310 SAMN23612251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-B8TBJ2DUM/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811311 SAMN23613366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-CW22R2A49/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811312 SAMN23612743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-CV8UXYJX9/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811313 SAMN23612511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-CW83EVW3D/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811314 SAMN23612742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-CW9P5KK64/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811315 SAMN23613133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CWMX66JTG/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811316 SAMN23612973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-CWPZKFVF5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811317 SAMN23613365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-CWYSM9JRC/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811318 SAMN23611383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-CX9UCSYCR/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811319 SAMN23612510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-CX9CB6DUW/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811320 SAMN23613132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CXAZGG2AT/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811321 SAMN23612229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CXM4XEFAP/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811322 SAMN23611463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-CXMYG895B/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811323 SAMN23613221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-CXU6BXEJN/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811324 SAMN23611462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-CXVSCK5WQ/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811325 SAMN23612228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CXX7YQJKB/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811326 SAMN23612509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-CYGPPJE6D/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811327 SAMN23613131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CZ2J2WKYN/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.120.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811328 SAMN23611709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CYHM7SFJR/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811329 SAMN23612741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-CZZKU2BX5/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811330 SAMN23613130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CZ7E9CV3P/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811331 SAMN23612227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-D22X86UDG/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811332 SAMN23612226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-D2EGQ23F2/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811333 SAMN23611461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-D2DMN7Q9A/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811334 SAMN23612225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-D3CSABAX2/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811335 SAMN23612740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-D45F6C4XR/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811336 SAMN23613257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-D4BGRSHN2/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811337 SAMN23611460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-D4U6QNJYM/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811338 SAMN23612888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-D4CW5T8TB/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811339 SAMN23611847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NH-CDC-STM-D536Q8GXZ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811340 SAMN23612224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-D57RTVF6T/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811341 SAMN23612739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-D697SD9AD/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811342 SAMN23612223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-D5BGC5GQ4/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811343 SAMN23612218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DMXW5RSX2/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811344 SAMN23612217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DNYYPEBHS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811345 SAMN23613127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DP8RV9JNW/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811346 SAMN23612216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DPNWZ8ZVP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811347 SAMN23613362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-DPHE85AXU/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811348 SAMN23612885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-DRJ3NVNG2/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811349 SAMN23612215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DQSYDUVNY/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811350 SAMN23612506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-DRJ3YC4M6/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811351 SAMN23611699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DRRA7QJKF/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811352 SAMN23612214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DSSFUTBWU/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811353 SAMN23612969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-DT7ARE9XA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811354 SAMN23611457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-DT7RB68GV/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811355 SAMN23612733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DTHKFEXAM/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811356 SAMN23612734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DSVXSGUZ4/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811357 SAMN23613361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-DUF66JNYP/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811358 SAMN23612213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DUC7VQD56/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811359 SAMN23612212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DUPTXDEWP/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811360 SAMN23612211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DV5NU42DX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811361 SAMN23612210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DVDQH96K5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811362 SAMN23611826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-DVUZZ4CAB/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811363 SAMN23611832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-DWEG5MMS5/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811364 SAMN23612732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DWW2BW3NZ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811365 SAMN23612209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DXC24HW8R/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811366 SAMN23612208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DXXD4FFHF/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811367 SAMN23611698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DXGURFUUS/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811368 SAMN23612207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DYEY4KCUC/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811369 SAMN23611697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DZM7XBFZR/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811370 SAMN23612206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-E22RBB2VK/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811371 SAMN23612731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-E2RKCVE4T/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811372 SAMN23611696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-E2X8FT55F/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811373 SAMN23612204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-E38QKVXWV/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811374 SAMN23613207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2R5TXCF6W/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811375 SAMN23612406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2R77WNWWP/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811376 SAMN23612205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-E34AKGVVW/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811377 SAMN23612405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2RQG65BCC/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811378 SAMN23613562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-2SFSUZV2H/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811379 SAMN23611808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-2T52VZN4M/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811380 SAMN23613282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-2TGH447YX/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811381 SAMN23612404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2TMVZA7VA/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811382 SAMN23612840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-2TZW26AC6/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811383 SAMN23611506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-2U7FGP5E5/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811384 SAMN23613008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-2UM93DDQN/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811385 SAMN23612542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-2UHMV6H6M/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811386 SAMN23613281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-2UH2GK4YR/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811387 SAMN23611844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-2UU2DBDCD/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811388 SAMN23613206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2VX95XWV5/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811389 SAMN23612403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2XKVCCUN6/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811390 SAMN23611807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-2XN5UDWDW/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811391 SAMN23612839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-2WYWPB439/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811392 SAMN23611505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-2YC6E283V/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811393 SAMN23613205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2YT787NUQ/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.54 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811394 SAMN23611504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-2YP27S6YQ/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811395 SAMN23611510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-32B5QWJF2/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811396 SAMN23612402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2ZZXUNMT8/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811397 SAMN23613007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-2ZMN9PMGZ/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811398 SAMN23611806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-33CEE89ME/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811399 SAMN23612838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-34ET3EHYE/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811400 SAMN23612401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-34FQ84K6B/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811401 SAMN23611805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-34XW6YD83/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.75 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811402 SAMN23612400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-355Q9PQDB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811403 SAMN23612399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-35BCDQ5A5/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811404 SAMN23613006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-367JJFDKR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811405 SAMN23612837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-36RUHAZRF/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811406 SAMN23613280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-36Y37B2NA/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811407 SAMN23611456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-E3GER95XB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811408 SAMN23612203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-E5NTQDDUM/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811409 SAMN23612505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-E3YUSD7AD/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811410 SAMN23612202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-E7AEKKNF8/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811411 SAMN23613256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-E6ZHJZUCK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811412 SAMN23611694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-E7TKWYW4K/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811413 SAMN23612730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-E8BEMFC9N/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811414 SAMN23611695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-E7MGVHXAS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811415 SAMN23612200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-E8H97HK8F/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811416 SAMN23612201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-E8C2Y66QS/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811417 SAMN23612729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-E8Q4PMVES/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811418 SAMN23613219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-E8V98FGY6/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811419 SAMN23612199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-E9XSTUBTF/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811420 SAMN23612198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-E9ZBUSA2V/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811421 SAMN23612197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-EBC3YEE6V/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811422 SAMN23613360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-EBNB7YFH3/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811423 SAMN23613126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EBSWCN8AE/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811424 SAMN23612968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-EC6GMNXYW/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811425 SAMN23612967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ECCVVKSYB/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811426 SAMN23612728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-EDFSFVGST/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811427 SAMN23612196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ECECVC6YD/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811428 SAMN23613125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EDPGHJC8D/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811429 SAMN23612195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-EDWN9PVP8/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811430 SAMN23612504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-EFPEJZ5WP/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811431 SAMN23612884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-EF8AB64GJ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811432 SAMN23612883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-EFVRC4S4N/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811433 SAMN23612194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-EHJKGSTWP/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811434 SAMN23612727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-EJ5MNXW63/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811435 SAMN23613255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-EJ4B5B86N/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.98.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811436 SAMN23613209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-EJ3KVFXUF/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811437 SAMN23612503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-EJF7QPQJ3/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811438 SAMN23612193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-EKQ4PJSYX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.110 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811439 SAMN23611587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-S8JZRCUCE/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811440 SAMN23611586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-S8V4QWA9R/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811441 SAMN23613064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-S92DDNVRF/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811442 SAMN23612013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-S9JS938MF/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811443 SAMN23613063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SA4K2W7FU/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811444 SAMN23612632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-S9WWU2RZ8/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811445 SAMN23613062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SAB3FVU8H/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811446 SAMN23612631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-SAMB8Z9AT/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811447 SAMN23612012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SBJPY9Z9S/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811448 SAMN23613061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SBC5UG4P5/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811449 SAMN23613240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-SCUTKGNUH/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811450 SAMN23612010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SDW23HDHS/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811451 SAMN23612011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SD9GPMT5X/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811452 SAMN23612009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SEBF6A9SF/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811453 SAMN23612008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SEM35T8TN/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811454 SAMN23612630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-SFYUKJR6S/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811455 SAMN23612629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-SG2RHYH43/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811456 SAMN23612007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SGXNY39KB/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811457 SAMN23611585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-SHEQ5Z5WB/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811458 SAMN23611420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-SJBD64XC2/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811459 SAMN23612006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SHUKHCDRZ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811460 SAMN23612460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-SJX4GP75G/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811461 SAMN23611584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-SK3JNGE2R/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811462 SAMN23613239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-SKVVJZB5Z/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811463 SAMN23612005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SN37PE3DX/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811464 SAMN23612932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-SQEDPJ2UU/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811465 SAMN23613060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SNTSGYJ59/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811466 SAMN23613238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-SQNJHEEBX/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811467 SAMN23611419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-SR6SFX25P/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811468 SAMN23612003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SRUB6PYDN/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811469 SAMN23612004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SRSK534ZM/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811470 SAMN23612002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SS2GQ329V/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811471 SAMN23612392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3MWPZ6XSH/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811472 SAMN23612908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-3PJXMA7XY/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811473 SAMN23613204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3PTCRZUGV/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811474 SAMN23612391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3QKB4DZR2/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811475 SAMN23612390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3RH8WHVZM/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811476 SAMN23611796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-3UR8C48YC/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811477 SAMN23611877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-3UUJEMKV7/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811478 SAMN23612831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-3THWAJ9JQ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811479 SAMN23613203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3V6ZKK4X5/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811480 SAMN23612389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3VEJ4F8Q4/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811481 SAMN23612388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3WN4A28GA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811482 SAMN23612387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3XG8G5FRK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811483 SAMN23613279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-3YMMZN5PN/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811484 SAMN23613003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-3YNHHZCHC/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811485 SAMN23613202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3XUB8KZ8A/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811486 SAMN23612386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3YPSFNZBV/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811487 SAMN23612907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-3YWAKU2MF/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811488 SAMN23611795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-3Z2PQV5ER/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811489 SAMN23612385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3YRMVRKHV/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811490 SAMN23613278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-422Q8QVAW/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811491 SAMN23611794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-424GUKTCU/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.75 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811492 SAMN23612384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3ZDVZW4RN/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811493 SAMN23612383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-42NA2KNYY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811494 SAMN23612830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-437V5NVCD/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811495 SAMN23612906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-43SDX2SQ4/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811496 SAMN23611499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-44FGSCEK5/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811497 SAMN23613201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-452PW23EX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811498 SAMN23613559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-45F7NA2AC/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811499 SAMN23613200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-45FMD5T7G/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811500 SAMN23612382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4626F95ZS/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811501 SAMN23612380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-47NADRX4F/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811502 SAMN23611793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-47Z4YZRUD/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811503 SAMN23611804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-37QFSM5M4/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811504 SAMN23613561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-37XVF8V7R/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811505 SAMN23613004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-385T3W2AD/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811506 SAMN23611803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-392FEREAX/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811507 SAMN23613005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-385JYDFWS/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811508 SAMN23612836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-39VHRPYKM/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811509 SAMN23612398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3AW7FKM5H/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811510 SAMN23612835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-3AZWAUTYM/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811511 SAMN23612834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-3B9BNS5MW/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811512 SAMN23612541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-3BG5FJGGZ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.86 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811513 SAMN23612397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3C5HGCZSM/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811514 SAMN23612540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-3C85QF522/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811515 SAMN23612396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3CDQVT96U/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811516 SAMN23612395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3DKVKWMQC/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811517 SAMN23612394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3DN3MTZES/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811518 SAMN23613560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-3E5U7KVQR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811519 SAMN23611503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3EFK3JA2U/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811520 SAMN23611802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-3EU9GR5XE/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811521 SAMN23611502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3F68T7EDR/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811522 SAMN23611501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3FVD9N4N8/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811523 SAMN23612393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3G7D68HQ9/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811524 SAMN23612539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-3G95C9V3W/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811525 SAMN23611500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3GE2QANC9/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811526 SAMN23611801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-3HC2Q5EBE/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811527 SAMN23612833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-3HM73YNF8/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811528 SAMN23611800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-3HQFXVRT5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811529 SAMN23611799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-3HZWE9TPW/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811530 SAMN23611798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-3JA4MT3NE/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811531 SAMN23613214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CT-CDC-STM-3JPXBKRN6/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811532 SAMN23612832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-3KK493FSV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.54 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811533 SAMN23611831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-3K999P2R3/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811534 SAMN23611797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-3KKYEZX4P/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811535 SAMN23611520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PR-CDC-STM-228J93V25/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811536 SAMN23611822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-23H3UXBFC/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811537 SAMN23612847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-249PW4S86/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811538 SAMN23612417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-24CAFVY59/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811539 SAMN23612846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-24NSPBVAA/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811540 SAMN23612844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-27HAB8JJ5/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811541 SAMN23612845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-25UWK7Y8X/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811542 SAMN23613284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-24YSBMXHJ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811543 SAMN23613208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-27XU3MN7G/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811544 SAMN23612416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2B66XHMKQ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811545 SAMN23613283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-2ARES69CA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811546 SAMN23612415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2BVZJT23U/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811547 SAMN23612414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2DT4VKYB9/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811548 SAMN23612412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2FKD65BUF/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811549 SAMN23612413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2EP7DUQUF/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811550 SAMN23612843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-2GJQ5TNXJ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811551 SAMN23612411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2GMX7DK99/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811552 SAMN23612543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-2GT3EZ9UT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811553 SAMN23611835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-2HD24USHF/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811554 SAMN23612909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-2H55HX7TH/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811555 SAMN23611810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-2HZAB99UQ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811556 SAMN23612842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-2JAJ7JJ73/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811557 SAMN23611809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-2K76VHGDK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811558 SAMN23612410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2KXQK2ZA6/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811559 SAMN23611879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-2KYM57ENS/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811560 SAMN23611508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-2MCM5CQX4/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811561 SAMN23612409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2MAKM2PKR/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811562 SAMN23611878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-2MT62EA82/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811563 SAMN23611507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-2NFVANQQ3/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811564 SAMN23612408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2P265BPDV/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811565 SAMN23612407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2Q4C5U3UJ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811566 SAMN23612841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-2QC6XKDCJ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811567 SAMN23611834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-F8ESWV6VF/2021 collected_by 'Helix' collection_date 2021-11-13 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811568 SAMN23613120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-F9ACZYU43/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811569 SAMN23612501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-F97YQQJDT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811570 SAMN23613121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-F8JE5F8ZE/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.106 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811571 SAMN23611511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-F9JDRDD8V/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811572 SAMN23612963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-F9JFVHJQ2/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811573 SAMN23612186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FA5UZNDNE/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811574 SAMN23612722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FASQ2X7JC/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811575 SAMN23613119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FAUWZY2CY/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811576 SAMN23612185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FB7B27V56/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 37 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811577 SAMN23613118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FAZF86TV4/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811578 SAMN23613117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FBQ7V9947/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811579 SAMN23612184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FC54CJYSD/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811580 SAMN23612721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FCCTHWGNV/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811581 SAMN23612183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FENQ2Y74S/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811582 SAMN23611688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FD3CAWYSK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811583 SAMN23612500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-FCYYWSUYE/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811584 SAMN23611452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-FEUQYW6BX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811585 SAMN23612182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FF6ZFTUAJ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811586 SAMN23612180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FGYGCUKT8/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811587 SAMN23612181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FF94PRF5J/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811588 SAMN23613217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-FK9PC2GRS/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811589 SAMN23612179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FGZPUT8FU/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811590 SAMN23612177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FKSCTVZZ6/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811591 SAMN23611687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FKVKB3T82/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.113 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811592 SAMN23612178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FKBS88C3K/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811593 SAMN23612962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-FKY7F7TKJ/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811594 SAMN23612176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FKZJRD8XJ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811595 SAMN23612961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-FMDCH5BSW/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811596 SAMN23612175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FMKFZABHR/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811597 SAMN23612882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-FMZYA95A6/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 5 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811598 SAMN23612174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FMXAKHWB6/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811599 SAMN23612862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-T4X35UN7M/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811600 SAMN23612624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-T5E3YPK8G/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811601 SAMN23613055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-T62JC86Z6/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811602 SAMN23611581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-T7CS9JGDZ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811603 SAMN23612861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-T63QQZSRK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811604 SAMN23611992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-T8AE2CRCA/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811605 SAMN23612860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-T8TTDCP96/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811606 SAMN23611580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-T9AXYTPNV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811607 SAMN23611579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-T9HBEH4N4/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811608 SAMN23612623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-T9NVTPJF6/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811609 SAMN23613054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TA9BAEJ9X/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811610 SAMN23611991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TAVB3BRAM/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811611 SAMN23612859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-TD7XE7UK9/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811612 SAMN23611990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TAZU3F9E8/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811613 SAMN23611988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TF6KJCTBN/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811614 SAMN23611989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TE8H7QTTZ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811615 SAMN23611578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TERGQPW7D/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.100 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811616 SAMN23612622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-TF9SYXV2P/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811617 SAMN23611577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TGDJB3XKX/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811618 SAMN23611576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TGDTSJRRB/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811619 SAMN23611417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-THH5CYPWB/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811620 SAMN23611987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-THN9CGM96/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811621 SAMN23612455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-THHB6NVUV/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811622 SAMN23613313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-TJ6C646JT/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811623 SAMN23613053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TJVDRR7QY/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811624 SAMN23612910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IA-CDC-STM-TKX3SZWEP/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811625 SAMN23611823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-TMHYQBWV2/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811626 SAMN23611986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TMND3AZ6F/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811627 SAMN23613237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TNQFPHD7G/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811628 SAMN23611985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TP92WDW47/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811629 SAMN23613236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TPYERT737/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811630 SAMN23612611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UKK7JTD4S/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811631 SAMN23613312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-TQ43REK4N/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811632 SAMN23611856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-UKN3XKP4P/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811633 SAMN23611961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UKPFAR9JS/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811634 SAMN23611960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UM5GMH33N/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.110 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811635 SAMN23611855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-UMHF5WMY7/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811636 SAMN23611959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UPGJ9GUZ6/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811637 SAMN23613045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UQ5CFGAJ5/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811638 SAMN23611568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-UPDQVGYGF/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811639 SAMN23612610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UQFUQ6M6J/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811640 SAMN23611958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UQKNGZ394/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811641 SAMN23612449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-UQPYCGHP6/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811642 SAMN23611957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UQTKR564N/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811643 SAMN23612448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-URC32XZN3/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811644 SAMN23612609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UQXDS7NUV/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811645 SAMN23611956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UR2RMMTEH/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811646 SAMN23613044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-USCA9VFHY/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811647 SAMN23611413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-USPBYTSKS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811648 SAMN23612929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-UT3UQNMY2/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811649 SAMN23611412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-USXJAJ5UE/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811650 SAMN23613231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UT8PG9BED/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811651 SAMN23612421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-UU6TTMPZS/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811652 SAMN23612447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-UUEC56CCK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811653 SAMN23611955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UUJXA6YRG/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811654 SAMN23613043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UUM6SESA5/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811655 SAMN23612608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UVP3NB7DN/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811656 SAMN23612420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-UUPHHKYV2/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811657 SAMN23611411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-UWKQ9RWCH/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811658 SAMN23612606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UWR9AD39J/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811659 SAMN23612607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UWNE4NZKS/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811660 SAMN23611954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UXSZTWM6A/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811661 SAMN23611953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UYZ6VXA5G/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811662 SAMN23612590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WH3Y3GXRM/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811663 SAMN23612605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UY35US8S7/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811664 SAMN23612855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-WH745T5AB/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811665 SAMN23611552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WHHDXNBKU/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811666 SAMN23613301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WH4UNPFP7/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811667 SAMN23611551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WHUH5CG45/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811668 SAMN23612439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-WHSKEDZ8C/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811669 SAMN23611550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WJN4D53W9/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811670 SAMN23612438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-WJT7CZGC4/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811671 SAMN23611928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WJZDFVMG3/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811672 SAMN23611549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WK9EGBBEP/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811673 SAMN23613300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WKNMZMEFD/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811674 SAMN23613299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WKRYKY44Q/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811675 SAMN23613298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WM2VUCHMZ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811676 SAMN23611548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WMP4RH79S/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811677 SAMN23613212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CT-CDC-STM-WM2WXFDQD/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811678 SAMN23611927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WN3UZZQXM/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811679 SAMN23611547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WN4ZJFPZJ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811680 SAMN23613034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WPFPAWT5J/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811681 SAMN23612925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-WQ5WTTGAS/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811682 SAMN23611546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WQM8DANND/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811683 SAMN23613297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WQRE6KDKA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811684 SAMN23612589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WRW2GEVH6/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811685 SAMN23613296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WRWH7QCQH/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811686 SAMN23611545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WSVJ98EWK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811687 SAMN23612924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-WTFHQS3ZU/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811688 SAMN23611926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WTMA4AUSF/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811689 SAMN23613033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WTU2BU4PB/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811690 SAMN23612588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WU7AKWKK7/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811691 SAMN23612587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WVEUM43HR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811692 SAMN23613031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WVFEBW3FN/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811693 SAMN23613032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WUU5AGGCU/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811694 SAMN23612923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-WVHVX94HU/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811695 SAMN23612364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-54V3E6HNQ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811696 SAMN23612363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-555GPDQQR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811697 SAMN23612362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-568C5KM34/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811698 SAMN23612361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-57G6H4D73/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811699 SAMN23611781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-577QUUSN2/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811700 SAMN23613191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-57RP8WGS9/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811701 SAMN23611494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-57SPN7V8A/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811702 SAMN23611780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-57TFQEBXX/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.120.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811703 SAMN23611843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-58CKGP53Q/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811704 SAMN23611385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-596YAEN77/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811705 SAMN23611493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5A4QJQXVG/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811706 SAMN23611779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-5AFE9TKFA/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811707 SAMN23612360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5AN6XTP54/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811708 SAMN23613275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5BR44S42W/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811709 SAMN23613190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5B7FQQTUX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811710 SAMN23612359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5BFNJ7KQ6/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811711 SAMN23612358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5C32MN62X/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.5.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811712 SAMN23612822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5CJGJ9JY5/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811713 SAMN23611778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-5DGUH84H4/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811714 SAMN23612901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-5CJCR599D/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811715 SAMN23611777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-5DRF9D2WP/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811716 SAMN23613553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-5EKRTUJDM/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811717 SAMN23613189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5FGP33F8Z/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811718 SAMN23612357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5DRB9DGNS/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811719 SAMN23611492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5HCJ885PU/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811720 SAMN23613552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-5HAQHFZY8/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811721 SAMN23611776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-5HEH6U2TB/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811722 SAMN23611491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5JBGAV2Q8/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.107 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811723 SAMN23613188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5JRYYEUN5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811724 SAMN23612821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5KR786MQB/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811725 SAMN23613187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5M8E46433/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811726 SAMN23612356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5MH6G9KQR/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811727 SAMN23612567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YB7UB9SZJ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811728 SAMN23612918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-YB7Z63Q49/2021 collected_by 'Helix' collection_date 2021-11-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811729 SAMN23612566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YBK49RKG9/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811730 SAMN23612565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YBKVFYTH7/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811731 SAMN23611398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-YBM82GBY5/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811732 SAMN23611899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YDAZE7XXP/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811733 SAMN23613024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YD7FT2C5F/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811734 SAMN23613023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YEF3R25KZ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.106 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811735 SAMN23611397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-YEYKJCV57/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811736 SAMN23611898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YFMZJC8RD/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811737 SAMN23611532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-YGJ8NW4WR/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811738 SAMN23611386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-YGTPD4X2Z/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811739 SAMN23613022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YFSMDZMXS/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811740 SAMN23613021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YHENQSHPS/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811741 SAMN23613291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-YHKK3ZS8T/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811742 SAMN23611531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-YJEBMT5M3/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811743 SAMN23612564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YJTENRWBR/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811744 SAMN23613020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YJTKP8S9Y/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811745 SAMN23613290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-YJV8RMXYW/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811746 SAMN23612917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-YK2RN9AXE/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811747 SAMN23613019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YK6DT3Z9C/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811748 SAMN23611897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YKA3ZG6YZ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811749 SAMN23611530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-YMF3UHYPS/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811750 SAMN23613018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YKN3KADPC/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.54 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811751 SAMN23612850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-YKGWA4KSB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811752 SAMN23611396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-YMJC559DX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811753 SAMN23613017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YN62PY69V/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 36 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811754 SAMN23612430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-YMVZPFBRJ/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811755 SAMN23613016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YNMAKXYQ9/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811756 SAMN23611395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-YNV32RAAM/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811757 SAMN23612429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-YNWNHT3BB/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811758 SAMN23613289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-YP6HNC97E/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811759 SAMN23612325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6YEXSXQ2K/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811760 SAMN23612802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-6YJKQNQAC/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811761 SAMN23611770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-6YKVMH2D6/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811762 SAMN23612993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6YQF22H8C/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811763 SAMN23612324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6Z6ZFRG7X/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811764 SAMN23612323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6ZDP9DUEB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811765 SAMN23612801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-6ZEM8ZZ5Q/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811766 SAMN23613544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-7264ETRM8/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811767 SAMN23612800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-726BKV4FD/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811768 SAMN23612322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6ZF4SJMGZ/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811769 SAMN23612899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-72D77UP83/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811770 SAMN23612321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-72DWX5TBY/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811771 SAMN23613177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-72EKHD89V/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811772 SAMN23612530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-7335P6S7J/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811773 SAMN23612798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-72NZHPMKE/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811774 SAMN23612799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-72H9THND8/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811775 SAMN23613176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-73D7SK9AU/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.125 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811776 SAMN23613175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-74996T7CX/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811777 SAMN23611769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-74GAUKCXT/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811778 SAMN23612529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-74NVA6TW4/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.117 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811779 SAMN23613174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-74HNBZKBC/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.125 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811780 SAMN23612320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-74N922HPJ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811781 SAMN23612425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-74TR6YGF2/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811782 SAMN23612319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-75WSDJJQA/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811783 SAMN23611876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-77XNU67HY/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811784 SAMN23612318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-76TRYW73D/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811785 SAMN23612317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-78PKWGZYQ/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811786 SAMN23612316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-79BNJM9AR/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811787 SAMN23611768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-79BPJDGNT/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811788 SAMN23611767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-79C47QXPG/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811789 SAMN23612992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-7AF4CUZBU/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811790 SAMN23612528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-7B8DDD8VB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811791 SAMN23613102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HHY9E34KV/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811792 SAMN23612141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HJPUK2CBB/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811793 SAMN23611662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HJNYYH87H/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811794 SAMN23611661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HKBCBMSRX/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811795 SAMN23612704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HKNNNCRM7/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811796 SAMN23612880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-HKG653JXX/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811797 SAMN23611660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HM6J2UC5N/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811798 SAMN23612954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-HMG5XXGXA/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811799 SAMN23613349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-HMMRRK99N/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811800 SAMN23611659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HN7NS6P8D/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811801 SAMN23612491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-HNSG2C8TH/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811802 SAMN23612140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HQC9NQRND/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811803 SAMN23611441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-HQ8E8BXK2/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811804 SAMN23612139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HQKR2JC92/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.118 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811805 SAMN23612703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HS4STU7P9/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811806 SAMN23613348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-HS3QAEJTW/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.116.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811807 SAMN23612879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-HSFD5TPAP/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811808 SAMN23611389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-HT8VSSAX7/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811809 SAMN23612702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HVBYKS5RW/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811810 SAMN23612137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HVX66MU9W/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811811 SAMN23612138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HVFGJWAEJ/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811812 SAMN23612953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-HVZP7PHAM/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811813 SAMN23613347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-HW354GTUH/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811814 SAMN23612878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-HWND78MQB/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811815 SAMN23613101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HWCGMB9DA/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811816 SAMN23612136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HWYK95YY4/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811817 SAMN23612135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HX5XCY5U4/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811818 SAMN23612134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HXQUNTP2Y/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811819 SAMN23611658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HXATFJYTG/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811820 SAMN23613346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-HXVZJQYH3/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811821 SAMN23611657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-J2GC5XXV3/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811822 SAMN23612133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-J2J2XCRRZ/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811823 SAMN23612481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-KG2K7Q9GK/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811824 SAMN23612480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-KJ46HNC23/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811825 SAMN23612118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KJ7FQQ846/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811826 SAMN23612688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-KJJW3NPRK/2021 collected_by 'Helix' collection_date 2021-11-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811827 SAMN23612479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-KKQYEFUPP/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811828 SAMN23612117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KMKJ49FVY/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811829 SAMN23612874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-KMQFNYZVD/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811830 SAMN23612478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-KKRXNQ6XJ/2021 collected_by 'Helix' collection_date 2021-11-19 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811831 SAMN23612687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-KMTY9CSEV/2021 collected_by 'Helix' collection_date 2021-11-15 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811832 SAMN23613246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-KMXYHPCS7/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811833 SAMN23612945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-KP9C6BG9Q/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811834 SAMN23612686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-KPSNM7P49/2021 collected_by 'Helix' collection_date 2021-11-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811835 SAMN23612116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KQ5G63N52/2021 collected_by 'Helix' collection_date 2021-11-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.110 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811836 SAMN23613092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KPEB2HY8M/2021 collected_by 'Helix' collection_date 2021-11-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811837 SAMN23612115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KQ6WC6HN5/2021 collected_by 'Helix' collection_date 2021-11-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12811838 SAMN23612422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-KQER9MR42/2021 collected_by 'Helix' collection_date 2021-11-21 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.119 BioSampleModel SARS-CoV-2: clinical or host-associated