SRS12815403 SAMN23216080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726965/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2406692504883 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4947109222412 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1107597351074 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815402 SAMN23217246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726964/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0796413421631 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2208118438721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8545112609863 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815401 SAMN23215417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726963/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7696342468262 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5451831817627 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4319534301758 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815400 SAMN23216081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726962/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6610984802246 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6221523284912 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5338649749756 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815399 SAMN23215418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726961/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6785717010498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5271644592285 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2855663299561 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815398 SAMN23216082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726960/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2477340698242 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6915245056152 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3321399688721 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815386 SAMN23214711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726948/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5446109771729 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8171577453613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4336490631104 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815387 SAMN23214561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000726949/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1454925537109 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.014404296875 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9605445861816 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815388 SAMN23217728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726950/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2111358642578 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8491687774658 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6226234436035 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815389 SAMN23215421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726951/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4844589233398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8358688354492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3537330627441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815390 SAMN23215420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726952/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2143096923828 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5820846557617 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1995983123779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815391 SAMN23216085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726953/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.2824935913086 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.9842901229858 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.7673969268799 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815392 SAMN23216084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726954/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0739421844482 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.594352722168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8264179229736 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815393 SAMN23215419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726955/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4008102416992 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4836616516113 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2566184997559 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815394 SAMN23214113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000726956/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6388149261475 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3854427337646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2079086303711 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815395 SAMN23216083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726957/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8341655731201 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1353912353516 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1767463684082 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815396 SAMN23217248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726958/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7752647399902 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.5821990966797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.3950424194336 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815397 SAMN23217247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726959/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2351341247559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9638843536377 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3468952178955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815379 SAMN23214806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728945/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2483043670654 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4256019592285 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1635189056396 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815380 SAMN23215658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000728946/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7673053741455 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9070587158203 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7560615539551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815381 SAMN23215248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728947/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8397121429443 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6157131195068 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1032886505127 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815382 SAMN23215657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000728948/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8542385101318 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5582370758057 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8041210174561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815383 SAMN23214301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726945/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5014152526855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.986328125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7332210540771 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815384 SAMN23215422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726946/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3929424285889 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4633102416992 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4835834503174 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815385 SAMN23214712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726947/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1575202941895 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7758350372314 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7562236785889 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815404 SAMN23214442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000726966/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6214427947998 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8971710205078 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7939643859863 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815405 SAMN23215416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726967/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0427722930908 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3028450012207 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9327640533447 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815406 SAMN23217245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726968/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6404628753662 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6238231658936 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3167839050293 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815407 SAMN23217244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726969/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0707740783691 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8121662139893 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7489643096924 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815408 SAMN23214962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000726970/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4044017791748 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3738212585449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1544876098633 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815409 SAMN23214521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000726971/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.504358291626 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8205280303955 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6831665039062 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815410 SAMN23217243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726972/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7657222747803 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4046115875244 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2640113830566 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815411 SAMN23217242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726973/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8170280456543 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4546241760254 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3491916656494 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815412 SAMN23215414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726975/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8995580673218 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8314590454102 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6226539611816 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815413 SAMN23215415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726974/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4902973175049 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2026348114014 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.67555809021 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815414 SAMN23214300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726976/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7513980865479 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6295032501221 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4749774932861 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815415 SAMN23215863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730170/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.276948928833 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1953239440918 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7957077026367 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815416 SAMN23215698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GU-CDC-STM-000730171/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Guam host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6264762878418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8295726776123 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7783031463623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815417 SAMN23214407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000730172/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7061729431152 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8746032714844 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.650203704834 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815418 SAMN23217681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730173/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1022872924805 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2100658416748 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9190330505371 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815419 SAMN23217680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730174/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.6183519363403 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6321697235107 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1313247680664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815420 SAMN23217585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730175/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3728733062744 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4335994720459 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.196849822998 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815421 SAMN23217584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730176/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7201566696167 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7919502258301 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6953754425049 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815422 SAMN23215697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GU-CDC-STM-000730177/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Guam host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7869567871094 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4651432037354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3690605163574 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815423 SAMN23216425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730178/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6525344848633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9037704467773 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6847457885742 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815424 SAMN23215106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730179/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8742733001709 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4300060272217 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7427959442139 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815425 SAMN23215105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730180/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.9877119064331 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.7788419723511 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.4677505493164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815426 SAMN23215104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730181/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2752494812012 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1025009155273 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7940559387207 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815427 SAMN23215103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730182/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7149181365967 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9215068817139 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6735134124756 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815428 SAMN23215102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730183/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1473770141602 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1653957366943 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1775360107422 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815429 SAMN23213846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730185/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5007858276367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5886821746826 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0290832519531 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815430 SAMN23215862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730184/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9709491729736 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4728698730469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1787605285645 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815431 SAMN23215101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730186/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0099258422852 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0918159484863 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8238334655762 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815432 SAMN23215861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730187/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6881561279297 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7480716705322 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4062671661377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815433 SAMN23215100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730188/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.429931640625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5497055053711 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1492519378662 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815434 SAMN23216424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730189/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1577930450439 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1204471588135 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5937309265137 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815435 SAMN23215099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730191/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2980041503906 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6893177032471 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1013469696045 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815436 SAMN23216423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730190/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6920394897461 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1388626098633 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7165813446045 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815437 SAMN23215098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730192/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9561443328857 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1989402770996 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9612865447998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815438 SAMN23216422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730193/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8397769927979 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0040645599365 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5192012786865 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815439 SAMN23216421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730194/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.572359085083 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5582027435303 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.264575958252 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815440 SAMN23214195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730195/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9515628814697 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0824928283691 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9212245941162 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815441 SAMN23216420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730202/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9750480651855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8914260864258 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4993267059326 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815442 SAMN23215097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730203/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8371067047119 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7144813537598 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4087696075439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815443 SAMN23214194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730204/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3050441741943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6354904174805 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5336208343506 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815444 SAMN23215096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730205/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8982982635498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7987995147705 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5813941955566 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815445 SAMN23215860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730206/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7572689056396 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5445461273193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0524520874023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815446 SAMN23215859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730207/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0808238983154 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0527896881104 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5955715179443 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815447 SAMN23215567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725110/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6451148986816 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7252140045166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6075305938721 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815448 SAMN23217460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725111/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.7547521591187 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.0634107589722 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.9973983764648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815449 SAMN23214840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000725112/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6517763137817 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.582555770874 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1514549255371 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815450 SAMN23217459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725113/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2947006225586 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5594425201416 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1894302368164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815451 SAMN23216169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725114/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8214340209961 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8142223358154 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1482353210449 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815453 SAMN23214941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000725116/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.3539514541626 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.0061521530151 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.7708177566528 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815454 SAMN23217458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725117/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6267375946045 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.5468673706055 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2772350311279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815455 SAMN23217457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725120/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.844856262207 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8573722839355 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7755851745605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815456 SAMN23215566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725118/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7537040710449 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7747230529785 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7487812042236 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815457 SAMN23214081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725121/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1748847961426 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.036413192749 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.725025177002 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815458 SAMN23217555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-000725123/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2586288452148 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3884601593018 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0694389343262 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815459 SAMN23217753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000725122/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.742244720459 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7653913497925 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7086877822876 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815460 SAMN23217456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725124/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6003932952881 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8152465820312 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7761497497559 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815461 SAMN23214527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MO-CDC-STM-000725125/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5909175872803 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8255577087402 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.611572265625 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815462 SAMN23214940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000725126/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6256408691406 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8127861022949 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6462306976318 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815463 SAMN23217455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725127/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5596466064453 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4249706268311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7822895050049 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815464 SAMN23217752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000725128/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.509105682373 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0237693786621 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7556934356689 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815465 SAMN23217751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000725129/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.514178276062 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2572422027588 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7360038757324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815466 SAMN23214080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725132/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3507423400879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0353126525879 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.806547164917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815467 SAMN23216167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725133/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5229597091675 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1547565460205 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1764793395996 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815468 SAMN23214079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725134/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7526435852051 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6356773376465 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5881195068359 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815469 SAMN23215565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725135/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5921878814697 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8511199951172 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7476406097412 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815452 SAMN23216168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725115/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2110252380371 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2725772857666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.906587600708 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815470 SAMN23215564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725136/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1448841094971 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.214147567749 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1123943328857 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815471 SAMN23215563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725137/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2198619842529 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4947948455811 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3091602325439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815472 SAMN23215562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725138/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.807993888855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8295154571533 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5074758529663 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815473 SAMN23216166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725140/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1911430358887 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7721271514893 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1806545257568 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815474 SAMN23214494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000725139/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7622480392456 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0310363769531 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6214962005615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815475 SAMN23214493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000725141/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0018796920776 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8820676803589 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.777759552002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815476 SAMN23217652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000725142/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0441799163818 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0075454711914 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3840293884277 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815477 SAMN23217454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725143/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3439989089966 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8208103179932 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5124702453613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815478 SAMN23214458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000725144/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7754707336426 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7591171264648 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6726894378662 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815479 SAMN23214243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728982/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9859867095947 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7443103790283 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7226581573486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815480 SAMN23216670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728983/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4682922363281 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2104892730713 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9814567565918 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815481 SAMN23216669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728984/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.927038192749 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0968112945557 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8086490631104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815482 SAMN23214804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728985/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9584407806396 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.727710723877 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.6916961669922 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815483 SAMN23217696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728986/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0179309844971 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7994632720947 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4456768035889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815484 SAMN23216668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728987/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6207256317139 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6889762878418 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5451717376709 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815485 SAMN23217603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728988/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0487747192383 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8927392959595 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5627088546753 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815486 SAMN23213769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000728990/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6599731445312 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5583305358887 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4404258728027 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815487 SAMN23216667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728989/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3428249359131 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4159145355225 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7605667114258 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815488 SAMN23215958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728991/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8140964508057 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8814811706543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4306869506836 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815489 SAMN23215235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728992/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7354488372803 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2680168151855 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7147464752197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815490 SAMN23214242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728993/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9348335266113 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2232246398926 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2715930938721 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815491 SAMN23216666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728994/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4048404693604 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5056819915771 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.097339630127 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815492 SAMN23214241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729002/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.239429473877 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0269088745117 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0129947662354 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815493 SAMN23215234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728995/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4918937683105 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0614280700684 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.720911026001 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815494 SAMN23214663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729003/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3212051391602 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8299713134766 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6417064666748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815495 SAMN23214662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729005/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7239093780518 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7687244415283 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6941757202148 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815496 SAMN23216665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729004/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8310203552246 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7218723297119 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4664840698242 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815497 SAMN23215233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729006/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9337615966797 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0760955810547 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8294105529785 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815498 SAMN23214661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729007/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6012878417969 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5324802398682 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.288646697998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815499 SAMN23215957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729009/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5876064300537 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4167156219482 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0939846038818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815500 SAMN23215232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729008/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3622264862061 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.712682723999 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4394702911377 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815501 SAMN23215231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729010/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4930973052979 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9494857788086 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6484680175781 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815502 SAMN23214803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729011/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0111522674561 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1690082550049 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4123229980469 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815503 SAMN23214957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000729012/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6913051605225 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2630462646484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1190605163574 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815504 SAMN23214660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729013/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8875122070312 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7971534729004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8240089416504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815505 SAMN23214481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000729014/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2370738983154 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1536331176758 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9225063323975 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815506 SAMN23215230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729015/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.901065826416 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9790706634521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7342014312744 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815507 SAMN23215229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729016/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3294315338135 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2902336120605 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7447032928467 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815508 SAMN23215228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729017/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7803592681885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.34690284729 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5702285766602 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815509 SAMN23214239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729019/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8393001556396 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7990913391113 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3030109405518 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815510 SAMN23214240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729018/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1097660064697 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2173480987549 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7638931274414 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815511 SAMN23213839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730310/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9419021606445 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2688102722168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8309345245361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815512 SAMN23215077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730311/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9449653625488 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8779907226562 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8079452514648 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815513 SAMN23215075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730313/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2095928192139 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4036178588867 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0639324188232 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815514 SAMN23215076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730312/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3495483398438 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7539749145508 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8396415710449 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815515 SAMN23214607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730314/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6382541656494 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6655139923096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6115455627441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815516 SAMN23214405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000730315/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4669551849365 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0526733398438 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8957710266113 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815517 SAMN23215074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730316/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2245998382568 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4726409912109 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0570735931396 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815518 SAMN23215644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000730317/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7597389221191 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.779748916626 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.6099052429199 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815519 SAMN23215849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730318/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0099563598633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1854057312012 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8237361907959 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815520 SAMN23214606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730319/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3369255065918 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1813182830811 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8201427459717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815521 SAMN23214185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730320/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4593563079834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5455226898193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2392101287842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815522 SAMN23214538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730321/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7372646331787 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6112480163574 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2239875793457 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815523 SAMN23216387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730322/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6491050720215 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6128520965576 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1705074310303 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815524 SAMN23216385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730324/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0135269165039 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9649524688721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7982521057129 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815525 SAMN23216386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730323/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8362312316895 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3977317810059 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0317363739014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815526 SAMN23215848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730325/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2627658843994 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0358142852783 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8260974884033 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815527 SAMN23213837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730327/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5767555236816 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2708415985107 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2584362030029 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815528 SAMN23213838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730326/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3164558410645 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6311321258545 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3942413330078 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815529 SAMN23215073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730328/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4215888977051 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4175987243652 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9108180999756 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815530 SAMN23215071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730330/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.007152557373 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0036239624023 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7314891815186 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815531 SAMN23215072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730329/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5590896606445 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6650676727295 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0942344665527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815532 SAMN23216384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730331/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0024509429932 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2496185302734 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8569622039795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815533 SAMN23216383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730332/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6657867431641 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.753454208374 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5378170013428 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815534 SAMN23215070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730333/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4038906097412 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3562202453613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7911701202393 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815535 SAMN23213836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730334/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1775302886963 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2196598052979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.827091217041 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815536 SAMN23213835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730335/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1769008636475 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9599838256836 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8626461029053 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815537 SAMN23215069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730336/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8317089080811 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0829582214355 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.881519317627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815538 SAMN23214604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730338/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5793151855469 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7639999389648 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4651908874512 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815539 SAMN23214605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730337/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5775833129883 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8685417175293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6792106628418 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815540 SAMN23215068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730339/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.759651184082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9128284454346 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5677013397217 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815541 SAMN23217676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730340/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4256134033203 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7907772064209 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7000102996826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815542 SAMN23215067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730341/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7047109603882 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.604513168335 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2859191894531 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815543 SAMN23217215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727080/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8052921295166 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.9863376617432 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.458667755127 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815544 SAMN23217214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727081/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0477313995361 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2585620880127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.817346572876 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815545 SAMN23216070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727082/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2790794372559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2927055358887 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8590087890625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815546 SAMN23217213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727083/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4059429168701 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6588172912598 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7371711730957 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815548 SAMN23216069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727085/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1921710968018 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0360069274902 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8076057434082 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815549 SAMN23216068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727086/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2201023101807 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8250560760498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2325229644775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815550 SAMN23215392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727088/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8709259033203 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.670033454895 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.5486459732056 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815551 SAMN23216067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727089/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5606117248535 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8215713500977 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6561508178711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815552 SAMN23216066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727092/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1333789825439 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2765045166016 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.309383392334 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815553 SAMN23214291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727091/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3274192810059 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8428840637207 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4969997406006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815554 SAMN23215391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727093/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5584144592285 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1180038452148 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.975378036499 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815555 SAMN23217212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727094/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.83740234375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4210968017578 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1051006317139 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815556 SAMN23217211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727095/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.51198387146 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.491325378418 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3712177276611 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815557 SAMN23217623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000727503/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1732902526855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2675247192383 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9263496398926 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815558 SAMN23214002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727502/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9102449417114 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2009696960449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7654247283936 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815559 SAMN23217210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727504/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3070831298828 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3807411193848 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0865497589111 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815560 SAMN23217209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727506/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9707517623901 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7608442306519 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.6888113021851 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815561 SAMN23215390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727505/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8126392364502 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3642807006836 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4819965362549 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815562 SAMN23216065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727507/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3458194732666 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3200416564941 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1323204040527 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815563 SAMN23217208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727509/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1786937713623 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2770977020264 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1841640472412 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815564 SAMN23217622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000727508/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4408893585205 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0915145874023 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7265625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815565 SAMN23214001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727511/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7524318695068 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6654872894287 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7444152832031 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815547 SAMN23215393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727084/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.28440284729 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4772872924805 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3882160186768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815566 SAMN23217207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727510/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8198204040527 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7432556152344 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0490264892578 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815567 SAMN23214419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000727512/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0401210784912 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8057765960693 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.532642364502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815568 SAMN23217206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727513/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4608039855957 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7737998962402 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4852180480957 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815569 SAMN23214290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727516/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7362823486328 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6053791046143 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3117923736572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815570 SAMN23216064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727514/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7526931762695 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.691873550415 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5813655853271 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815571 SAMN23214705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727515/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7684421539307 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.548282623291 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.9546985626221 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815572 SAMN23215389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727517/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.9397497177124 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.9366674423218 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.8191518783569 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815573 SAMN23215388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727519/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6185760498047 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.550443649292 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0532341003418 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815574 SAMN23217205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727518/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3506107330322 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9888458251953 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8166446685791 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815575 SAMN23213912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729122/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4476413726807 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.488805770874 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3769912719727 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815576 SAMN23216627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729123/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1392765045166 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.230188369751 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0096473693848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815577 SAMN23216626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729124/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2746620178223 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8869857788086 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7908725738525 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815578 SAMN23216625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729126/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.4749717712402 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7452669143677 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.2643365859985 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815579 SAMN23215945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729125/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8502426147461 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8262634277344 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.650520324707 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815580 SAMN23216624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729127/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8924751281738 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8430824279785 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8133125305176 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815581 SAMN23215944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729128/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2561626434326 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.799711227417 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3915786743164 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815582 SAMN23216622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729130/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7896614074707 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.77978515625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6734752655029 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815583 SAMN23216623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729129/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9126377105713 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0220108032227 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5982551574707 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815584 SAMN23216621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729131/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7607727050781 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.792049407959 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5041656494141 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815585 SAMN23216620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729132/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6107044219971 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8130550384521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2511920928955 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815586 SAMN23213911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729134/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8095970153809 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0256080627441 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7793483734131 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815587 SAMN23216618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729135/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0177707672119 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.748363494873 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5483474731445 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815588 SAMN23216619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729133/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8060684204102 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9146575927734 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8226928710938 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815589 SAMN23215943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729136/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1635360717773 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3166217803955 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8341484069824 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815590 SAMN23216617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729137/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.809684753418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1324806213379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7244091033936 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815591 SAMN23215942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729138/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9887847900391 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3671855926514 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8525371551514 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815592 SAMN23216616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729139/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7826824188232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0312957763672 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.884449005127 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815593 SAMN23213910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729140/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7007179260254 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6399631500244 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2555332183838 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815594 SAMN23213909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729141/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8314113616943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.841344833374 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8582592010498 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815595 SAMN23216615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729142/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6737079620361 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6509952545166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3068084716797 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815596 SAMN23216613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729145/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2394542694092 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3941307067871 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9783039093018 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815597 SAMN23216614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729144/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.710428237915 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8284435272217 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7494468688965 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815598 SAMN23216612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729146/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7549228668213 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6906356811523 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3837928771973 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815599 SAMN23216611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729147/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8134918212891 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9994049072266 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7304534912109 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815600 SAMN23216610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729148/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8384380340576 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7661972045898 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2904205322266 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815601 SAMN23216609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729149/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0137977600098 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8551578521729 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7394027709961 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815602 SAMN23216608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729150/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9746971130371 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7483024597168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5810031890869 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815603 SAMN23215941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729152/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1113967895508 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.237735748291 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.048755645752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815604 SAMN23216607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729151/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8543434143066 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8304691314697 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7383556365967 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815605 SAMN23215939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729154/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7132625579834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6040267944336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4395694732666 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815606 SAMN23215381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727590/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7135639190674 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7825469970703 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6930561065674 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815607 SAMN23215940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729153/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1517314910889 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4760189056396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2807197570801 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815608 SAMN23216052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727591/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5649280548096 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.456901550293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3848285675049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815609 SAMN23216051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727594/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1782054901123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0451354980469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7903289794922 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815610 SAMN23215380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727592/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7629432678223 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8371620178223 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6241626739502 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815611 SAMN23217187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727602/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6232643127441 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4220123291016 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2432804107666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815612 SAMN23214418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000727603/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.8405475616455 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.18248462677 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.7863998413086 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815613 SAMN23214285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727604/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6602115631104 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8495903015137 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7977542877197 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815614 SAMN23214134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000727605/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9022159576416 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8886890411377 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9575748443604 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815615 SAMN23213992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727606/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5764484405518 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4896869659424 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7064666748047 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815616 SAMN23217186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727607/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8504543304443 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2017211914062 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8633670806885 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815617 SAMN23216050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727608/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1307964324951 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3032894134521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2016582489014 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815618 SAMN23215379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727609/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4104766845703 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4354381561279 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1460666656494 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815619 SAMN23215378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727610/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1020526885986 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0047473907471 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5939426422119 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815620 SAMN23214700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727611/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0927772521973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.91037940979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6983470916748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815621 SAMN23216049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727612/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1317272186279 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0849647521973 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8329067230225 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815622 SAMN23217724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727613/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1987400054932 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1124591827393 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0061283111572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815623 SAMN23216048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727614/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6118755340576 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7516059875488 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4474620819092 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815624 SAMN23216047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727615/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7062549591064 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8188056945801 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5194339752197 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815625 SAMN23215377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727616/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0947017669678 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4374046325684 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2380313873291 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815626 SAMN23214698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727618/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7026195526123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1596374511719 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8358039855957 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815627 SAMN23214699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727617/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0024375915527 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1184310913086 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.8104972839355 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815628 SAMN23216046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727619/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6890068054199 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0400276184082 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8266201019287 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815629 SAMN23216045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727620/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4483623504639 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8099927902222 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7608671188354 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815630 SAMN23214822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000727621/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.465030670166 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7547016143799 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4845447540283 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815631 SAMN23214284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727622/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7509613037109 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7749938964844 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.714527130127 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815632 SAMN23215376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727623/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9138984680176 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.904691696167 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8188610076904 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815633 SAMN23216044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727624/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2821006774902 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1548843383789 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8539810180664 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815634 SAMN23214283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727625/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7937259674072 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9945945739746 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7863521575928 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815635 SAMN23214282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727627/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 29 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8882141113281 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0743350982666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6795406341553 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815636 SAMN23214697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727626/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9177684783936 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7986717224121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5348510742188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815637 SAMN23214696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727628/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0564002990723 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0291194915771 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1485443115234 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815638 SAMN23214651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729226/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.125301361084 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7101421356201 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9921646118164 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815639 SAMN23217621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000727629/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1623134613037 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.397123336792 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2677612304688 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815640 SAMN23215208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729227/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.1548862457275 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.3990097045898 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.0553216934204 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815641 SAMN23215207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729229/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0245571136475 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9992561340332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7506160736084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815642 SAMN23214800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729228/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8342838287354 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8768577575684 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4792575836182 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815643 SAMN23214230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729230/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7442035675049 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6397724151611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2685146331787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815644 SAMN23216582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729231/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7976093292236 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8236465454102 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7434310913086 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815645 SAMN23215206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729232/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2379531860352 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0947933197021 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7435817718506 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815646 SAMN23216581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729233/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6439266204834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7096843719482 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5258026123047 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815647 SAMN23215205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729234/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8174114227295 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6503677368164 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0652751922607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815648 SAMN23215652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000729236/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4001865386963 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5807647705078 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3571224212646 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815649 SAMN23216580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729235/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8154954910278 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2001934051514 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6955528259277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815650 SAMN23214650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729237/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.8267030715942 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4789543151855 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7937068939209 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815651 SAMN23215204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729238/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8044281005859 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0463924407959 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8210563659668 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815652 SAMN23214649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729239/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.000358581543 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1623382568359 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8399925231934 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815653 SAMN23214648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729240/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2519626617432 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5449981689453 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2036609649658 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815654 SAMN23215203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729242/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.737663269043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0982303619385 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7378616333008 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815655 SAMN23216579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729241/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.220588684082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0610580444336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6086978912354 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815656 SAMN23214799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729243/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7533016204834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2222023010254 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7263164520264 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815657 SAMN23215202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729244/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1145877838135 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7531795501709 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6397762298584 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815658 SAMN23215200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729246/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.150074005127 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.859676361084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7928848266602 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815659 SAMN23215201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729245/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7979679107666 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.633020401001 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5847320556641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815660 SAMN23214798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729247/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3967533111572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6272659301758 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1692771911621 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815661 SAMN23215199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729248/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9359092712402 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9109153747559 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7395992279053 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815662 SAMN23215198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729249/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8135223388672 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3450965881348 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0196647644043 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815663 SAMN23213903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729250/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6600513458252 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9460620880127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6927433013916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815664 SAMN23215197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729251/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1710796356201 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7551822662354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0417022705078 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815665 SAMN23215196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729252/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6647834777832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8163146972656 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3115921020508 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815666 SAMN23213902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729253/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8094644546509 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.9753532409668 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.9402647018433 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815667 SAMN23214478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000729254/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4066390991211 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9870681762695 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7433662414551 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815668 SAMN23214435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000729255/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7276248931885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7426147460938 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7740077972412 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815669 SAMN23216578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729256/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0515842437744 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0196437835693 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7359104156494 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815670 SAMN23214956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000729257/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 64 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6990118026733 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4462966918945 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4565086364746 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815671 SAMN23214567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000725388/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8563022613525 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9258861541748 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6514091491699 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815672 SAMN23215530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725387/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.015043258667 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5177669525146 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3324871063232 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815673 SAMN23217422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725391/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1808700561523 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3034152984619 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1629428863525 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815674 SAMN23215529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725392/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2894010543823 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1313781738281 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7780361175537 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815675 SAMN23214063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725393/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0042324066162 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8323078155518 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7435836791992 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815676 SAMN23214062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725394/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.0586395263672 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.4243774414062 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.6612434387207 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815677 SAMN23214344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725395/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4849452972412 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6956768035889 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3547840118408 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815678 SAMN23214741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726002/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7800598144531 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9095764160156 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5825843811035 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815679 SAMN23214116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000726003/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6643085479736 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6815052032471 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5520038604736 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815680 SAMN23215528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726005/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0765476226807 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7832908630371 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5796279907227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815681 SAMN23217421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726004/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.75905418396 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8401756286621 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4148082733154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815682 SAMN23216150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726006/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.77467918396 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6699504852295 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2695159912109 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815683 SAMN23217420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726007/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1554126739502 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8804340362549 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9745922088623 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815684 SAMN23215527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726008/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3226337432861 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8447074890137 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.839864730835 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815685 SAMN23217419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726009/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6346817016602 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5824241638184 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.66530418396 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815686 SAMN23217418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726010/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6216678619385 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6512565612793 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3484649658203 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815687 SAMN23216149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726011/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7482795715332 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3720016479492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0407524108887 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815688 SAMN23217417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726012/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8381900787354 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2986164093018 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1335830688477 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815689 SAMN23216148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726013/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1371326446533 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8544006347656 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8183116912842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815690 SAMN23217416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726014/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4558029174805 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8841743469238 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8350582122803 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815691 SAMN23217414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726018/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3821334838867 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8086032867432 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3926010131836 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815692 SAMN23214061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726017/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1734838485718 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8178577423096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3869619369507 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815693 SAMN23217415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726016/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.8209276199341 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.2715549468994 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.8953342437744 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815694 SAMN23217413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726019/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5170726776123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7155437469482 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4116535186768 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815695 SAMN23217412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726021/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7445659637451 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7661571502686 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6157569885254 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815696 SAMN23215692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/HI-CDC-STM-000726024/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7769107818604 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4646015167236 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3264236450195 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815697 SAMN23216147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726023/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3828506469727 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2548522949219 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7646446228027 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815698 SAMN23216146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726026/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.055908203125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7688598632812 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4993877410889 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815699 SAMN23217411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726027/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7708625793457 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5360279083252 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7308788299561 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815700 SAMN23217410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726028/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.2222948074341 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.742205619812 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3069095611572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815701 SAMN23216145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726030/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7253398895264 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5381336212158 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4448833465576 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815702 SAMN23214060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726029/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4034061431885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5400791168213 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1769351959229 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815703 SAMN23216565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729328/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5645198822021 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7019214630127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4303493499756 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815704 SAMN23215184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729329/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5714244842529 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6391696929932 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7758979797363 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815705 SAMN23216564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729331/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7406616210938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7201042175293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5765438079834 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815706 SAMN23215923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729330/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9361991882324 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7609405517578 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4608459472656 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815707 SAMN23216563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729332/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8956317901611 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.262508392334 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0576324462891 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815708 SAMN23216562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729333/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4700412750244 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7682247161865 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7476902008057 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815709 SAMN23213895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729334/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8330612182617 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.4578056335449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.9792346954346 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815710 SAMN23216561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729335/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8468589782715 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8388824462891 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5416889190674 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815711 SAMN23215922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729336/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7990264892578 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7171173095703 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5201454162598 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815712 SAMN23216560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729338/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2431488037109 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4147548675537 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1972770690918 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815713 SAMN23216559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729339/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1222038269043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4714126586914 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4292106628418 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815714 SAMN23213894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729337/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6239967346191 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6807193756104 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3527984619141 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815715 SAMN23216558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729340/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7562847137451 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8342933654785 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6522598266602 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815716 SAMN23215921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729341/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4588832855225 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4799251556396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.147310256958 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815717 SAMN23214223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729342/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7266731262207 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4272727966309 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9872894287109 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815718 SAMN23215183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729344/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9267158508301 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1618499755859 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7136249542236 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815719 SAMN23216557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729343/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7668628692627 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8364772796631 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4136581420898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815720 SAMN23215920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729345/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8358755111694 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9096527099609 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7322864532471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815721 SAMN23216556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729346/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4125900268555 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4256687164307 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1946182250977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815722 SAMN23215182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729349/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.504150390625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3671684265137 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4613609313965 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815723 SAMN23215919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729347/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1434307098389 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0487670898438 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4988536834717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815724 SAMN23216555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729348/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7334823608398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0112457275391 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2374515533447 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815725 SAMN23214643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729350/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7258396148682 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8219509124756 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7116031646729 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815726 SAMN23213893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729352/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8321857452393 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1125793457031 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9233322143555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815727 SAMN23215918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729351/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0645065307617 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2537136077881 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9848442077637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815728 SAMN23216554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729353/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1620121002197 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9177703857422 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8655662536621 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815729 SAMN23215917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729354/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1402282714844 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0873241424561 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7161693572998 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815730 SAMN23213892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729355/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4573287963867 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0101089477539 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7428169250488 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815731 SAMN23215181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729357/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.75950050354 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2772636413574 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8187694549561 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815732 SAMN23214642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729356/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.253734588623 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9520168304443 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.821418762207 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815733 SAMN23215180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729358/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3129138946533 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8599166870117 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7260780334473 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815734 SAMN23215041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730518/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8059787750244 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9841079711914 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7227478027344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815735 SAMN23216553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729359/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7743473052979 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6282444000244 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2376480102539 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815736 SAMN23217577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730520/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7765502929688 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7260665893555 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3583793640137 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815737 SAMN23216344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730519/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8270320892334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9424686431885 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7034015655518 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815738 SAMN23216343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730521/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6973514556885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.135368347168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8286113739014 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815740 SAMN23215040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730524/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5693073272705 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1192607879639 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9153785705566 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815741 SAMN23213818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730523/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7583675384521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.065221786499 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4317226409912 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815742 SAMN23213816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730526/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8355751037598 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0895195007324 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0209465026855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815743 SAMN23213817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730525/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1455936431885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5356674194336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3640460968018 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815744 SAMN23215039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730527/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1933498382568 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.100944519043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8388156890869 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815745 SAMN23216341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730528/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7720413208008 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7999496459961 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3443717956543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815746 SAMN23215038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730529/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 31 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3757152557373 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3409366607666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8674869537354 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815747 SAMN23215037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730530/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5120964050293 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6143779754639 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0484313964844 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815748 SAMN23214783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730531/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0996856689453 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9239501953125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6697959899902 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815749 SAMN23216340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730532/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.128303527832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0286102294922 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0803413391113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815750 SAMN23213815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730533/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7529354095459 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.666934967041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3762493133545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815751 SAMN23215822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730534/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8406791687012 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8399505615234 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9496688842773 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815752 SAMN23215036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730535/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9874610900879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.1729106903076 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7835865020752 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815753 SAMN23214172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730536/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8877563476562 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0891456604004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8218288421631 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815754 SAMN23216339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730537/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7609615325928 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.9762878417969 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5618381500244 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815755 SAMN23215821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730538/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7368717193604 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4753932952881 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3447036743164 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815756 SAMN23216338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730539/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1034030914307 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2729930877686 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7468090057373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815757 SAMN23215820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730540/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8869590759277 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1645965576172 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9073486328125 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815739 SAMN23216342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730522/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.809061050415 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6141815185547 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2762241363525 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815758 SAMN23216337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730541/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.497522354126 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6882495880127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2067451477051 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815759 SAMN23216336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730542/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9582138061523 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.565788269043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.9904861450195 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815760 SAMN23213814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730543/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0815105438232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2014865875244 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8354816436768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815761 SAMN23214536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730544/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8356447219849 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7539215087891 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2417736053467 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815762 SAMN23216335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730545/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7737560272217 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8700180053711 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5920372009277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815763 SAMN23214595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730547/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4397850036621 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3703842163086 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1489505767822 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815764 SAMN23216334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730546/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2976341247559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1224575042725 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7543277740479 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815765 SAMN23215035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730548/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5900192260742 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7036724090576 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4182167053223 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815766 SAMN23215034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730549/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6775035858154 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4787445068359 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1853809356689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815767 SAMN23216791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727944/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7632083892822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8638782501221 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3049755096436 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815768 SAMN23215333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727942/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7794914245605 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8265228271484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6639842987061 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815769 SAMN23214386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-000727943/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4617595672607 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0027370452881 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8227272033691 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815770 SAMN23216790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727945/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2695074081421 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.325325012207 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1466865539551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815771 SAMN23217717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727947/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.787034034729 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.418420791626 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.2888298034668 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815772 SAMN23217618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000727949/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6223411560059 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4974708557129 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1441955566406 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815773 SAMN23216789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727950/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9347724914551 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4996929168701 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2568798065186 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815774 SAMN23216788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727952/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.214241027832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0337467193604 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8291721343994 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815775 SAMN23215332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727953/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7755355834961 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3071804046631 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8475303649902 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815776 SAMN23215331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727954/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3665466308594 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7250423431396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.275728225708 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815777 SAMN23217716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727955/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7804374694824 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7293891906738 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.583101272583 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815778 SAMN23216787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727956/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9063472747803 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7860660552979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5864295959473 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815779 SAMN23214688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727957/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2687644958496 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1352100372314 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9750785827637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815780 SAMN23215330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727958/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4162063598633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3769397735596 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1720123291016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815781 SAMN23215329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727959/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4513053894043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2660579681396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.292272567749 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815782 SAMN23215328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727960/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7828044891357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1686840057373 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.004753112793 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815783 SAMN23216786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727962/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1193408966064 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0368041992188 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8790416717529 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815784 SAMN23216785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727964/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0715751647949 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7660808563232 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7802696228027 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815785 SAMN23215326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727965/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9259281158447 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.433349609375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.445219039917 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815786 SAMN23215327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727963/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1125297546387 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.02392578125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7381286621094 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815787 SAMN23216022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727966/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7851314544678 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5488185882568 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2985610961914 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815788 SAMN23215325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727968/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1542053222656 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.252571105957 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7914848327637 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815789 SAMN23213971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727970/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6787147521973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4140701293945 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1792068481445 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815790 SAMN23215324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727971/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2489280700684 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4134826660156 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0778732299805 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815791 SAMN23214558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000727969/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0191211700439 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9420299530029 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7928981781006 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815792 SAMN23216784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727972/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6173000335693 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8342266082764 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4736347198486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815793 SAMN23215323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727973/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7091445922852 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7361602783203 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5900230407715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815794 SAMN23216021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727974/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2997007369995 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0724639892578 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7351064682007 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815795 SAMN23216783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727975/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0358724594116 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8184537887573 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.6039047241211 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815796 SAMN23216020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727976/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4540748596191 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0660018920898 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.658374786377 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815797 SAMN23215322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727977/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1882343292236 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8689384460449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8095245361328 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815798 SAMN23215321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727978/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5792064666748 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5544834136963 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3371677398682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815799 SAMN23215743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730653/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0446929931641 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1355476379395 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5677165985107 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815800 SAMN23216307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730654/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0916805267334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8322086334229 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7093868255615 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815801 SAMN23216306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730655/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7771434783936 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7820816040039 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5737571716309 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815802 SAMN23213754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000730656/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0694141387939 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3384265899658 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8028964996338 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815803 SAMN23216305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730657/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6425609588623 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5616645812988 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4418525695801 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815804 SAMN23214780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730658/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 33.9339752197266 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7850170135498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.820728302002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815805 SAMN23215742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730660/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4127521514893 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1330547332764 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7894706726074 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815806 SAMN23216304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730659/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.370080947876 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1039028167725 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9137802124023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815807 SAMN23214470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000730661/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.445032119751 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5870208740234 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2981357574463 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815808 SAMN23216303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730662/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7110233306885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3841762542725 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2941608428955 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815809 SAMN23213807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730663/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9271755218506 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.761905670166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5874443054199 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815810 SAMN23217765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000730664/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7974281311035 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8239936828613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5196113586426 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815811 SAMN23215741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730665/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4953632354736 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7755146026611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5459423065186 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815812 SAMN23216302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730666/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5472507476807 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7403964996338 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4803867340088 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815813 SAMN23215740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730667/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2024040222168 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8366737365723 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7730617523193 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815814 SAMN23214168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730668/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5122985839844 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7367305755615 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4678115844727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815815 SAMN23216301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730669/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1809825897217 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1568698883057 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0280838012695 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815816 SAMN23215025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730670/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5273475646973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7803688049316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2855606079102 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815817 SAMN23216300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730671/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3310260772705 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5543441772461 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1327838897705 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815818 SAMN23215739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730672/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7717418670654 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2969055175781 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7630062103271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815819 SAMN23215024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730673/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.8332691192627 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2089061737061 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9060392379761 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815820 SAMN23216299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730674/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9943180084229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6642265319824 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0032863616943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815821 SAMN23216298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730675/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0946846008301 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2014236450195 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8554592132568 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815822 SAMN23214501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000730676/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8790512084961 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4102058410645 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1237106323242 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815823 SAMN23214534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730677/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5402717590332 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4148902893066 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0801334381104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815824 SAMN23213806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730678/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5290660858154 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.808536529541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6228408813477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815825 SAMN23216297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730679/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1487903594971 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2892017364502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8967437744141 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815826 SAMN23215738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730680/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.0758008956909 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.2627229690552 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.7244825363159 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815827 SAMN23216296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730681/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6375818252563 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4008274078369 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3712329864502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815828 SAMN23215737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730682/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1779670715332 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1621036529541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7647476196289 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815829 SAMN23214401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000730683/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7918910980225 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6924247741699 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3699760437012 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815830 SAMN23216295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730684/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6742420196533 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1635856628418 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7872753143311 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815831 SAMN23216758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728057/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1293067932129 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0974540710449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7333564758301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815832 SAMN23214686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728056/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6083879470825 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.417875289917 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5425052642822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815833 SAMN23213961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728058/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2784271240234 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2510452270508 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8661594390869 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815834 SAMN23213960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728059/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2473793029785 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4269542694092 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3722553253174 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815835 SAMN23215311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728062/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.657772064209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6300964355469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4863624572754 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815836 SAMN23216757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728060/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8919019699097 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8365230560303 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7518978118896 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815837 SAMN23216756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728061/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2024784088135 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7537708282471 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6500911712646 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815838 SAMN23216012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728064/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5435276031494 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6474018096924 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6264095306396 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815839 SAMN23216755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728063/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3974094390869 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1221714019775 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8857498168945 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815840 SAMN23217616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728065/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0415573120117 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2869510650635 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7993946075439 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815841 SAMN23213959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728066/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.5184640884399 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.1705169677734 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.1264991760254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815842 SAMN23213958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728067/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8321628570557 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0082015991211 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8459796905518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815843 SAMN23216011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728068/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.733907699585 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8467693328857 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7870903015137 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815844 SAMN23213957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728070/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4668045043945 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8351287841797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.0311946868896 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815845 SAMN23216010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728071/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5520324707031 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3032836914062 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0969982147217 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815846 SAMN23215310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728072/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6531887054443 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5259532928467 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0060348510742 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815847 SAMN23216754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728073/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7568836212158 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.9309501647949 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8053569793701 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815848 SAMN23214817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728074/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8168525695801 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.799674987793 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7504177093506 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815849 SAMN23216009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728075/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3865032196045 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3394107818604 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2237854003906 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815850 SAMN23217615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728076/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.3930892944336 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.0736570358276 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.1681041717529 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815851 SAMN23215308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728078/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8280277252197 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7747173309326 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0911731719971 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815852 SAMN23215309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728077/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8093891143799 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9078788757324 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7721061706543 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815853 SAMN23216753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728079/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8485641479492 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0108890533447 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7208194732666 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815854 SAMN23215307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728080/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8230333328247 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8096332550049 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7546501159668 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815855 SAMN23217563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000728081/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1215324401855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.924352645874 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8200302124023 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815856 SAMN23214457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000728082/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7127056121826 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4426116943359 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1677551269531 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815857 SAMN23215306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728083/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3264122009277 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4270210266113 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3370208740234 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815858 SAMN23214557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000728084/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7110118865967 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5690135955811 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4376125335693 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815859 SAMN23215305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728085/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3867263793945 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6046276092529 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4087429046631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815860 SAMN23214816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728086/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1904239654541 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1958675384521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7893199920654 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815861 SAMN23216008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728088/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7944965362549 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6826019287109 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.524564743042 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815862 SAMN23213956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728089/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7469329833984 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0355396270752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7918319702148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815863 SAMN23214769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000730755/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.245662689209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1535739898682 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3140411376953 lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815864 SAMN23213799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730756/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5862522125244 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6707153320312 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3382034301758 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815865 SAMN23214161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730757/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9002151489258 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4145240783691 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9996395111084 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815866 SAMN23214160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730758/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7703132629395 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7047233581543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3816184997559 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815867 SAMN23216281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730759/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9165935516357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4181442260742 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7590141296387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815868 SAMN23214581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730760/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7875757217407 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7589693069458 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5801286697388 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815869 SAMN23216280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730762/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2188758850098 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.990837097168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7312927246094 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815870 SAMN23215005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730761/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7689628601074 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0752143859863 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.6829586029053 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815871 SAMN23215728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730763/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4053363800049 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7461185455322 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4397029876709 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815872 SAMN23214159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730764/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1664657592773 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7862586975098 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6293849945068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815873 SAMN23215004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730765/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7742385864258 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.2235126495361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8156299591064 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815874 SAMN23214469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000730766/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6490249633789 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8819885253906 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7245292663574 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815875 SAMN23215003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730767/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9991893768311 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3957023620605 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7693309783936 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815876 SAMN23216278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730770/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.070671081543 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0465087890625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7498817443848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815877 SAMN23216279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730768/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0797328948975 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1573448181152 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0059947967529 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815878 SAMN23213798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730769/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1251850128174 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9701957702637 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7659511566162 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815879 SAMN23215002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730771/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.187726020813 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2118129730225 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7278623580933 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815880 SAMN23216277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730772/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4979515075684 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4695720672607 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3249778747559 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815881 SAMN23216276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730773/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5997257232666 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.5990390777588 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2940616607666 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815882 SAMN23216275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730775/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7842292785645 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7939414978027 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5462741851807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815883 SAMN23214158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730774/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8251876831055 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8516044616699 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6038379669189 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815884 SAMN23214778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730777/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9933414459229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2444190979004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8408756256104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815885 SAMN23216274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730776/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7917461395264 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8457794189453 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5503578186035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815886 SAMN23216273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730779/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2349529266357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4873294830322 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2066268920898 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815887 SAMN23215727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730778/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.2924289703369 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8409051895142 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9946508407593 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815888 SAMN23215001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730780/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5977687835693 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.837366104126 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5387954711914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815889 SAMN23215000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730781/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7888526916504 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1934852600098 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7177848815918 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815890 SAMN23215726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730782/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 57 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8180904388428 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3311614990234 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7515869140625 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815891 SAMN23216272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730783/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6243839263916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5415744781494 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7650241851807 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815892 SAMN23215725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730785/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4804611206055 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3855838775635 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7883911132812 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815893 SAMN23214157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730784/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7471370697021 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3218460083008 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9607067108154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815894 SAMN23216271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730786/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7124347686768 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4473342895508 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4676551818848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815895 SAMN23214726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726480/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5197887420654 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0687370300293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6726684570312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815896 SAMN23217780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000726479/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.594331741333 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6141719818115 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2834548950195 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815897 SAMN23214042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726481/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1506538391113 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7695636749268 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6098823547363 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815898 SAMN23217340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726482/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4039134979248 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8015365600586 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5940284729004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815899 SAMN23215487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726484/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.0821838378906 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.1046943664551 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.7847385406494 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815900 SAMN23213761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000726483/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.807993888855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8162174224854 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5566558837891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815901 SAMN23214041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726485/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7218542098999 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6154975891113 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4812526702881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815902 SAMN23217743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726486/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4708518981934 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4515914916992 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3750667572021 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815903 SAMN23215486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726488/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5023918151855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9859962463379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6163997650146 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815904 SAMN23217742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726487/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8887233734131 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4600276947021 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1563777923584 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815905 SAMN23214040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726491/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.6994428634644 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.7794322967529 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.8401212692261 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815906 SAMN23215485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726492/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8713703155518 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8236637115479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7104949951172 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815907 SAMN23217641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726493/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3838148117065 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4610595703125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2973823547363 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815908 SAMN23217339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726495/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6174926757812 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6687622070312 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3980121612549 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815909 SAMN23214322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726494/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8213348388672 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9088306427002 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5884571075439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815910 SAMN23214565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000726502/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2360372543335 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1299152374268 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3216381072998 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815911 SAMN23217338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726503/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4995403289795 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4035835266113 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2874145507812 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815912 SAMN23215484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726504/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6639366149902 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8757858276367 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7719802856445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815913 SAMN23214725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726505/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2748489379883 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1946792602539 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1321277618408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815914 SAMN23217337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726506/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0935516357422 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2766151428223 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7201519012451 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815915 SAMN23215483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726507/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2334423065186 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0766868591309 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1826992034912 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815916 SAMN23216119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726508/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.157657623291 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9192523956299 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7664051055908 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815917 SAMN23217336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726510/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4877262115479 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7488746643066 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.642053604126 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815918 SAMN23214464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-000726509/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9073734283447 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0452671051025 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7130336761475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815919 SAMN23214039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726511/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6578159332275 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8629150390625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4887619018555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815920 SAMN23214321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726513/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8754272460938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5680751800537 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4525775909424 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815921 SAMN23215482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726512/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6799545288086 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8152675628662 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8187618255615 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815922 SAMN23214119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SD-CDC-STM-000726514/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8250026702881 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6371631622314 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4835243225098 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815923 SAMN23214320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726515/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8387308120728 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.241174697876 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.1215305328369 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815924 SAMN23215481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726516/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8548641204834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5384387969971 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3754539489746 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815925 SAMN23216118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726517/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9250907897949 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2821598052979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8193817138672 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815926 SAMN23215480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726518/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.623514175415 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4618625640869 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.783863067627 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815927 SAMN23214151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730891/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7852058410645 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7667980194092 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4912643432617 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815928 SAMN23216244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730892/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3330097198486 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3745422363281 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9452724456787 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815929 SAMN23216243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730893/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2651615142822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7613201141357 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.6860466003418 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815930 SAMN23214150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730894/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6354904174805 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.62180519104 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5215835571289 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815931 SAMN23213792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000731073/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9755210876465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7618770599365 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5898571014404 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815932 SAMN23213791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000731120/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0787715911865 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.368896484375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2547607421875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815933 SAMN23214980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000731119/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8167304992676 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1976909637451 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8259391784668 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815934 SAMN23216242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731121/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6586656570435 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8719673156738 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4961814880371 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815935 SAMN23216241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731123/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8257503509521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9422817230225 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6485424041748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815936 SAMN23214847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000731122/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6799278259277 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8038311004639 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6670360565186 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815937 SAMN23215706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000731124/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6942081451416 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3641891479492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8052768707275 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815938 SAMN23214574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000731125/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1998119354248 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0636425018311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5679683685303 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815939 SAMN23213790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000731126/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.422290802002 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6737651824951 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5282306671143 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815940 SAMN23216239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731128/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.581506729126 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4660987854004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0468578338623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815941 SAMN23216240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731127/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4168758392334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3700485229492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1332530975342 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815942 SAMN23216238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731130/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6134757995605 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.479793548584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2938442230225 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815943 SAMN23213789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000731129/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7513809204102 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6316757202148 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4673843383789 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815944 SAMN23216237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731131/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.365198135376 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3076438903809 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0547122955322 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815945 SAMN23216236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731132/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7496643066406 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5669326782227 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2334861755371 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815946 SAMN23216235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731133/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1899967193604 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5597095489502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1062240600586 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815947 SAMN23215705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000731134/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.172945022583 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0409355163574 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7847385406494 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815948 SAMN23214979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000731135/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7486743927002 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.9297008514404 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1561622619629 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815949 SAMN23213788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000731136/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2156105041504 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9265041351318 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7655773162842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815950 SAMN23214528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000731138/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7531890869141 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9528121948242 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6115627288818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815951 SAMN23214397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000731140/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7431373596191 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4746856689453 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1350135803223 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815952 SAMN23214978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000731139/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7883739471436 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7694187164307 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5218830108643 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815953 SAMN23216234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731137/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5145645141602 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7488136291504 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3776912689209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815954 SAMN23216233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731141/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9064540863037 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8179340362549 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.657075881958 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815955 SAMN23216232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731142/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2479267120361 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1951713562012 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7700290679932 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815956 SAMN23215704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000731143/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5049304962158 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6580619812012 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1935920715332 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815957 SAMN23214977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000731146/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4553718566895 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8373737335205 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4816417694092 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815958 SAMN23216231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731147/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3685874938965 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4084320068359 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1084403991699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815959 SAMN23214829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000726551/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8272361755371 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7795219421387 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6221122741699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815960 SAMN23216110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726552/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8086433410645 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.4633665084839 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.4129257202148 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815961 SAMN23214422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000726554/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8976783752441 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9343166351318 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.257043838501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815962 SAMN23217329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726555/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2896823883057 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3673286437988 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8469371795654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815963 SAMN23217328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726556/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5193843841553 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0858955383301 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8116455078125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815964 SAMN23215469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726553/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9407691955566 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3105201721191 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.078670501709 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815965 SAMN23215468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726558/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1001853942871 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1486015319824 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0098457336426 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815966 SAMN23217762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AR-CDC-STM-000726557/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4434814453125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3292961120605 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.070463180542 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815967 SAMN23217327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726559/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0984382629395 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9516544342041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7619247436523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815968 SAMN23216109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726560/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.138240814209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4384689331055 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3325729370117 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815969 SAMN23214036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726561/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7088985443115 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7683925628662 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5591659545898 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815970 SAMN23217326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726562/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6122455596924 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4894981384277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4908466339111 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815971 SAMN23217639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726563/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4186267852783 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2741851806641 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0637321472168 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815972 SAMN23214421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000726564/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6711502075195 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0672664642334 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7983665466309 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815973 SAMN23214514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000726565/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.5784139633179 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7217607498169 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.6156845092773 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815974 SAMN23214828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000726566/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4337844848633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4559478759766 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2104377746582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815975 SAMN23215677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726567/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9045257568359 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7923831939697 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.747314453125 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815976 SAMN23216108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726568/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5785655975342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2746734619141 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8036365509033 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815977 SAMN23215690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/HI-CDC-STM-000726569/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1709156036377 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4574546813965 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4546413421631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815978 SAMN23214318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726571/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5529804229736 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3472537994385 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2819385528564 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815979 SAMN23214443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000726572/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9069986343384 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6703834533691 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0393829345703 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815980 SAMN23217638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726570/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3778343200684 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1370029449463 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7325954437256 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815981 SAMN23215467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726573/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8383312225342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.842435836792 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7810764312744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815982 SAMN23215466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726574/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3999462127686 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4367046356201 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9951934814453 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815983 SAMN23217325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726575/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4491195678711 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3921394348145 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0551052093506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815984 SAMN23214564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000726576/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8980083465576 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7582588195801 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0190315246582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815985 SAMN23214035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726577/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2563152313232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0275745391846 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8207874298096 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815986 SAMN23217324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726578/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8609523773193 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7492389678955 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5043029785156 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815987 SAMN23217323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726579/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6803779602051 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4905338287354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6206436157227 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815988 SAMN23217322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726580/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9630260467529 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7098388671875 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4346084594727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815989 SAMN23216107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726581/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6396808624268 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2977905273438 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3130016326904 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815990 SAMN23216215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724106/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1673641204834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2157402038574 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0701751708984 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815991 SAMN23217321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726582/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8376884460449 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4513740539551 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8446083068848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815992 SAMN23216214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724107/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2914123535156 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8110961914062 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.765115737915 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815993 SAMN23216213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724108/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3979015350342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2161865234375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9422283172607 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815994 SAMN23216212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724109/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1689586639404 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2956466674805 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0753040313721 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815995 SAMN23217545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724110/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7099094390869 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.213342666626 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.63818359375 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815996 SAMN23215638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724111/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9000949859619 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1705150604248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6350517272949 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815997 SAMN23217543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724113/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0980262756348 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.153507232666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8342475891113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815998 SAMN23217544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724112/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0112743377686 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5537223815918 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3779850006104 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12815999 SAMN23215637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724114/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4560689926147 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3214588165283 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4010791778564 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816000 SAMN23215636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724115/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6311721801758 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4925346374512 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4673328399658 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816001 SAMN23215635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724116/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9793376922607 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1575775146484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7967910766602 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816002 SAMN23217542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724117/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.743724822998 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7579326629639 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.66184425354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816003 SAMN23215634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724118/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7539005279541 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7984371185303 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6677646636963 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816004 SAMN23214103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724119/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.668327331543 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.774263381958 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3274230957031 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816005 SAMN23214768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724120/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2423496246338 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1390953063965 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7558336257935 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816006 SAMN23216211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724122/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.3909034729004 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.0314836502075 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.0227251052856 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816007 SAMN23217541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724121/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.441032409668 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5004119873047 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1439819335938 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816008 SAMN23214379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724123/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8006782531738 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6728992462158 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8343811035156 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816009 SAMN23217568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000724124/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8202953338623 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4346923828125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.294261932373 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816010 SAMN23216210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724125/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6854801177979 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5728588104248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.6350975036621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816011 SAMN23217540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724126/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7426891326904 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8148803710938 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7104167938232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816012 SAMN23217539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724127/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.612325668335 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5464057922363 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2945003509521 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816013 SAMN23217538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724128/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7582626342773 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1259746551514 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1012897491455 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816014 SAMN23214378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724129/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7976160049438 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.8209114074707 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.5939617156982 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816015 SAMN23214949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000724131/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7785415649414 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4448719024658 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3914203643799 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816016 SAMN23215632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724132/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7819499969482 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4976711273193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.286657333374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816017 SAMN23215633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724130/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8378410339355 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7508506774902 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5987606048584 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816018 SAMN23214429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000724134/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7953929901123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8441505432129 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.595588684082 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816019 SAMN23215631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724135/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5260791778564 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4724655151367 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2069721221924 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816020 SAMN23213763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000724133/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8947525024414 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9670829772949 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6793823242188 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816021 SAMN23215630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724136/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7723484039307 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6783981323242 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6164932250977 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816022 SAMN23217537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724137/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.59983253479 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6087760925293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3307361602783 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816023 SAMN23216101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726661/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7969627380371 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5611553192139 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3879127502441 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816024 SAMN23215457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726663/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2231826782227 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.291618347168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9274482727051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816025 SAMN23217294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726664/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0539875030518 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1510219573975 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6716060638428 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816026 SAMN23217739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726667/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1148433685303 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9256896972656 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8026142120361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816027 SAMN23217293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726668/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2262401580811 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2153358459473 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8379878997803 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816028 SAMN23216100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726666/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.747142791748 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5058269500732 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4093856811523 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816029 SAMN23217292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726669/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0055465698242 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2341785430908 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9788703918457 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816030 SAMN23217290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726671/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.723237991333 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.1115550994873 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4987411499023 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816031 SAMN23217289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726672/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0619163513184 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7580261230469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7684803009033 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816032 SAMN23214026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726673/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5953884124756 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7986660003662 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3710422515869 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816033 SAMN23217291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726670/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.270133972168 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1927738189697 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9118957519531 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816034 SAMN23217633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726674/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9243431091309 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9750957489014 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8085079193115 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816035 SAMN23216099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726675/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0373859405518 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6963405609131 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6330585479736 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816036 SAMN23217288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726676/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.723237991333 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.1115550994873 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4987411499023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816037 SAMN23217287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726678/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 26.3315773010254 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5948219299316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4388103485107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816038 SAMN23214310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726677/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1004085540771 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8066673278809 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7555351257324 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816039 SAMN23217286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726679/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8205528259277 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0693798065186 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7030124664307 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816040 SAMN23217285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726680/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3713531494141 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8823680877686 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9116697311401 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816041 SAMN23214724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726683/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.304407119751 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4011840820312 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9781074523926 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816042 SAMN23215456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726681/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1172542572021 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.314640045166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7995643615723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816043 SAMN23214723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726685/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6589431762695 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.43528175354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2954845428467 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816044 SAMN23217284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726687/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0619163513184 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7580261230469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7684803009033 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816045 SAMN23214722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726688/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6589431762695 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.43528175354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2954845428467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816046 SAMN23214025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726689/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4032688140869 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4929962158203 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1761608123779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816047 SAMN23214024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726691/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4294052124023 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4317016601562 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9383869171143 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816048 SAMN23217282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726694/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7762889862061 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7773742675781 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.627721786499 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816049 SAMN23216098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726692/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1976985931396 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2389965057373 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3434104919434 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816050 SAMN23215244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728952/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5517101287842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7912311553955 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6381225585938 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816051 SAMN23217283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726693/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3782863616943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0264320373535 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.710428237915 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816052 SAMN23215243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728953/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5544109344482 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3919334411621 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1838245391846 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816053 SAMN23215242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728954/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3834247589111 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2265319824219 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0075340270996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816054 SAMN23213926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728955/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7078819274902 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.7403221130371 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8147583007812 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816055 SAMN23215239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728958/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.4350538253784 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.3507804870605 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.4146146774292 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816056 SAMN23215241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728956/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.106969833374 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8266353607178 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6177616119385 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816057 SAMN23215240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728957/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.8924217224121 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.721396446228 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.4784145355225 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816058 SAMN23216677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728959/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2051639556885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2563323974609 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7507972717285 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816059 SAMN23215963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728960/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3760414123535 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3039035797119 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.566520690918 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816060 SAMN23215962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728961/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8103103637695 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1165676116943 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5422229766846 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816061 SAMN23215238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728962/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5186805725098 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6073684692383 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3334980010986 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816062 SAMN23214667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728963/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7829475402832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.293888092041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3212738037109 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816063 SAMN23216676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728964/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0509700775146 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8069458007812 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5221710205078 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816064 SAMN23215960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728966/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9582328796387 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7808475494385 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2939414978027 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816065 SAMN23215961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728965/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7725048065186 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3531341552734 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7575836181641 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816066 SAMN23214666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728968/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2713165283203 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.9881200790405 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7722806930542 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816067 SAMN23215959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728967/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7953109741211 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8027839660645 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5286483764648 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816068 SAMN23214665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728970/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9734554290771 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0281944274902 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.729829788208 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816069 SAMN23215237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728969/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2371921539307 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5035705566406 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2575187683105 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816070 SAMN23213925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728972/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3163814544678 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4199123382568 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9210872650146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816071 SAMN23213924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728973/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7182350158691 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.82883644104 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8155269622803 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816072 SAMN23216673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728976/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8294944763184 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7796039581299 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7076988220215 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816073 SAMN23216672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728977/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.032377243042 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1650047302246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8157939910889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816074 SAMN23216675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728974/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8391819000244 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8089485168457 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4754238128662 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816075 SAMN23216674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728975/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3186283111572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6585216522217 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0520610809326 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816076 SAMN23215236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728979/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3896980285645 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3711585998535 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0220050811768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816077 SAMN23214664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728978/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6347103118896 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3928184509277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1532173156738 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816078 SAMN23214805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728980/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3398208618164 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1236324310303 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7217464447021 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816079 SAMN23213781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/UT-CDC-STM-000730240/2021 collected_by 'Helix' collection_date 2021-09-06 isolation_source nasal swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7584285736084 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8013973236084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6077919006348 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816080 SAMN23216671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728981/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5043525695801 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5037422180176 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9701309204102 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816081 SAMN23213766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000730242/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0810890197754 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7067546844482 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.396354675293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816082 SAMN23216409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730241/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7185935974121 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7826251983643 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6063365936279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816083 SAMN23216408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730243/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3223571777344 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1593894958496 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6398220062256 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816084 SAMN23215090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730244/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4399738311768 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6179504394531 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7413368225098 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816085 SAMN23216407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730245/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7650260925293 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7664222717285 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.578182220459 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816086 SAMN23215089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730247/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7951698303223 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5772304534912 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4146575927734 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816087 SAMN23215088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730248/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6058368682861 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6165313720703 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6511878967285 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816088 SAMN23217761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AR-CDC-STM-000730246/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3114700317383 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3740291595459 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8583526611328 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816089 SAMN23215087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730249/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.493688583374 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1812305450439 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6306133270264 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816090 SAMN23216406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730250/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6701011657715 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6432704925537 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2909545898438 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816091 SAMN23214787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730251/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6181297302246 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6839427947998 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4276371002197 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816092 SAMN23216405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730252/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7878704071045 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7421245574951 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2757987976074 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816093 SAMN23214189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730253/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7723178863525 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7670097351074 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5217800140381 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816094 SAMN23215855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730255/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8726806640625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.1074657440186 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.6992931365967 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816095 SAMN23215854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730256/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1342945098877 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0274829864502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7202911376953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816096 SAMN23216404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730257/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7298221588135 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6407890319824 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1645774841309 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816097 SAMN23214609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730254/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7763595581055 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1960144042969 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9984149932861 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816098 SAMN23215086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730258/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3802452087402 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1094837188721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.810962677002 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816099 SAMN23215853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730259/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8298816680908 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0323581695557 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.48193359375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816100 SAMN23217548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-000730260/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7697315216064 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8180046081543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8252124786377 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816101 SAMN23215085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730261/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1866798400879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1018924713135 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6414947509766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816102 SAMN23216403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730263/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6993789672852 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7624549865723 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5214691162109 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816103 SAMN23215084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730262/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7550506591797 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9811611175537 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1731147766113 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816104 SAMN23213843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730264/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8114261627197 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9485130310059 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7376365661621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816105 SAMN23216402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730265/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2010612487793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0944404602051 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6085014343262 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816106 SAMN23215083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730266/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1726684570312 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9105281829834 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0791320800781 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816107 SAMN23214188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730267/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2644290924072 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3922843933105 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.057445526123 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816108 SAMN23215852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730268/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7068672180176 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6478252410889 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4533023834229 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816109 SAMN23214540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730269/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.788854598999 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4806976318359 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.412712097168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816110 SAMN23216401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730270/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.8819131851196 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7129535675049 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7024059295654 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816111 SAMN23216400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730271/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5247840881348 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.9352226257324 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7152729034424 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816112 SAMN23216648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729052/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.308141708374 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4031429290771 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2283592224121 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816113 SAMN23216647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729053/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7472724914551 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5385971069336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.853048324585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816114 SAMN23215952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729054/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8277950286865 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6325397491455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3581295013428 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816115 SAMN23213917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729056/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9610233306885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.2423763275146 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.0080375671387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816116 SAMN23215951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729055/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6920166015625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9376125335693 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5292797088623 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816117 SAMN23216646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729057/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7704601287842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6759452819824 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5694160461426 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816118 SAMN23216645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729058/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0624141693115 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7990550994873 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5652828216553 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816119 SAMN23216644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729059/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8228378295898 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1585693359375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8926334381104 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816120 SAMN23216643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729060/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4170703887939 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1202850341797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8294219970703 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816122 SAMN23214550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000729062/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8310852050781 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8939151763916 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6450939178467 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816123 SAMN23214657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729063/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6888046264648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8152904510498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7410583496094 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816124 SAMN23216642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729065/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7878475189209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6330127716064 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4983234405518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816125 SAMN23213916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729064/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8839139938354 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.411714553833 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.9980163574219 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816126 SAMN23216641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729066/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.365177154541 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8006458282471 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7352313995361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816127 SAMN23215950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729067/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.748685836792 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1098079681396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6668949127197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816128 SAMN23216640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729069/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5643100738525 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2627239227295 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0415096282959 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816129 SAMN23217695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729068/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5998477935791 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.531192779541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4079189300537 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816130 SAMN23214549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000729070/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5195999145508 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5955963134766 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.449291229248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816131 SAMN23215656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000729071/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5575866699219 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.836856842041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7093544006348 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816132 SAMN23217694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729072/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.905143737793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.9511241912842 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.6990051269531 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816133 SAMN23216639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729073/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 25.7779960632324 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.59521484375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6597194671631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816134 SAMN23214656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729074/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7197723388672 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7268257141113 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.385440826416 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816135 SAMN23216638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729075/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0033950805664 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8780155181885 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7995433807373 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816136 SAMN23214548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000729076/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2602005004883 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3297023773193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.833309173584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816137 SAMN23216637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729077/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2102432250977 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4857139587402 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8880100250244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816138 SAMN23216636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729078/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3710250854492 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4860820770264 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1342067718506 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816139 SAMN23216635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729079/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2218837738037 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2879009246826 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7604656219482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816140 SAMN23216634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729081/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3282527923584 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2846832275391 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9675693511963 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816141 SAMN23213915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729080/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0786933898926 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1672840118408 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7836933135986 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816121 SAMN23214551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000729061/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6276397705078 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3833236694336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.288158416748 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816142 SAMN23216633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729082/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.220874786377 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3568840026855 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.256986618042 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816143 SAMN23213914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729083/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3447418212891 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.330530166626 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8672275543213 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816144 SAMN23217279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726706/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.090274810791 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2814559936523 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7449588775635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816145 SAMN23214022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726707/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6530361175537 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5132789611816 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3276329040527 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816146 SAMN23215455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726708/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.63942527771 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5786933898926 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4810485839844 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816147 SAMN23216096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726709/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6222267150879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3721714019775 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3221549987793 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816148 SAMN23217278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726710/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9907321929932 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9647235870361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7262763977051 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816149 SAMN23214309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726711/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2588996887207 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0438861846924 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8358287811279 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816150 SAMN23217632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726712/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6128177642822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6660671234131 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2693061828613 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816151 SAMN23217631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726713/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7103424072266 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.4964332580566 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.0762996673584 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816152 SAMN23217277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726714/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6725635528564 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.63525390625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3787746429443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816153 SAMN23217738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726715/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5278739929199 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.506311416626 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2104644775391 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816154 SAMN23217737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726716/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0570316314697 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3192939758301 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8405456542969 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816155 SAMN23215454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726717/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0770835876465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8354949951172 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.766996383667 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816156 SAMN23217276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726718/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2269077301025 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7987747192383 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7775135040283 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816157 SAMN23214308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726720/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5035972595215 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7989978790283 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5813140869141 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816158 SAMN23215453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726721/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7978630065918 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8227043151855 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6814785003662 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816159 SAMN23217275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726719/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2683391571045 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8045253753662 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6123676300049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816160 SAMN23214307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726722/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7601127624512 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8985176086426 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6550788879395 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816161 SAMN23214021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726723/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8816776275635 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6330451965332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3552665710449 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816162 SAMN23217274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726724/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4832382202148 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4833183288574 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2186107635498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816163 SAMN23217630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726725/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7826824188232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6788902282715 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3478584289551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816164 SAMN23217736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726726/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7345342636108 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8871936798096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4127788543701 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816165 SAMN23217629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726727/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7229843139648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7271022796631 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3725757598877 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816166 SAMN23214489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000726728/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7393398284912 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5832614898682 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0877227783203 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816167 SAMN23215452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726729/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3740196228027 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4319553375244 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0279655456543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816168 SAMN23215451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726730/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7632522583008 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8011035919189 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4912662506104 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816169 SAMN23217628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726731/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1852474212646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8377780914307 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1603031158447 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816170 SAMN23214721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726732/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7458629608154 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8328952789307 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3671283721924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816171 SAMN23214020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726733/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1859149932861 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2973346710205 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1177730560303 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816172 SAMN23217735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726734/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.770357131958 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6823024749756 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.560962677002 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816173 SAMN23217734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726735/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9518451690674 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0432376861572 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.762565612793 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816174 SAMN23215689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/HI-CDC-STM-000726736/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8943672180176 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.5300483703613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.7338695526123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816175 SAMN23217273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726737/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8974990844727 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.809534072876 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7128620147705 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816176 SAMN23213772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000724170/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6787185668945 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8207778930664 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6516304016113 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816177 SAMN23214375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724171/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7702350616455 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4978408813477 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9487018585205 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816178 SAMN23215626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724172/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9931316375732 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1695709228516 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9238548278809 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816179 SAMN23217527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724174/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8274955749512 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8238067626953 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6375427246094 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816180 SAMN23215625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724173/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1474628448486 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.294921875 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9408073425293 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816181 SAMN23215624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724175/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3636169433594 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0390167236328 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8012390136719 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816182 SAMN23214374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724176/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.3513402938843 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.9985294342041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7712392807007 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816183 SAMN23217763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AR-CDC-STM-000724177/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3876476287842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7622966766357 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7046222686768 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816184 SAMN23215695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/HI-CDC-STM-000724178/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9969062805176 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8267288208008 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8261909484863 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816185 SAMN23214373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724179/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7624273300171 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7866020202637 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5026836395264 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816186 SAMN23215623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724180/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.218168258667 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8286228179932 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5842819213867 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816187 SAMN23216201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724182/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9153118133545 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8165988922119 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7031421661377 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816188 SAMN23213780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000724181/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7781925201416 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.5926570892334 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4809188842773 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816189 SAMN23214099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724183/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.11083984375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1027984619141 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7341594696045 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816190 SAMN23214140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000724184/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7083072662354 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5850257873535 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1984329223633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816191 SAMN23214395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OK-CDC-STM-000724185/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Not Provided collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0201005935669 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7872524261475 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5636711120605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816192 SAMN23214775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000724186/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1445465087891 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5617446899414 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4142532348633 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816193 SAMN23214098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724187/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1669673919678 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0315704345703 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.982931137085 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816194 SAMN23217526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724188/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9380626678467 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2753086090088 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9414138793945 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816195 SAMN23217525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724190/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.799560546875 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9259586334229 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6348476409912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816196 SAMN23217524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724191/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.401554107666 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4900569915771 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0229949951172 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816197 SAMN23216200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724192/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7449226379395 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.5373258590698 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.2784767150879 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816198 SAMN23215622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724193/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.425235748291 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2232856750488 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1336784362793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816199 SAMN23216199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724194/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5066089630127 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.651575088501 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3909454345703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816200 SAMN23217523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724303/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1333999633789 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0470123291016 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.9407482147217 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816201 SAMN23216198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724195/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6702842712402 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6844005584717 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2739124298096 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816202 SAMN23217522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724304/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.330171585083 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.311206817627 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0950145721436 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816203 SAMN23217521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724305/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8032913208008 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4487075805664 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2301635742188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816204 SAMN23214372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724306/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.5081338882446 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.900484085083 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.7578105926514 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816205 SAMN23214948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000724308/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5735759735107 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6559085845947 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6476383209229 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816206 SAMN23214097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724307/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2196769714355 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9059467315674 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.77903175354 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816207 SAMN23214764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724309/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.750904083252 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9366245269775 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6881656646729 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816208 SAMN23215662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000728802/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.3464469909668 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.3646259307861 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.4190330505371 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816209 SAMN23213935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728804/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.5791091918945 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 32.4551849365234 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 31.1200199127197 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816210 SAMN23214808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728806/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.7388896942139 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.9897289276123 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.4012794494629 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816211 SAMN23216694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728805/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0368709564209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.5448665618896 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.0901508331299 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816212 SAMN23216693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728807/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.1638202667236 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7593250274658 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.9110946655273 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816213 SAMN23216692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728808/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.721492767334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 33.9681396484375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 32.7418899536133 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816214 SAMN23214250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728816/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.3334693908691 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7856597900391 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.035493850708 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816215 SAMN23213933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728828/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0499782562256 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.2498607635498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.7998733520508 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816216 SAMN23216691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728822/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.2183074951172 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.0514163970947 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.8016014099121 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816217 SAMN23213934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728823/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.7562522888184 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.1317005157471 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.7179260253906 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816218 SAMN23215259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728829/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.6210460662842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.8117542266846 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.3788833618164 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816219 SAMN23215258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728832/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.3888034820557 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.4398040771484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.5634498596191 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816220 SAMN23215661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000728834/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.2328357696533 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.8202037811279 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.3254222869873 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816221 SAMN23215257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728835/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.2165374755859 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.3673210144043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.516242980957 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816222 SAMN23214482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000728836/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.9139137268066 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.5799331665039 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.8100147247314 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816223 SAMN23214668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728837/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.7537250518799 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7684726715088 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.7099952697754 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816224 SAMN23215660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000728838/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0238151550293 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.8443908691406 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.8386039733887 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816225 SAMN23215256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728839/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.5892467498779 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.6379089355469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.6304035186768 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816226 SAMN23215974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728840/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.017147064209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.2439765930176 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.7830066680908 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816227 SAMN23215255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728842/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.7532901763916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.7831974029541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.8946990966797 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816228 SAMN23213932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728841/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0879287719727 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.5234222412109 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.7517528533936 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816229 SAMN23215254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728843/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0688076019287 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.2524890899658 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.8827342987061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816230 SAMN23215973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728846/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.9483280181885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.3955211639404 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.201042175293 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816231 SAMN23216690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728847/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.152494430542 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.779972076416 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.2961120605469 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816232 SAMN23213931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728848/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.2440795898438 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.832592010498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.0810966491699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816233 SAMN23216689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728849/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.7618370056152 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.7761478424072 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.5036067962646 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816234 SAMN23216688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728852/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.2793045043945 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.3794555664062 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.771915435791 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816235 SAMN23217610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728854/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.8898429870605 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.2213726043701 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.3096790313721 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816236 SAMN23215972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728855/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.7349224090576 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.9922618865967 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.2794494628906 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816237 SAMN23213930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728856/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.4243335723877 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.5120372772217 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.5775012969971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816238 SAMN23214110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000728860/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.7617931365967 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.8179340362549 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.5525054931641 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816239 SAMN23216687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728861/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.606517791748 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.2670192718506 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.7833709716797 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816240 SAMN23216186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724415/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8155479431152 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.102840423584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8086814880371 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816241 SAMN23216187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724414/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1198387145996 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.174711227417 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.964298248291 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816242 SAMN23217495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724416/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0679531097412 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7636852264404 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5453014373779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816243 SAMN23214943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000724419/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2941226959229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8008460998535 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6600646972656 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816244 SAMN23217494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724420/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7975311279297 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1745853424072 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0527572631836 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816245 SAMN23214761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724418/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8340129852295 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5862827301025 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4650535583496 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816246 SAMN23215694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/HI-CDC-STM-000724421/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9289779663086 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6253108978271 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4827976226807 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816247 SAMN23214090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724423/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3927631378174 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6716709136963 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1523742675781 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816248 SAMN23217493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724422/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5032329559326 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7701759338379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9677104949951 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816249 SAMN23214089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724424/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6795768737793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6814403533936 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5142288208008 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816250 SAMN23215686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000724425/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9964046478271 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9865188598633 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7873115539551 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816251 SAMN23215606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724426/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.283031463623 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.579122543335 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3384170532227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816252 SAMN23217492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724427/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4396018981934 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6754093170166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3714504241943 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816253 SAMN23214426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000724428/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8113555908203 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8632926940918 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2490501403809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816254 SAMN23215605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724429/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8834400177002 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8712482452393 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6630573272705 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816255 SAMN23217491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724430/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9808263778687 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7979469299316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.1180362701416 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816256 SAMN23217490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724431/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5144519805908 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7263622283936 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7921371459961 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816257 SAMN23214760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724432/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1353855133057 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6904964447021 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4104480743408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816258 SAMN23217489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724433/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0621852874756 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8249359130859 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7700386047363 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816259 SAMN23214366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724434/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0165386199951 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4133853912354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9283332824707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816260 SAMN23214759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724435/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4069023132324 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8139877319336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5210304260254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816261 SAMN23214365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724436/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8043098449707 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7972221374512 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.686014175415 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816262 SAMN23215604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724437/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.477819442749 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4724998474121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2878341674805 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816263 SAMN23217488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724438/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4093608856201 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.977180480957 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5422286987305 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816264 SAMN23214364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724439/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.502799987793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0224876403809 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8345470428467 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816265 SAMN23214363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724440/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1913642883301 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1476421356201 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3637409210205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816266 SAMN23217487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724441/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7710752487183 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4127731323242 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4144382476807 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816267 SAMN23215603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724443/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8817405700684 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3137130737305 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.001953125 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816268 SAMN23215602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724444/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2525749206543 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0832443237305 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.640645980835 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816269 SAMN23216185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724445/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2031421661377 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9251289367676 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7173824310303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816270 SAMN23217486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724446/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9738426208496 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7018661499023 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4510059356689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816271 SAMN23214362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724447/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7330551147461 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.889310836792 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7258472442627 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816272 SAMN23214519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000729967/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8223628997803 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7698974609375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7151622772217 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816273 SAMN23215123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729968/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5985870361328 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6353645324707 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6367244720459 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816274 SAMN23216443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729969/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6764850616455 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3770847320557 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2778911590576 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816275 SAMN23215122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729970/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3620529174805 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5082988739014 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.368013381958 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816276 SAMN23215873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729971/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3085632324219 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5035419464111 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2421455383301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816277 SAMN23215121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729974/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1741504669189 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2191257476807 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8281154632568 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816278 SAMN23213859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729972/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Not Provided collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0914077758789 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9978809356689 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6418781280518 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816279 SAMN23214389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OK-CDC-STM-000729973/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0430603027344 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.725227355957 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3717136383057 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816280 SAMN23216442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729975/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6114349365234 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2639865875244 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2322006225586 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816281 SAMN23217561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000729977/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5750951766968 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6276111602783 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4008388519287 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816282 SAMN23214790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729976/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7866735458374 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0997753143311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8123092651367 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816283 SAMN23215120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729978/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8243083953857 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7500915527344 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4954528808594 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816284 SAMN23215119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729979/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9062366485596 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7787971496582 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6125354766846 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816285 SAMN23215872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729980/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4190254211426 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1798458099365 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.764554977417 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816286 SAMN23215118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729981/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.249885559082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0231418609619 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8108253479004 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816287 SAMN23214623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729982/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8981695175171 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8041210174561 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6624908447266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816288 SAMN23215117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729983/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8123588562012 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0050487518311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.590784072876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816289 SAMN23213858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729985/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8518829345703 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9097175598145 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6251087188721 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816290 SAMN23216441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729984/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.175085067749 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9360599517822 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8168926239014 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816291 SAMN23215116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729986/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3946323394775 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3934917449951 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0851612091064 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816292 SAMN23213857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729987/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6678295135498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6656093597412 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4210739135742 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816293 SAMN23215115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729988/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3679294586182 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.362699508667 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0527744293213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816294 SAMN23217589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729989/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7890186309814 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7709922790527 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6586723327637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816295 SAMN23213856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729990/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2294826507568 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5675354003906 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9991302490234 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816296 SAMN23215114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729991/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7112426757812 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7768802642822 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5693035125732 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816297 SAMN23215113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729992/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3766269683838 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3242588043213 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5875225067139 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816298 SAMN23217588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729993/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1667995452881 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2478904724121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9286651611328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816299 SAMN23213855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729994/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0563297271729 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8586711883545 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9796314239502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816300 SAMN23216440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730102/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7162570953369 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9837379455566 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7661762237549 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816301 SAMN23217587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729995/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7924404144287 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4490718841553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9808540344238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816302 SAMN23213854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730103/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1792526245117 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4423141479492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4111766815186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816303 SAMN23214622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730104/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6623649597168 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8392486572266 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5812683105469 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816304 SAMN23217566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000725023/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.6156616210938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5390682220459 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1280670166016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816305 SAMN23214753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000725024/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2160129547119 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0205574035645 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8090534210205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816306 SAMN23217474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725025/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5615711212158 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5736789703369 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.301212310791 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816307 SAMN23216175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725028/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7511920928955 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0086326599121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5857257843018 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816308 SAMN23214752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000725029/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6870803833008 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6571960449219 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7285671234131 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816309 SAMN23217473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725030/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8274726867676 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.122709274292 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8067302703857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816310 SAMN23214843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000725031/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7603549957275 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7813453674316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.766529083252 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816311 SAMN23213750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WV-CDC-STM-000725032/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.756308555603 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4989891052246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7489395141602 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816312 SAMN23217654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000725033/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4414386749268 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7783126831055 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4509716033936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816313 SAMN23217754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000725037/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5963611602783 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3634357452393 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.826639175415 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816314 SAMN23214118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000725036/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.3853940963745 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.3357133865356 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.9810771942139 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816315 SAMN23217472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725035/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7836761474609 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7335052490234 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5233631134033 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816316 SAMN23214467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-000725038/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0390567779541 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.123929977417 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9924125671387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816317 SAMN23215579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725039/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.794810295105 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7773723602295 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1394329071045 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816318 SAMN23214388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-000725040/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5444374084473 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6510486602783 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1965236663818 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816319 SAMN23215578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725041/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4000873565674 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3336410522461 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8273296356201 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816320 SAMN23214354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725044/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9414081573486 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7552871704102 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7137889862061 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816321 SAMN23217784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AK-CDC-STM-000725045/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8842639923096 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6867427825928 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9145317077637 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816322 SAMN23217653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000725046/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8391094207764 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.954906463623 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7990779876709 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816323 SAMN23214568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000725047/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.805627822876 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6548137664795 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4638595581055 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816324 SAMN23214353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725048/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1019477844238 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.125919342041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7979564666748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816325 SAMN23214751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000725049/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4207191467285 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1904296875 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4591445922852 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816326 SAMN23217783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AK-CDC-STM-000725052/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7885093688965 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6275882720947 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4440174102783 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816327 SAMN23214392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OK-CDC-STM-000725053/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6191806793213 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.826473236084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4553680419922 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816328 SAMN23216174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725054/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3666973114014 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8315124511719 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6097927093506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816329 SAMN23217471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725055/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3767719268799 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3835735321045 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1184749603271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816330 SAMN23214352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725056/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6721038818359 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9935550689697 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6067867279053 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816331 SAMN23215577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725057/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9638957977295 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4391059875488 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8667736053467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816332 SAMN23215693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/HI-CDC-STM-000725060/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.993371963501 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7784194946289 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7460708618164 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816333 SAMN23214086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725061/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3242340087891 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1533660888672 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7827196121216 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816334 SAMN23217565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000725062/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1800537109375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7254543304443 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3994579315186 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816335 SAMN23215413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726977/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2508544921875 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4653491973877 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.621997833252 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816336 SAMN23214710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726978/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.521990776062 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7908153533936 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5564441680908 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816337 SAMN23217470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725063/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5249824523926 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1602344512939 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7706565856934 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816338 SAMN23214299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726979/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2068405151367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5162410736084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8186702728271 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816339 SAMN23214011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726980/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4707641601562 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7542209625244 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7797374725342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816340 SAMN23214827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000726981/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8503227233887 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3931159973145 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3200721740723 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816341 SAMN23214560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000726982/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9036483764648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7796115875244 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8109130859375 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816342 SAMN23216079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726983/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2119750976562 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3382263183594 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9988098144531 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816343 SAMN23217241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726984/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3682975769043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8779201507568 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6925888061523 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816344 SAMN23217240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726985/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7188873291016 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4858798980713 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0203952789307 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816345 SAMN23217239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726986/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0649604797363 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0892772674561 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.816915512085 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816346 SAMN23214709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726987/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.323769569397 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.462818145752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7966823577881 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816347 SAMN23217237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726989/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.545238494873 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7149791717529 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4431247711182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816348 SAMN23217238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726988/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5082683563232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.285852432251 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2230091094971 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816349 SAMN23217236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726990/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8320484161377 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8342208862305 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9418354034424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816350 SAMN23216078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726991/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5583114624023 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5659484863281 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9846801757812 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816351 SAMN23217235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726992/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7698421478271 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8502006530762 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5524196624756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816352 SAMN23217234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726993/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8109531402588 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8806343078613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6669864654541 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816353 SAMN23214391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OK-CDC-STM-000726995/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0848865509033 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1163730621338 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9813480377197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816354 SAMN23215412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727002/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4332427978516 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3288555145264 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1189422607422 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816355 SAMN23216077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726994/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1642589569092 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9764556884766 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8177604675293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816356 SAMN23217552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-000727004/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5652809143066 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7581920623779 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6807079315186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816357 SAMN23217233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727003/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1492671966553 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2347850799561 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5399589538574 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816358 SAMN23217232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727006/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8370552062988 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0238857269287 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7211456298828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816359 SAMN23214441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000727007/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 92 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8214988708496 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8250484466553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8828125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816360 SAMN23214147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PR-CDC-STM-000727008/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1605777740479 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0682277679443 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7832794189453 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816361 SAMN23217231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727009/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0221118927002 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6385822296143 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5659618377686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816362 SAMN23217727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727010/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7795906066895 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2813892364502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8547973632812 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816363 SAMN23215411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727011/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.067626953125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9344444274902 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7739353179932 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816364 SAMN23215410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727012/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7674655914307 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9513168334961 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.568244934082 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816365 SAMN23215409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727013/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4039535522461 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6740589141846 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5343971252441 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816366 SAMN23217230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727014/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7870655059814 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7499370574951 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7708873748779 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816367 SAMN23214440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000727015/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.6592845916748 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.2069139480591 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.2275314331055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816368 SAMN23215858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730209/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5102653503418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9586181640625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7288303375244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816369 SAMN23214611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730208/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.669548034668 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.022554397583 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.344446182251 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816370 SAMN23214474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000730210/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4724884033203 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5576248168945 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7761611938477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816371 SAMN23214193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730211/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7884788513184 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9020137786865 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7989292144775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816372 SAMN23214192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730212/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3890151977539 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1833763122559 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0507335662842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816373 SAMN23216419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730213/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7675399780273 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8286247253418 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1859245300293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816374 SAMN23216418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730214/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5622215270996 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7223033905029 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4021339416504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816375 SAMN23216417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730215/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7557144165039 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8660755157471 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8808975219727 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816376 SAMN23216416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730216/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7047443389893 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5731468200684 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.522481918335 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816377 SAMN23216415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730217/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6089897155762 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7352428436279 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3208103179932 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816378 SAMN23216414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730218/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7536640167236 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8273811340332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6824550628662 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816379 SAMN23214610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730219/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0957927703857 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5107898712158 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2573623657227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816380 SAMN23213845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730220/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3924789428711 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8056011199951 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1371154785156 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816381 SAMN23215095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730221/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9651355743408 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4494514465332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.908203125 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816382 SAMN23215857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730222/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4194316864014 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2158489227295 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8599910736084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816383 SAMN23214788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730223/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0358505249023 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1066989898682 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8194160461426 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816384 SAMN23215856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730224/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7337036132812 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9444332122803 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7799282073975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816385 SAMN23214191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730225/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.782829284668 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2294807434082 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.760290145874 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816386 SAMN23216413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730226/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0254917144775 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9856834411621 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.756950378418 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816387 SAMN23216486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729559/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2171268463135 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8162727355957 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5174427032471 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816388 SAMN23214455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000729560/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7976627349854 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4986324310303 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3683528900146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816389 SAMN23213767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000729561/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.816873550415 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3004016876221 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9723606109619 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816390 SAMN23215892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729562/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9779071807861 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1300888061523 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0019645690918 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816391 SAMN23217769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000729563/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3294944763184 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3581886291504 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0864181518555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816392 SAMN23214454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000729583/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9412746429443 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8377285003662 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5766124725342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816393 SAMN23214213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729564/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.912504196167 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7927875518799 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4108467102051 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816394 SAMN23214382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-000729584/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4787044525146 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7160625457764 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3729591369629 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816395 SAMN23214461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-000729585/2021 collected_by 'Helix' collection_date 2021-09-06 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0776023864746 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0377578735352 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9995861053467 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816396 SAMN23214390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OK-CDC-STM-000729586/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.566987991333 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5843372344971 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1987285614014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816397 SAMN23214954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000729587/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8018264770508 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6717300415039 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6202392578125 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816398 SAMN23216485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729588/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5022296905518 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5506267547607 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.090934753418 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816399 SAMN23214506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000729589/2021 collected_by 'Helix' collection_date 2021-09-06 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5616569519043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8063316345215 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7843360900879 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816400 SAMN23216230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731149/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0997314453125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2919483184814 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.806583404541 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816401 SAMN23214976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000731148/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3228893280029 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8952884674072 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8676929473877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816402 SAMN23215703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000731150/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2629299163818 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8371734619141 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6653156280518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816403 SAMN23216229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731151/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1965618133545 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4381046295166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8526420593262 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816404 SAMN23216228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731152/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.547815322876 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7718257904053 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5903415679932 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816405 SAMN23217764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000731153/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3700351715088 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5038890838623 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1985168457031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816406 SAMN23214975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000731154/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3689231872559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7279987335205 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4836921691895 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816407 SAMN23214974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000731155/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 39 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4004669189453 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7681941986084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8224563598633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816408 SAMN23213787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000731156/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1032447814941 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8684558868408 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7031307220459 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816409 SAMN23216227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731157/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7994766235352 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.667652130127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7850570678711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816410 SAMN23216226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731158/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7770385742188 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7810802459717 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6189441680908 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816411 SAMN23216225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731159/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.13134765625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1337394714355 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7894058227539 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816412 SAMN23214973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000731160/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9406337738037 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3894882202148 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9344692230225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816413 SAMN23214573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000731162/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4478626251221 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8120918273926 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7601108551025 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816414 SAMN23213786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000731163/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5339775085449 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4961776733398 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3814334869385 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816415 SAMN23214149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000731161/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5465965270996 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4583911895752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1920299530029 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816416 SAMN23213785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000731164/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7204647064209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6259078979492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3450584411621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816417 SAMN23213784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000731165/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4955806732178 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.3394241333008 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7154216766357 lineage/clade name AY.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816418 SAMN23214972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000731166/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1475477218628 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0176296234131 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7743511199951 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816419 SAMN23216224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731167/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Not Provided collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7081737518311 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1749076843262 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8030261993408 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816420 SAMN23217569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000731169/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7469120025635 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7185535430908 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2469348907471 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816421 SAMN23216223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731171/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2171010971069 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2575817108154 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0384654998779 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816422 SAMN23216222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731172/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4119911193848 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3025321960449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1183242797852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816423 SAMN23213783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000731170/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0743541717529 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4572887420654 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2873153686523 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816424 SAMN23216221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731173/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.893928527832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5439929962158 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0638084411621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816425 SAMN23214971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000731174/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4975204467773 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2470550537109 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.863489151001 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816426 SAMN23217661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000731180/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1346263885498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9380836486816 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9702949523926 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816427 SAMN23217660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000731181/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1519680023193 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8176574707031 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6455345153809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816428 SAMN23217659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000731182/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4951267242432 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6940364837646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2800807952881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816429 SAMN23216220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731184/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8987598419189 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5695953369141 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7231597900391 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816430 SAMN23216218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731186/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4011650085449 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3455200195312 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.188419342041 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816431 SAMN23215546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725320/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4697513580322 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1281185150146 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0174808502197 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816432 SAMN23216159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725321/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2300758361816 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8117771148682 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1417655944824 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816433 SAMN23216219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731185/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3179893493652 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4014739990234 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0979557037354 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816434 SAMN23215545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725322/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2008085250854 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8567361831665 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.8027467727661 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816435 SAMN23217436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725323/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9404964447021 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6980857849121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.760705947876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816436 SAMN23216158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725324/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0521221160889 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.048900604248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8001747131348 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816437 SAMN23217435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725325/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4019680023193 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0409812927246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7483711242676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816438 SAMN23215544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725326/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.541862487793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5712413787842 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3284549713135 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816439 SAMN23215543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725328/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8109664916992 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.8469371795654 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.8293085098267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816440 SAMN23214838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000725327/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5342826843262 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5863571166992 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3683032989502 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816441 SAMN23215542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725329/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3689937591553 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7878265380859 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8163375854492 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816442 SAMN23215540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725331/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2560901641846 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0198745727539 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7874889373779 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816443 SAMN23215541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725330/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9939250946045 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1199703216553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8642997741699 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816444 SAMN23215539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725332/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0984573364258 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3730049133301 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5859870910645 lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816445 SAMN23214516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000725334/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2130393981934 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2707767486572 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2241897583008 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816446 SAMN23217434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725333/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.130199432373 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1740570068359 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9207324981689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816447 SAMN23217433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725335/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7178535461426 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8755970001221 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7976856231689 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816448 SAMN23214070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725336/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.897554397583 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5413970947266 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1753807067871 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816449 SAMN23217432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725337/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3847751617432 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3349342346191 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5068225860596 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816450 SAMN23214747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000725338/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6923637390137 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5951709747314 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3641948699951 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816451 SAMN23214346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725339/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0017099380493 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8034372329712 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0267086029053 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816452 SAMN23215538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725340/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1994018554688 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.920036315918 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0701484680176 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816453 SAMN23217431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725341/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.49680519104 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0675411224365 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7875270843506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816454 SAMN23214837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000725342/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3906288146973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0537929534912 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2889881134033 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816455 SAMN23214069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725344/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4426651000977 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.016170501709 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.435302734375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816456 SAMN23217430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725343/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3120670318604 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4687671661377 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9322147369385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816457 SAMN23215536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725346/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1379814147949 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8247051239014 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7764549255371 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816458 SAMN23215535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725347/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9673509597778 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.765811920166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5385990142822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816459 SAMN23217429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725349/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4460926055908 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3853588104248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2051391601562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816460 SAMN23215537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725345/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3302822113037 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1385974884033 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4412975311279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816461 SAMN23216157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725350/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4600601196289 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.574089050293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3208808898926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816462 SAMN23216156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725351/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8383522033691 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7487144470215 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6264114379883 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816463 SAMN23214068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725352/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2010440826416 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5992870330811 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0185089111328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816464 SAMN23215354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727735/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7641448974609 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6325168609619 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2896423339844 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816465 SAMN23217159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727737/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.1348505020142 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.1494741439819 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.6790008544922 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816466 SAMN23214932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000727738/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7301607131958 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4877262115479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.521951675415 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816467 SAMN23216030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727741/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8635730743408 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6964778900146 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2175617218018 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816468 SAMN23217620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000727740/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.826997756958 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7165851593018 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1671600341797 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816469 SAMN23217777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000727742/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2312850952148 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4244556427002 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2232761383057 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816470 SAMN23217158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727739/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8168163299561 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.576244354248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.60498046875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816471 SAMN23214771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000727743/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9706211090088 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.257137298584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9644985198975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816472 SAMN23217157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727744/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6041831970215 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7624702453613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5950794219971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816473 SAMN23216029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727746/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.780933380127 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7546653747559 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4097690582275 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816474 SAMN23214272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727747/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5076160430908 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2242641448975 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2113094329834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816475 SAMN23217156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727745/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4995403289795 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.009973526001 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6830730438232 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816476 SAMN23217155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727748/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.978479385376 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9503440856934 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6499252319336 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816477 SAMN23213778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000727749/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.361946105957 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1435165405273 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0098514556885 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816478 SAMN23217154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727750/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8093032836914 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0164985656738 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7245426177979 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816479 SAMN23213985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727751/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7549018859863 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8108978271484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5142631530762 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816480 SAMN23214271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727752/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.717321395874 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3475017547607 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2026348114014 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816481 SAMN23215353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727755/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7872943878174 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8094024658203 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6570625305176 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816482 SAMN23214270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727753/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0778675079346 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8368072509766 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7165336608887 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816483 SAMN23217153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727756/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8339061737061 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8256301879883 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7900810241699 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816484 SAMN23215352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727757/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.486608505249 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2153282165527 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7261714935303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816485 SAMN23215351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727758/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7451057434082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.5619621276855 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3565216064453 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816486 SAMN23217152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727759/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5192813873291 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4401397705078 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3609828948975 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816487 SAMN23215350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727760/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4262790679932 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.04856300354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8203239440918 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816488 SAMN23214269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727761/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7310161590576 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6025619506836 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0089111328125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816489 SAMN23215349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727762/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8351936340332 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9158535003662 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.803861618042 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816490 SAMN23214499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/ND-CDC-STM-000727764/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3792381286621 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2788581848145 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5269184112549 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816491 SAMN23213984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727763/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7690811157227 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4479522705078 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4638862609863 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816492 SAMN23215347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727766/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1081314086914 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1335754394531 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1448860168457 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816493 SAMN23215348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727765/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6849536895752 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4461727142334 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3437023162842 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816494 SAMN23217151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727767/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8115558624268 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.250560760498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9903717041016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816495 SAMN23217150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727768/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6682376861572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7679195404053 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5456790924072 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816496 SAMN23216366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730414/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.784912109375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9827632904053 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6683177947998 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816497 SAMN23215054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730413/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5630493164062 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7133483886719 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.8779497146606 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816498 SAMN23214404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000730412/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.336841583252 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2586917877197 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1264038085938 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816499 SAMN23216365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730415/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3879928588867 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5633087158203 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2294273376465 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816500 SAMN23215838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730416/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3509092330933 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.007999420166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7639627456665 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816501 SAMN23214851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000730417/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6380443572998 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7595291137695 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5219345092773 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816502 SAMN23215837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730418/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4342555999756 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1540908813477 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7665996551514 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816503 SAMN23214179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730419/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2372570037842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8926219940186 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8216438293457 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816504 SAMN23215835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730421/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5529022216797 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3025035858154 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0775146484375 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816505 SAMN23215836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730420/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3224754333496 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5000801086426 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9461402893066 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816506 SAMN23214600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730422/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7780666351318 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8129348754883 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4311981201172 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816507 SAMN23215053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730423/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6782207489014 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7582302093506 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.408031463623 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816508 SAMN23214967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KS-CDC-STM-000730425/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4869556427002 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1767826080322 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7974147796631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816509 SAMN23214124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000730424/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9572124481201 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8457469940186 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.508975982666 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816510 SAMN23215834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730428/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1236381530762 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0561466217041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7549610137939 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816511 SAMN23214451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000730426/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.79079246521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3063144683838 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8218002319336 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816512 SAMN23215052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730429/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.942892074585 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8312740325928 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7062015533447 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816513 SAMN23216364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730430/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2165756225586 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3288745880127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.074535369873 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816514 SAMN23214178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730432/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4649810791016 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.516695022583 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2039947509766 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816515 SAMN23215833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730433/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3761043548584 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1001892089844 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6920490264893 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816516 SAMN23215051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730431/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.4858169555664 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.23610496521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.9735336303711 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816517 SAMN23215050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730435/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7284851074219 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3157997131348 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2593212127686 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816518 SAMN23216363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730434/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9695796966553 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2386169433594 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9494705200195 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816519 SAMN23214472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000730436/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7079925537109 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7599830627441 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2961730957031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816520 SAMN23214460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-000730437/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7249317169189 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3186931610107 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1856479644775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816521 SAMN23214123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000730438/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7120895385742 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7685413360596 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2823867797852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816522 SAMN23213764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000730439/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1457595825195 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5672245025635 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1118927001953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816523 SAMN23215049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730441/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5167121887207 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6591548919678 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.285400390625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816524 SAMN23216361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730442/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4361877441406 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8908557891846 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.659387588501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816525 SAMN23215832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730443/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8584995269775 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7940292358398 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.570384979248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816526 SAMN23216362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730440/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8233318328857 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7973766326904 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4393749237061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816527 SAMN23217409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726031/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4802207946777 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5274829864502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1273517608643 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816528 SAMN23214059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726032/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8229637145996 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7559947967529 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4795455932617 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816529 SAMN23214784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730444/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5119304656982 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.348014831543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1611576080322 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816530 SAMN23216144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726033/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1345252990723 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9457683563232 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8094520568848 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816531 SAMN23217408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726034/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5645885467529 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7699584960938 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2838535308838 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816532 SAMN23215682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726036/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6652507781982 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7968101501465 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4025020599365 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816533 SAMN23214058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726038/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5832405090332 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1085681915283 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4600486755371 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816534 SAMN23217407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726035/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2331600189209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2521953582764 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6907653808594 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816535 SAMN23215526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726037/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6886386871338 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8161010742188 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4827861785889 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816536 SAMN23216143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726039/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.874979019165 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5846138000488 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5318241119385 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816537 SAMN23214057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726040/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8073301315308 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.9179449081421 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.7886734008789 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816538 SAMN23214343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726041/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3491134643555 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3766784667969 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9748859405518 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816539 SAMN23217646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726042/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4665203094482 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4951477050781 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0295848846436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816540 SAMN23217406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726045/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.65500831604 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0183715820312 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6060562133789 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816541 SAMN23214740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726044/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0695953369141 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6234226226807 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3830070495605 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816542 SAMN23217405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726046/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4365367889404 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2827568054199 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1609802246094 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816543 SAMN23217781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000726043/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1288757324219 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0058612823486 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8268394470215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816544 SAMN23214342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726047/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2063980102539 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.14866065979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0589084625244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816545 SAMN23217404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726048/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3223400115967 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0222301483154 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0598659515381 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816546 SAMN23216142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726050/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7494602203369 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.817777633667 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1584644317627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816547 SAMN23214341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726052/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5437116622925 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3855934143066 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0249061584473 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816548 SAMN23217403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726049/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5888366699219 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8323554992676 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5857944488525 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816549 SAMN23217402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726051/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7926979064941 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6609077453613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0437049865723 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816550 SAMN23217401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726053/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7212772369385 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5744762420654 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4938526153564 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816551 SAMN23215681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726054/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6017265319824 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4804782867432 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2239265441895 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816552 SAMN23217400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726055/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.568962097168 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1998519897461 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7363357543945 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816553 SAMN23217399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726057/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4902114868164 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4292774200439 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0646476745605 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816554 SAMN23215525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726056/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7981567382812 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1799354553223 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0144920349121 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816555 SAMN23216140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726059/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1183986663818 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.968994140625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6713027954102 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816556 SAMN23214836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000726060/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7625331878662 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7343082427979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1209201812744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816557 SAMN23216141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726058/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0937986373901 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8258018493652 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.8045854568481 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816558 SAMN23214340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726061/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8086585998535 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7677211761475 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7125930786133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816559 SAMN23217398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726062/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.4312400817871 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.1293334960938 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.8688621520996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816560 SAMN23215819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730550/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7731781005859 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1059436798096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7890968322754 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816561 SAMN23217672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730551/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8010120391846 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9405574798584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7187042236328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816562 SAMN23214594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730552/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1364059448242 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9415168762207 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7130756378174 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816563 SAMN23213813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730555/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6464462280273 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6953525543213 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6359519958496 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816564 SAMN23216333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730556/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5370349884033 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4699440002441 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3152198791504 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816565 SAMN23214782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730557/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8853645324707 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8189353942871 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8285331726074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816566 SAMN23214122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000730554/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8787631988525 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4694538116455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5199069976807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816567 SAMN23216332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730559/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0935440063477 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.926176071167 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8247165679932 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816568 SAMN23214593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730558/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5795001983643 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4510383605957 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8385200500488 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816569 SAMN23217671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730560/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3245429992676 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3486194610596 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9485549926758 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816570 SAMN23214432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000730561/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0067939758301 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1015129089355 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9867553710938 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816571 SAMN23216331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730563/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3001956939697 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.737268447876 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4708232879639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816572 SAMN23216330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730564/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6745662689209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6154537200928 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.255615234375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816573 SAMN23213812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730562/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.629656791687 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.6356897354126 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.3922472000122 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816574 SAMN23215818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730565/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8358974456787 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1585540771484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8047962188721 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816575 SAMN23214431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000730566/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8981380462646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7451915740967 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3573551177979 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816576 SAMN23214592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730567/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.3782424926758 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.3674144744873 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.9804601669312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816577 SAMN23213774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000730569/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4342823028564 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3348369598389 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0144100189209 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816578 SAMN23217576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730568/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6453914642334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0080165863037 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7093200683594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816579 SAMN23216329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730570/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2844104766846 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2739143371582 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2054576873779 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816580 SAMN23216328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730571/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0075168609619 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7541961669922 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7214584350586 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816581 SAMN23214591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730573/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5103397369385 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0844669342041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7202301025391 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816582 SAMN23216326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730574/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7832870483398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.365255355835 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9889278411865 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816583 SAMN23216327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730572/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1096363067627 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2038898468018 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9845352172852 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816584 SAMN23213811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730577/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2888374328613 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2465000152588 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9524517059326 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816585 SAMN23217670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730575/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8381805419922 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8144588470459 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6825828552246 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816586 SAMN23215817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730576/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.658899307251 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6723289489746 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2879600524902 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816587 SAMN23215816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730578/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2613124847412 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2572746276855 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8318748474121 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816588 SAMN23217557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CT-CDC-STM-000730579/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6145687103271 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4406852722168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8428134918213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816589 SAMN23215815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730580/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7569103240967 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3449954986572 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2755489349365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816590 SAMN23216324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730582/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7276477813721 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8257427215576 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7205181121826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816591 SAMN23216325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730581/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4085922241211 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2624244689941 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1100101470947 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816592 SAMN23215913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729393/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8143138885498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5867404937744 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.644983291626 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816593 SAMN23214640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729392/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1229839324951 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2364521026611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7314281463623 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816594 SAMN23215173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729394/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5326995849609 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2563629150391 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8364658355713 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816595 SAMN23216537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729395/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.503812789917 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.1468868255615 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8536586761475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816596 SAMN23216535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729404/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.455451965332 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.9115867614746 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.7684669494629 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816597 SAMN23216534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729405/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.4032249450684 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.6749877929688 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.443323135376 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816598 SAMN23216536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729403/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.492883682251 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7513160705566 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.2577648162842 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816599 SAMN23216533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729406/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.8164958953857 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.8443202972412 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.9113273620605 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816600 SAMN23214639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729408/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.4155120849609 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.4831962585449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.765941619873 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816601 SAMN23215172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729407/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.9296092987061 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.2032985687256 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.325403213501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816602 SAMN23213889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729410/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0106735229492 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.1547966003418 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.0600318908691 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816603 SAMN23214476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000729409/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.7564315795898 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.703067779541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.0954608917236 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816604 SAMN23215171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729411/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.2032032012939 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.2280445098877 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.8066844940186 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816605 SAMN23215170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729412/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.5110740661621 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.2630405426025 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.7187728881836 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816606 SAMN23215169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729413/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.1966800689697 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.9107971191406 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.4878692626953 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816607 SAMN23215168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729415/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0911331176758 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.8118858337402 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.6566963195801 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816608 SAMN23216532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729416/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.4527912139893 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.1617622375488 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.907039642334 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816609 SAMN23216531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729417/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.8521480560303 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7424201965332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.838098526001 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816610 SAMN23214955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000729419/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.7449340820312 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.9076080322266 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.8401355743408 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816611 SAMN23214221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729420/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.4112892150879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.5576686859131 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.7968521118164 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816612 SAMN23216530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729421/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.2545318603516 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.6576080322266 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.0561580657959 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816613 SAMN23216529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729422/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.958833694458 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.5797252655029 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.0002841949463 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816614 SAMN23215167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729423/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.7454872131348 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.1253433227539 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.4962291717529 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816615 SAMN23217596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729424/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.5181770324707 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.4345169067383 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.7386283874512 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816616 SAMN23216528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729425/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.378246307373 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.6800079345703 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.80885887146 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816617 SAMN23215166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729426/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0234775543213 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.8848667144775 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.2154235839844 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816618 SAMN23215165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729427/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.1022720336914 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.281795501709 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.7601375579834 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816619 SAMN23213888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729428/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.3788166046143 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.3838844299316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.7827339172363 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816620 SAMN23213768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000729430/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.4122695922852 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.1896533966064 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.7481288909912 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816621 SAMN23215164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729431/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.2548084259033 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.1257991790771 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.5542392730713 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816622 SAMN23216527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729432/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.5876541137695 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 32.1568946838379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 31.2908458709717 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816623 SAMN23215163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729433/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.8481025695801 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.8581657409668 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 31.1751956939697 lineage/clade name AY.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816624 SAMN23216514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729472/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.5071353912354 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 32.2613716125488 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.8120498657227 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816625 SAMN23214219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729467/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.8430881500244 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.76393699646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.1782722473145 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816626 SAMN23213887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729470/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.0454254150391 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.0172424316406 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.9548969268799 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816627 SAMN23217594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729473/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.7727336883545 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.9729156494141 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.7151622772217 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816628 SAMN23213886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729474/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0792407989502 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.349515914917 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.0262584686279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816629 SAMN23213885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729475/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.2671699523926 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.217399597168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.7959785461426 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816630 SAMN23217692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729476/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.4070339202881 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.8826637268066 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.6202354431152 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816631 SAMN23214861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000729478/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.6627311706543 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.5561866760254 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.9923362731934 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816632 SAMN23217691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729477/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.6611442565918 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.678991317749 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.3578186035156 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816633 SAMN23216513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729479/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0554599761963 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7506771087646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.3262462615967 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816634 SAMN23214218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729480/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.3513622283936 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.2549095153809 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.2867889404297 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816635 SAMN23215902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729481/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.6921768188477 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.9373798370361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.6858081817627 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816636 SAMN23215158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729482/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.6027584075928 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7287254333496 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.9329700469971 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816637 SAMN23215157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729483/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.8282508850098 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 32.30322265625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 31.1069469451904 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816638 SAMN23215156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729484/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.7454929351807 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7477397918701 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.3735847473145 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816639 SAMN23214520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000729486/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.5784225463867 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.9888191223145 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.4969787597656 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816640 SAMN23216512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729485/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.4655513763428 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 32.3623924255371 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 31.2092323303223 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816641 SAMN23216511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729487/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.8020572662354 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.2120227813721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.7994480133057 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816642 SAMN23216510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729489/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.6588554382324 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 32.6476287841797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 31.4953575134277 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816643 SAMN23215155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729488/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.7457695007324 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 32.0860023498535 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.7615013122559 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816644 SAMN23215154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729490/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.1749515533447 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.661771774292 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.081579208374 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816645 SAMN23214636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729491/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.9924755096436 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 32.9285316467285 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 31.4633083343506 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816646 SAMN23214217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729492/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.1457042694092 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.3376445770264 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.3829154968262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816647 SAMN23215901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729493/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.7522125244141 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.5589618682861 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.3080043792725 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816648 SAMN23216509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729494/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.8464508056641 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.2460994720459 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.6485252380371 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816649 SAMN23214635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729495/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.4534091949463 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.2905044555664 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.7341251373291 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816650 SAMN23215153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729503/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8604412078857 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0155906677246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7977066040039 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816651 SAMN23215900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729502/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8192005157471 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0292339324951 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6039257049561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816652 SAMN23216508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729504/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7496538162231 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6391086578369 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4409122467041 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816653 SAMN23216507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729505/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8360004425049 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6539669036865 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1773529052734 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816654 SAMN23216506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729506/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2424011230469 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2891845703125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8089141845703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816655 SAMN23217572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730685/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6243839263916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6759700775146 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3636169433594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816656 SAMN23214216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729507/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9021377563477 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.104585647583 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9508590698242 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816657 SAMN23214450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000730686/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1708850860596 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8018989562988 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7100124359131 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816658 SAMN23216294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730687/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5240879058838 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0987606048584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7681312561035 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816659 SAMN23214121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000730688/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.836145401001 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2396850585938 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9483489990234 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816660 SAMN23215023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730689/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6986885070801 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4598579406738 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3962535858154 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816661 SAMN23215736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730690/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5102214813232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2558879852295 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9462261199951 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816662 SAMN23215735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730691/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3259201049805 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5092754364014 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0232772827148 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816663 SAMN23215734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730692/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6528358459473 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.4717140197754 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7822113037109 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816664 SAMN23215022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730693/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4767169952393 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0311813354492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6511001586914 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816665 SAMN23216293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730695/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4968795776367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7465114593506 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1609420776367 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816666 SAMN23213805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730694/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8024501800537 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0983333587646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0465450286865 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816667 SAMN23214848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000730702/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7965459823608 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7057647705078 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3885593414307 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816668 SAMN23214583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730703/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.398962020874 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7615699768066 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5776538848877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816669 SAMN23215021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730704/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7980289459229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.3520698547363 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9382228851318 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816670 SAMN23216292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730705/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8622016906738 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0932445526123 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6809711456299 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816671 SAMN23214449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000730706/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5898609161377 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7575206756592 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3974475860596 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816672 SAMN23216291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730707/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5523643493652 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1596088409424 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9299926757812 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816673 SAMN23216290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730708/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0365047454834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.581958770752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4835815429688 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816674 SAMN23215020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730709/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2902126312256 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2073993682861 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7993469238281 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816675 SAMN23215019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730710/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1669692993164 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2126884460449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6479206085205 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816676 SAMN23215018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730711/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5743885040283 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5619297027588 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1677989959717 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816677 SAMN23213804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730712/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9648933410645 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5046787261963 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.160795211792 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816678 SAMN23215733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730713/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8212509155273 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7928047180176 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4285202026367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816679 SAMN23213803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730714/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0860900878906 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7780704498291 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2879886627197 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816680 SAMN23214167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730715/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.01877784729 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8699607849121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7099857330322 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816681 SAMN23215732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730716/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 11 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5657863616943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4953670501709 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1194000244141 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816682 SAMN23213802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730717/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8250045776367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.372444152832 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1735305786133 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816683 SAMN23215017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730718/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4465274810791 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0970478057861 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9191150665283 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816684 SAMN23214166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730719/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7875156402588 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1766738891602 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8211040496826 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816685 SAMN23216289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730720/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.786153793335 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8539142608643 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.717752456665 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816686 SAMN23214582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730721/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6243324279785 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3546600341797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7727355957031 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816687 SAMN23215016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730722/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0415534973145 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6730480194092 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4607849121094 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816688 SAMN23217358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726415/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7132396697998 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7444972991943 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9966144561768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816689 SAMN23217357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726416/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1892070770264 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4397964477539 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9791870117188 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816690 SAMN23214730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726417/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5372085571289 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0860061645508 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.763521194458 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816691 SAMN23214327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726418/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7898254394531 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6282863616943 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4095649719238 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816692 SAMN23214049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726420/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2443523406982 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3344192504883 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8734645843506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816693 SAMN23216126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726419/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5969257354736 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7161998748779 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.563045501709 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816694 SAMN23217356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726421/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.287281036377 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4032783508301 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0037612915039 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816695 SAMN23217745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726422/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8698692321777 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9762287139893 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7140808105469 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816696 SAMN23217355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726423/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3374176025391 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7748775482178 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5758838653564 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816697 SAMN23217354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726424/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6099109649658 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3050842285156 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3265933990479 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816698 SAMN23214048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726425/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1120014190674 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0545291900635 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.702953338623 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816699 SAMN23217353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726426/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1287479400635 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3399143218994 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7952747344971 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816700 SAMN23217352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726427/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7947101593018 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8692150115967 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.2163467407227 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816701 SAMN23217351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726428/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1606254577637 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8263034820557 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4274005889893 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816702 SAMN23216125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726429/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1786632537842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4230690002441 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9777183532715 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816703 SAMN23214047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726430/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4115371704102 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4218063354492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.37965965271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816704 SAMN23214046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726431/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7828979492188 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.7388782501221 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.3608303070068 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816705 SAMN23214045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726432/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7052059173584 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8108139038086 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6727924346924 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816706 SAMN23217350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726434/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9193248748779 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.911376953125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7503223419189 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816707 SAMN23214044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726433/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7191619873047 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8282775878906 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4573516845703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816708 SAMN23217349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726435/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3018016815186 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4984683990479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0237083435059 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816709 SAMN23217348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726436/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.242467880249 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.93186378479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.830753326416 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816710 SAMN23216124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726437/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8181419372559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1366539001465 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.60085105896 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816711 SAMN23217347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726438/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5398540496826 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8444480895996 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.65891456604 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816712 SAMN23216123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726439/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8459072113037 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0219802856445 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5762462615967 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816713 SAMN23217345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726441/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6286754608154 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.498743057251 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1882038116455 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816714 SAMN23217346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726440/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7495803833008 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9461669921875 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6693420410156 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816715 SAMN23217343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726443/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4422130584717 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0182151794434 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5869178771973 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816716 SAMN23217344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726442/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0089740753174 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.735782623291 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2474842071533 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816717 SAMN23217342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726445/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7052726745605 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5369129180908 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2142658233643 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816718 SAMN23214043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726444/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8959674835205 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1329765319824 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1727619171143 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816719 SAMN23216122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726446/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.462760925293 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2190761566162 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7733192443848 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816720 SAMN23216752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728090/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1131782531738 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1497211456299 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8344287872314 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816721 SAMN23214556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000728091/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4334774017334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.6395740509033 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.3856925964355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816722 SAMN23216751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728093/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.840389251709 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7637672424316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7914180755615 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816723 SAMN23216007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728092/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0173511505127 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5713348388672 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9044322967529 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816724 SAMN23216750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728094/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7844066619873 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.8325519561768 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.6136865615845 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816725 SAMN23214132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000728095/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5916404724121 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3588199615479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3449935913086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816726 SAMN23214931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728109/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3974666595459 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.082950592041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8172931671143 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816727 SAMN23214930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728115/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2674140930176 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2129726409912 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0569839477539 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816728 SAMN23214929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728117/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6420135498047 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6947231292725 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5096702575684 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816729 SAMN23214928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728142/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 25.6379947662354 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.2025508880615 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7785263061523 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816730 SAMN23214927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728147/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7969875335693 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6120376586914 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6041393280029 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816731 SAMN23214926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728156/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8136463165283 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8334102630615 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5414085388184 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816732 SAMN23214924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728165/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.221715927124 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6080055236816 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1172046661377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816733 SAMN23214923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728166/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4732704162598 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1730537414551 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.941219329834 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816734 SAMN23214925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728157/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4455490112305 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8961753845215 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5253486633301 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816735 SAMN23214922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728168/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4601001739502 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8065795898438 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7050800323486 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816736 SAMN23214921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728191/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6837635040283 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4794025421143 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3953132629395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816737 SAMN23214920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728211/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7819538116455 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5829029083252 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0889434814453 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816738 SAMN23214919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728213/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5091609954834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4963665008545 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3790397644043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816739 SAMN23214918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728216/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4271869659424 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8309154510498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6129837036133 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816740 SAMN23214917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728222/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0823669433594 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3172149658203 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1272583007812 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816741 SAMN23214916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728225/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 25.7769680023193 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.7868576049805 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.7204360961914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816742 SAMN23214915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728226/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.414644241333 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1087741851807 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8376350402832 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816743 SAMN23214914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728228/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1534576416016 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.943286895752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7905864715576 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816744 SAMN23214913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728235/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8300876617432 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9673938751221 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8069839477539 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816745 SAMN23214912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728260/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8347797393799 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7657737731934 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5612335205078 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816746 SAMN23214911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728263/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6075077056885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4270648956299 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3849430084229 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816747 SAMN23214910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728264/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8344039916992 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.5179615020752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5875759124756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816748 SAMN23214908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728266/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8344078063965 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7526359558105 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6360702514648 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816749 SAMN23214909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728265/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9325923919678 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6513423919678 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1393814086914 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816750 SAMN23214907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728267/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6784286499023 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5953578948975 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3131999969482 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816751 SAMN23214906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728269/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 25.9799785614014 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.8953456878662 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.2686748504639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816752 SAMN23214999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730787/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8210678100586 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7612609863281 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6056022644043 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816753 SAMN23214156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730788/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4088363647461 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1484336853027 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9759693145752 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816754 SAMN23215724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730790/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.437650680542 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6848678588867 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1561946868896 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816755 SAMN23214580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730789/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5039730072021 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8347644805908 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7140979766846 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816756 SAMN23215723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730791/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6717338562012 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7868728637695 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4576396942139 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816757 SAMN23216270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730792/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8761539459229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9974136352539 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7989063262939 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816758 SAMN23216269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730794/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7933559417725 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3481407165527 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5467090606689 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816759 SAMN23215722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730793/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7577686309814 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8715877532959 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6700477600098 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816760 SAMN23214998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730795/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5417747497559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2640991210938 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.91921043396 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816761 SAMN23215721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730803/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9635143280029 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9393062591553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7268371582031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816762 SAMN23214579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730802/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.59645652771 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7486820220947 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.4085130691528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816763 SAMN23216268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730805/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9627418518066 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7241039276123 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9684753417969 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816764 SAMN23214997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730804/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8057823181152 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2756175994873 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8508262634277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816765 SAMN23215720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730806/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.06467628479 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3563709259033 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0366096496582 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816766 SAMN23214996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730808/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7991905212402 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9677829742432 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6708850860596 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816767 SAMN23216267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730807/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6287784576416 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4651184082031 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1827125549316 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816768 SAMN23216266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730809/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5314655303955 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.84326171875 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7889461517334 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816769 SAMN23215719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730812/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6016387939453 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4668312072754 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3083457946777 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816770 SAMN23215718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730813/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.256441116333 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4521484375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8457546234131 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816771 SAMN23216265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730810/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0744819641113 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9833908081055 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1595115661621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816772 SAMN23214155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730814/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3665714263916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7486171722412 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6425609588623 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816773 SAMN23215717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730815/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3535041809082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0823993682861 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8050308227539 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816774 SAMN23214995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730816/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4913444519043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6331634521484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1734275817871 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816775 SAMN23214578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730817/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7271099090576 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9758262634277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6420421600342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816776 SAMN23214994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730819/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5563850402832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0772933959961 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9848899841309 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816777 SAMN23215716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730818/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9392700195312 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.790828704834 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2606830596924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816778 SAMN23215715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730821/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7924728393555 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.903491973877 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8285598754883 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816779 SAMN23213797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730820/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5686264038086 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.274829864502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2325668334961 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816780 SAMN23215714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730822/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6041202545166 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7257690429688 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5712299346924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816781 SAMN23217571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730823/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.450891494751 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4052581787109 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1665058135986 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816782 SAMN23217667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730824/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4732131958008 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1617832183838 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0068798065186 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816783 SAMN23214317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726583/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.011137008667 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.830451965332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8395862579346 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816784 SAMN23217666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730825/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1531448364258 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8075904846191 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.381368637085 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816785 SAMN23214316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726584/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8707504272461 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9478664398193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6882858276367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816786 SAMN23215676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726585/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.474157333374 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4477787017822 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2990226745605 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816787 SAMN23214315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726586/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5400218963623 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6050662994385 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5189247131348 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816788 SAMN23215465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726588/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7667865753174 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.8026361465454 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.7776498794556 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816789 SAMN23217320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726587/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4874229431152 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5279884338379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5073509216309 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816790 SAMN23214563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000726591/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8834915161133 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1830425262451 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8412532806396 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816791 SAMN23214314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726593/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9741497039795 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8995971679688 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7674789428711 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816792 SAMN23217319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726594/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7799396514893 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2993030548096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9467868804932 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816793 SAMN23215675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726595/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6503582000732 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7839393615723 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7251148223877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816794 SAMN23217637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726605/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9820785522461 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8852005004883 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.827449798584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816795 SAMN23214034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726603/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.1804628372192 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.1029510498047 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.8578205108643 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816796 SAMN23216106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726602/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0143280029297 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8819904327393 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8350944519043 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816797 SAMN23215464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726606/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7897863388062 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7829313278198 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3401460647583 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816798 SAMN23214033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726607/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5953884124756 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7986660003662 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3710422515869 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816799 SAMN23217636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726608/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1982116699219 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9346885681152 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7646045684814 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816800 SAMN23217318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726609/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5193309783936 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5848407745361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4974498748779 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816801 SAMN23214032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726611/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4032688140869 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4929962158203 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1761608123779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816802 SAMN23215463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726610/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4909687042236 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.094331741333 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0202732086182 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816803 SAMN23214313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726612/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8803672790527 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7075729370117 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.9139175415039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816804 SAMN23217635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726615/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9243431091309 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9750957489014 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8085079193115 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816805 SAMN23215674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726613/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9784755706787 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2585525512695 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.418212890625 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816806 SAMN23215462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726617/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7643356323242 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7016792297363 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6772270202637 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816807 SAMN23217317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726616/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7762889862061 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7773742675781 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.627721786499 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816808 SAMN23217316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726618/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0019550323486 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7957420349121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8053607940674 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816809 SAMN23217315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726619/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2250366210938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9056758880615 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8362903594971 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816810 SAMN23214312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726621/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8209648132324 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2507171630859 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.815465927124 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816811 SAMN23217314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726622/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.270133972168 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1927738189697 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9118957519531 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816812 SAMN23217313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726624/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3782863616943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0264320373535 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.710428237915 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816813 SAMN23217741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726623/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9557342529297 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8930950164795 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5251045227051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816814 SAMN23215461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726625/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7897863388062 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7829313278198 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3401460647583 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816815 SAMN23214311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726626/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.758825302124 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3686275482178 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8619213104248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816816 SAMN23214505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000729590/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7530307769775 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2639102935791 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9209365844727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816817 SAMN23214128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000729591/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7554244995117 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7645950317383 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9431076049805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816818 SAMN23214524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MO-CDC-STM-000729592/2021 collected_by 'Helix' collection_date 2021-09-06 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9248237609863 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0806732177734 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7352256774902 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816819 SAMN23213775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000729593/2021 collected_by 'Helix' collection_date 2021-09-06 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1814231872559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.969762802124 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8452777862549 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816820 SAMN23214504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000729594/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9750938415527 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.777322769165 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5601997375488 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816821 SAMN23214860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000729595/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7138977050781 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6947765350342 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3838291168213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816822 SAMN23214859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000729656/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0928821563721 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7687797546387 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6642799377441 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816823 SAMN23214858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000729658/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 25.8382511138916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.42356300354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.3830413818359 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816824 SAMN23214857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000729663/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1990394592285 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7050609588623 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0981216430664 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816825 SAMN23214856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000729667/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4879989624023 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7971477508545 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4830760955811 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816826 SAMN23216484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729664/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8953380584717 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8128299713135 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6580867767334 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816827 SAMN23214855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000729668/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.394323348999 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9883003234863 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4968852996826 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816828 SAMN23217685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729674/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8191051483154 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8077239990234 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2379131317139 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816829 SAMN23214854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000729678/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0323333740234 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7682037353516 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5978927612305 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816830 SAMN23214853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000729680/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5763511657715 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4728527069092 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.363525390625 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816831 SAMN23214852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000729695/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7805614471436 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.06032371521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.788743019104 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816832 SAMN23217592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729793/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2827243804932 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6724376678467 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2163982391357 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816833 SAMN23216483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729802/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5873603820801 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.449499130249 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1597900390625 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816835 SAMN23214545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000729804/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7471132278442 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1877918243408 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8211784362793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816836 SAMN23216482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729805/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6434555053711 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5765857696533 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8866901397705 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816837 SAMN23215891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729807/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8552780151367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9195976257324 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5587215423584 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816838 SAMN23214410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000729806/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4291725158691 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6520576477051 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3727531433105 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816839 SAMN23216481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729808/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7813205718994 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.019510269165 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7374057769775 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816840 SAMN23215890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729809/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9190559387207 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9190273284912 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8583984375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816841 SAMN23215889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729810/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7583160400391 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9278221130371 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7743625640869 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816842 SAMN23216480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729811/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5510730743408 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4109535217285 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7832717895508 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816843 SAMN23215147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729813/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.412670135498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.320650100708 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6738548278809 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816834 SAMN23214792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729803/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5713024139404 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2878837585449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2233791351318 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816844 SAMN23215148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729812/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8588705062866 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7936725616455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0646057128906 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816845 SAMN23214212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729814/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.4991416931152 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.6838178634644 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.2866182327271 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816846 SAMN23217550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-000729815/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1836585998535 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8651790618896 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.781909942627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816847 SAMN23214475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000729816/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4220371246338 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1993217468262 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3072528839111 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816848 SAMN23215288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728626/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9445667266846 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0348167419434 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8070068359375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816849 SAMN23215287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728627/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7407474517822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4701519012451 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1507415771484 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816850 SAMN23216736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728628/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8409023284912 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7303218841553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5600147247314 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816851 SAMN23215286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728630/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5540332794189 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6971282958984 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.28053855896 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816852 SAMN23216000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728629/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7461700439453 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9664916992188 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7321853637695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816853 SAMN23215285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728631/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0060596466064 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1566848754883 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8144340515137 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816854 SAMN23216735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728633/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8967304229736 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6818199157715 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4520053863525 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816855 SAMN23215284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728634/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5296249389648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2867221832275 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0401973724365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816856 SAMN23214262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728632/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3253879547119 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4078350067139 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0649719238281 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816857 SAMN23216734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728635/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3526706695557 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2580242156982 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6838493347168 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816858 SAMN23215283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728636/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7830848693848 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4080390930176 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7379913330078 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816859 SAMN23215999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728638/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6730613708496 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7952003479004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4717102050781 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816860 SAMN23215282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728640/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6520690917969 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5779609680176 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4051895141602 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816861 SAMN23214680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728639/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7694721221924 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3045749664307 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8388843536377 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816862 SAMN23216733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728641/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3010272979736 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3515129089355 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8525390625 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816863 SAMN23215281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728642/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9004669189453 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2120475769043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9209880828857 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816864 SAMN23215998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728643/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2277088165283 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0210781097412 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1791725158691 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816865 SAMN23217707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728644/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6020736694336 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6384906768799 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3194465637207 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816866 SAMN23213952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728645/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8720226287842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0294208526611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7769794464111 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816867 SAMN23217706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728646/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9251079559326 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3258361816406 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8355026245117 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816868 SAMN23213951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728647/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6411304473877 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.9232311248779 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5856304168701 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816869 SAMN23216732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728648/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5565357208252 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3196067810059 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9754190444946 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816870 SAMN23215997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728649/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.786994934082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9082832336426 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5966205596924 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816871 SAMN23216731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728650/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6843223571777 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8235702514648 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5073204040527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816872 SAMN23216730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728651/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7311744689941 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.5790271759033 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.26842212677 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816873 SAMN23217705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728652/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0972385406494 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5893001556396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4968528747559 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816874 SAMN23216729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728655/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8700160980225 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1989212036133 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7934513092041 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816875 SAMN23215996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728653/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7285633087158 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8336296081543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2193737030029 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816876 SAMN23217704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728654/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9756050109863 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2609233856201 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1912994384766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816877 SAMN23215995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728658/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9306116104126 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.9743680953979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7605209350586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816878 SAMN23216728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728656/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6168804168701 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9074954986572 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5872840881348 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816879 SAMN23216727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728657/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9614753723145 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6900997161865 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.230806350708 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816880 SAMN23216460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729881/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6630744934082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6459369659424 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1655807495117 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816881 SAMN23216458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729883/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9275722503662 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9543361663818 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7943572998047 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816882 SAMN23216459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729882/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7245807647705 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4793224334717 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2788047790527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816883 SAMN23215877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729884/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2723197937012 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1771221160889 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9875297546387 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816884 SAMN23216457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729885/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8426074981689 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8142757415771 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6168251037598 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816885 SAMN23214791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729886/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1423397064209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0829410552979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.825366973877 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816886 SAMN23215139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729887/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2760772705078 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2506122589111 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1493759155273 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816887 SAMN23213866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729888/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9027099609375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4286785125732 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9996814727783 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816888 SAMN23215138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729889/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6108646392822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3425159454346 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3194828033447 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816889 SAMN23215137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729890/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9645099639893 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.897611618042 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5861492156982 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816890 SAMN23215876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729892/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.348258972168 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0786037445068 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7210350036621 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816891 SAMN23214408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000729891/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9825687408447 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8404855728149 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.6912059783936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816892 SAMN23215135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729894/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8228025436401 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.839693069458 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6663570404053 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816893 SAMN23217683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729895/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2140350341797 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7555751800537 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.14670753479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816894 SAMN23215136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729893/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.197509765625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8689994812012 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.608003616333 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816895 SAMN23215134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729912/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7187557220459 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.4829187393188 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.3301753997803 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816896 SAMN23216456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729913/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4962158203125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3482608795166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8887767791748 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816897 SAMN23214209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729914/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2068843841553 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.311351776123 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9717922210693 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816898 SAMN23214627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729915/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8269710540771 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8799724578857 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7388801574707 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816899 SAMN23216455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729918/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8519191741943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.600830078125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5419616699219 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816900 SAMN23216454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729919/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0606594085693 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1279582977295 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8982486724854 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816901 SAMN23215875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729920/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0869197845459 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8158378601074 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.684986114502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816902 SAMN23214208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729921/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5169906616211 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.740161895752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.518404006958 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816903 SAMN23216453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729923/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0040512084961 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9820766448975 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8051681518555 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816904 SAMN23216452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729925/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8200645446777 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5612239837646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5152168273926 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816905 SAMN23216451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729927/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5577754974365 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7701988220215 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2760066986084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816906 SAMN23216450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729928/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.270881652832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4345474243164 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4935264587402 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816907 SAMN23216449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729929/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7901630401611 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6695709228516 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4501781463623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816908 SAMN23216448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729931/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.391845703125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8617992401123 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6867523193359 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816909 SAMN23217591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729932/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0161380767822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2231178283691 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7611446380615 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816910 SAMN23214626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729930/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0134057998657 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7947292327881 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.8047704696655 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816911 SAMN23216706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728730/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8179569244385 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7534103393555 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7468166351318 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816912 SAMN23216447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729934/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2476978302002 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.717004776001 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3376312255859 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816913 SAMN23215274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728731/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8283157348633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7506923675537 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.501070022583 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816914 SAMN23216705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728732/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.618896484375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7956123352051 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7403373718262 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816915 SAMN23214553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000728733/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0292491912842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8202705383301 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7465724945068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816916 SAMN23214257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728734/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3126811981201 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5348205566406 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2959575653076 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816917 SAMN23214256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728735/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6906204223633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9392280578613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8017997741699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816918 SAMN23215983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728736/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.544734954834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9314804077148 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6472835540771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816919 SAMN23213940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728738/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9742317199707 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9381828308105 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6811065673828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816920 SAMN23214811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728740/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8675155639648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2578754425049 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7713584899902 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816921 SAMN23215273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728741/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5097808837891 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8153190612793 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3100109100342 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816922 SAMN23214255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728739/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3345260620117 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2600803375244 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1745014190674 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816923 SAMN23215271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728743/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.6155643463135 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.5133504867554 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.9342603683472 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816924 SAMN23215272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728742/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2974891662598 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7885265350342 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1345024108887 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816925 SAMN23214674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728744/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0282039642334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8288402557373 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7626266479492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816926 SAMN23215270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728746/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9840621948242 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0557460784912 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7575778961182 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816927 SAMN23216703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728747/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3377799987793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3989276885986 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3075065612793 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816928 SAMN23216704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728745/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.5159101486206 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.3554887771606 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3034448623657 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816929 SAMN23216702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728749/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4038238525391 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8501281738281 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.431022644043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816930 SAMN23214483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000728748/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7599010467529 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7826194763184 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4461040496826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816931 SAMN23214810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728750/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.596960067749 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4757652282715 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4066486358643 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816932 SAMN23215269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728751/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5306701660156 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7047805786133 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3699150085449 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816933 SAMN23216701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728753/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5234851837158 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7443084716797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4505939483643 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816934 SAMN23215982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728752/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1181297302246 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3472957611084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1042098999023 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816935 SAMN23216700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728754/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3200340270996 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2344608306885 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1365718841553 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816936 SAMN23214673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728755/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7093696594238 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9009075164795 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6834011077881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816937 SAMN23214672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728756/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6685333251953 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8687114715576 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4759006500244 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816938 SAMN23217611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728758/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2127819061279 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5625381469727 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5007724761963 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816939 SAMN23216699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728757/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3508453369141 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7723217010498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9154529571533 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816940 SAMN23215268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728759/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2429618835449 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2310695648193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8388481140137 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816941 SAMN23214671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728761/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.640718460083 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7617149353027 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6824226379395 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816942 SAMN23214254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728760/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6837673187256 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5663242340088 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4229526519775 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816943 SAMN23214433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000729936/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8003215789795 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6001110076904 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7799396514893 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816944 SAMN23215267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728762/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.4687795639038 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.275975227356 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.9054069519043 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816945 SAMN23214953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000729935/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7013492584229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5934467315674 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4437389373779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816946 SAMN23213865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729938/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7723369598389 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6130275726318 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5313148498535 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816947 SAMN23215132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729939/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7433776855469 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8530387878418 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5943355560303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816948 SAMN23215133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729937/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1244735717773 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9294719696045 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8172607421875 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816949 SAMN23216446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729940/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.364652633667 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4660606384277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9194011688232 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816950 SAMN23215130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729942/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7924938201904 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4869060516357 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5978889465332 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816951 SAMN23215131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729941/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5320358276367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9765605926514 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6708145141602 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816952 SAMN23214207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729943/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4626598358154 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1378765106201 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1410255432129 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816953 SAMN23215129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729944/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0231323242188 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0079402923584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4972743988037 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816954 SAMN23215874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729945/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2815093994141 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2160167694092 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8188190460205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816955 SAMN23213864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729947/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.101713180542 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0997333526611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8140411376953 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816956 SAMN23216445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729946/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.577917098999 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6488399505615 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4817905426025 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816957 SAMN23215128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729949/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.192024230957 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2126140594482 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7805500030518 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816958 SAMN23214206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729948/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3650302886963 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4114723205566 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3995552062988 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816959 SAMN23214205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729950/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6911487579346 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0973453521729 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6171817779541 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816960 SAMN23214625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729951/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4330062866211 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3105297088623 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.896068572998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816961 SAMN23213863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729952/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2172069549561 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1399726867676 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0942783355713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816962 SAMN23215647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000729953/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0780353546143 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7015628814697 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5064659118652 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816963 SAMN23214624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729954/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6246700286865 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0769462585449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8252620697021 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816964 SAMN23217682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729956/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3666553497314 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7093334197998 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6893310546875 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816965 SAMN23215127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729955/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8010177612305 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6687412261963 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3511447906494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816966 SAMN23213862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729957/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9863872528076 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8619575500488 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5159168243408 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816967 SAMN23214204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729958/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3959827423096 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.2047939300537 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.0971202850342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816968 SAMN23217590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729959/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6989002227783 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6828861236572 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7123508453369 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816969 SAMN23215126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729960/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7533073425293 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.962682723999 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4432506561279 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816970 SAMN23213861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729961/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1007843017578 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7714309692383 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3756980895996 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816971 SAMN23215125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729962/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2186813354492 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8565158843994 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6772327423096 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816972 SAMN23214203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729963/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7583389282227 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6047878265381 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0710754394531 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816973 SAMN23216444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729965/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8646049499512 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.383243560791 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.6109104156494 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816974 SAMN23213860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729964/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5840282440186 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0680999755859 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8197460174561 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816975 SAMN23215124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729966/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8071060180664 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.509183883667 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.569314956665 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816976 SAMN23214459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000724342/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2415256500244 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0919990539551 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.751727104187 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816977 SAMN23217509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724343/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2170791625977 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2237758636475 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8163547515869 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816978 SAMN23214427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000724344/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.790246963501 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8440418243408 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4338779449463 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816979 SAMN23214966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000724345/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0744094848633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7905521392822 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7932014465332 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816980 SAMN23214370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724347/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8026676177979 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.902214050293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7231597900391 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816981 SAMN23215615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724346/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8966503143311 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8602027893066 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.66530418396 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816982 SAMN23217508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724348/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4622039794922 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1350078582764 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8666934967041 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816983 SAMN23214947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000724349/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7451009750366 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.8002490997314 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.5255107879639 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816984 SAMN23217507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724350/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6399173736572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7158870697021 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5072174072266 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816985 SAMN23217506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724352/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4661617279053 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5293045043945 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.836820602417 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816986 SAMN23216194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724353/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4794178009033 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4396667480469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1322402954102 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816987 SAMN23214447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000724351/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7903671264648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6549091339111 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4697303771973 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816988 SAMN23217505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724354/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7854881286621 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7772388458252 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3497333526611 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816989 SAMN23217504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724355/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6517295837402 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3414764404297 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2994022369385 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816990 SAMN23214497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NH-CDC-STM-000724356/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1503391265869 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2300968170166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2278308868408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816991 SAMN23213752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WV-CDC-STM-000724358/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0521850585938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9988689422607 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1251258850098 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816992 SAMN23217503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724357/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0281391143799 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0228118896484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6645450592041 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816993 SAMN23214394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OK-CDC-STM-000724359/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7131824493408 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.553955078125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1534786224365 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816994 SAMN23213762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000724360/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2111396789551 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3075332641602 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0426177978516 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816995 SAMN23215614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724361/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6368217468262 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3907413482666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2224578857422 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816996 SAMN23214139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000724363/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3731060028076 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0906887054443 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7661018371582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816997 SAMN23215613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724362/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0661468505859 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5615882873535 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1179981231689 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816998 SAMN23213771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000724364/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5182266235352 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6870670318604 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2519683837891 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12816999 SAMN23214094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724365/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.951753616333 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0875205993652 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7436103820801 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817000 SAMN23214393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OK-CDC-STM-000724366/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.268238067627 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1938438415527 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0205478668213 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817001 SAMN23217757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000724367/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7620077133179 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.6608772277832 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.4039039611816 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817002 SAMN23213751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WV-CDC-STM-000724368/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5494594573975 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5572891235352 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.794095993042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817003 SAMN23214468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-000724369/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5375194549561 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9337024688721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7954769134521 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817004 SAMN23217502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724370/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.1710453033447 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.2813386917114 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 12.8167581558228 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817005 SAMN23215612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724371/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8070316314697 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7140827178955 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6798133850098 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817006 SAMN23217501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724372/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.5497398376465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.3881130218506 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.7113094329834 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817007 SAMN23217500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724373/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.4930601119995 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.5450754165649 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.8228073120117 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817008 SAMN23216178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724480/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.6597776412964 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.4982929229736 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.3690490722656 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817009 SAMN23214361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724481/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5863246917725 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8697071075439 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.534351348877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817010 SAMN23215589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724482/2021 collected_by 'Helix' collection_date 2021-08-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5810832977295 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5528411865234 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7558288574219 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817011 SAMN23214360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724483/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0060043334961 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1881256103516 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8195304870605 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817012 SAMN23214138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000724484/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2896060943604 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1789245605469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8291339874268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817013 SAMN23215588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724485/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2950668334961 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.190149307251 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7881488800049 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817014 SAMN23214359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724486/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7725086212158 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8578395843506 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7541217803955 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817015 SAMN23215587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724487/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.5124530792236 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.5759773254395 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.4912443161011 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817016 SAMN23215586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724488/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2647476196289 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6521053314209 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0977897644043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817017 SAMN23217479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724491/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8789920806885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7649192810059 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7423572540283 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817018 SAMN23214757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724490/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5936050415039 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4876575469971 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.275634765625 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817019 SAMN23214358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724493/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3815650939941 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7636470794678 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5042934417725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817020 SAMN23214756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724492/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8290596008301 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0011444091797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.9439163208008 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817021 SAMN23217478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724494/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0329284667969 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8361587524414 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7553863525391 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817022 SAMN23215585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724495/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.4227056503296 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 12.9369144439697 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 12.7588691711426 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817023 SAMN23214569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000725002/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8532848358154 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8301620483398 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7736988067627 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817024 SAMN23214357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725003/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0871887207031 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.727840423584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4936351776123 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817025 SAMN23217477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725004/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8348178863525 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8287563323975 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6425514221191 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817026 SAMN23215584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725005/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2797374725342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0809078216553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6010570526123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817027 SAMN23216177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725006/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3742656707764 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4103660583496 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2230472564697 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817028 SAMN23214495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000725007/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2929573059082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9431838989258 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7896137237549 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817029 SAMN23214356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725008/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6267375946045 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6455211639404 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1747512817383 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817030 SAMN23214755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000725012/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8245239257812 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8190326690674 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.748477935791 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817031 SAMN23215583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725009/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.278148651123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1263198852539 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6737403869629 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817032 SAMN23216176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725013/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5620651245117 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3176517486572 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1259155273438 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817033 SAMN23217476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725014/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6968784332275 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8235683441162 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7515850067139 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817034 SAMN23214754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000725015/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8812637329102 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8735103607178 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.782808303833 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817035 SAMN23217475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725016/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3515491485596 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.691385269165 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.414213180542 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817036 SAMN23215582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725017/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8603572845459 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0239658355713 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.765064239502 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817037 SAMN23214355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725020/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5788383483887 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8220405578613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7167873382568 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817038 SAMN23215581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725021/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8398475646973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8395118713379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7797374725342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817039 SAMN23217730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726910/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3746738433838 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9226970672607 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8198623657227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817040 SAMN23215580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725022/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3998203277588 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5757656097412 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4628295898438 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817041 SAMN23216090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726911/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.780445098877 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7132568359375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5312175750732 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817042 SAMN23216089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726912/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5109233856201 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7020645141602 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6493625640869 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817043 SAMN23216088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726913/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7791728973389 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7233924865723 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6020584106445 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817044 SAMN23216087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726915/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6925201416016 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7492256164551 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7341899871826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817045 SAMN23216086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726916/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8352508544922 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1525688171387 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7301845550537 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817046 SAMN23217251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726917/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.896993637085 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8147621154785 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4600467681885 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817047 SAMN23214303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726918/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 25.427806854248 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6280078887939 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4309997558594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817048 SAMN23217250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726919/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4424247741699 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.655200958252 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4703044891357 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817049 SAMN23215434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726922/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2388687133789 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5031681060791 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1910667419434 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817050 SAMN23215435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726920/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8364887237549 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8396015167236 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8362827301025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817051 SAMN23214715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726924/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.104024887085 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.169506072998 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8531970977783 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817052 SAMN23215433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726923/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7607746124268 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5780601501465 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3847751617432 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817053 SAMN23217249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726925/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7885665893555 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.112699508667 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6849575042725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817054 SAMN23215432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726927/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8117084503174 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8850021362305 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7557373046875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817055 SAMN23215672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726926/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5203380584717 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4327144622803 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2815284729004 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817056 SAMN23215430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726930/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4487800598145 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7863521575928 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2484970092773 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817057 SAMN23215431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726928/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4554138183594 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2205696105957 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2663459777832 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817058 SAMN23215429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726932/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0604496002197 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8875694274902 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7620429992676 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817059 SAMN23214012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726931/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2725601196289 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.753662109375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5928344726562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817060 SAMN23215428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726933/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9887886047363 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8249378204346 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6815719604492 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817061 SAMN23214714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726934/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8248529434204 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.788366317749 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6168918609619 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817062 SAMN23215671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726935/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5366554260254 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4969863891602 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0517692565918 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817063 SAMN23215426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726937/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7782192230225 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9990367889404 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7560024261475 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817064 SAMN23215427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726936/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5504055023193 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3297557830811 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.261905670166 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817065 SAMN23215425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726939/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8532905578613 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6724090576172 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1730766296387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817066 SAMN23214302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726938/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7835559844971 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1535358428955 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5047416687012 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817067 SAMN23215424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726940/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3549346923828 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2463932037354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5606880187988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817068 SAMN23214562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000726941/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5542850494385 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5671863555908 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2346801757812 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817069 SAMN23214713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726942/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6871109008789 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9638614654541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2025184631348 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817070 SAMN23215423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726943/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7390480041504 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0529689788818 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5989780426025 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817071 SAMN23217729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726944/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3857650756836 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3498954772949 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2206420898438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817072 SAMN23214618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730139/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7008266448975 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6754837036133 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3626804351807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817073 SAMN23215646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000730138/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0028305053711 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9698886871338 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7287578582764 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817074 SAMN23216432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730140/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.929349899292 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.1670112609863 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.9442539215088 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817075 SAMN23214197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730141/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4264602661133 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0037136077881 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6320896148682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817076 SAMN23216431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730142/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4355907440186 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7824935913086 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3350715637207 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817077 SAMN23216430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730143/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8800945281982 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9727516174316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7832736968994 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817078 SAMN23215868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730145/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6960544586182 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9859733581543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8593826293945 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817079 SAMN23216429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730144/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4492435455322 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6441116333008 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3194618225098 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817080 SAMN23215867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730146/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6870441436768 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9657802581787 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7985935211182 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817081 SAMN23214541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730147/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7519979476929 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7542839050293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4917869567871 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817082 SAMN23215645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000730148/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6440811157227 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1449508666992 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6390171051025 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817083 SAMN23214617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730149/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0045318603516 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.433479309082 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0460376739502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817084 SAMN23214616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730151/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8556060791016 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7359790802002 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5020084381104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817085 SAMN23216428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730152/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8129577636719 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.7343158721924 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.5725154876709 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817086 SAMN23214196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730150/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1393127441406 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6071319580078 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.37180519104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817087 SAMN23214105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000730154/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6594829559326 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6838340759277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3977317810059 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817088 SAMN23214615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730153/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5696182250977 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4196949005127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0985908508301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817089 SAMN23216427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730155/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1426820755005 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1937274932861 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7700939178467 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817090 SAMN23213847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730156/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.6266565322876 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.4613418579102 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.8602752685547 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817091 SAMN23216426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730157/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4823150634766 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3216724395752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7912940979004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817092 SAMN23214614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730158/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2114582061768 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7594470977783 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3746528625488 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817093 SAMN23215866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730159/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7370262145996 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1098098754883 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7874050140381 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817094 SAMN23215865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730161/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2609806060791 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5596179962158 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2257232666016 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817095 SAMN23215109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730160/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6430988311768 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.46262550354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2294178009033 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817096 SAMN23215864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730162/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.274453163147 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.7959403991699 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.7383146286011 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817097 SAMN23213747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WV-CDC-STM-000730163/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2299518585205 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0756778717041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2643280029297 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817098 SAMN23215108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730164/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7501430511475 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8168773651123 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5282077789307 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817099 SAMN23217586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730165/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.830623626709 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8995532989502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6700477600098 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817100 SAMN23214952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000730166/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9548931121826 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9289970397949 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6664218902588 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817101 SAMN23214613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730168/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6227626800537 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8243942260742 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5346965789795 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817102 SAMN23214612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730169/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7184505462646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7767448425293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5575084686279 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817103 SAMN23215107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730167/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6811656951904 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9788036346436 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5174522399902 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817104 SAMN23214010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727016/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9940567016602 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.557014465332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3239707946777 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817105 SAMN23214936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000727017/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8741760253906 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7642307281494 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6200771331787 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817106 SAMN23214298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727018/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6771774291992 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2180137634277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3717861175537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817107 SAMN23215408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727019/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.020263671875 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8547134399414 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5774364471436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817108 SAMN23214009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727021/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6322040557861 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5744495391846 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3655452728271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817109 SAMN23217229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727020/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6896095275879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0762805938721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.6700992584229 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817110 SAMN23214420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000727023/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6302795410156 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9753646850586 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8110580444336 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817111 SAMN23214297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727024/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0688438415527 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1921424865723 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9146499633789 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817112 SAMN23215407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727022/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9552955627441 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5257225036621 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2916393280029 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817113 SAMN23217228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727025/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5945835113525 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6180973052979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0774707794189 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817114 SAMN23214296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727026/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7119312286377 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.555814743042 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4674549102783 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817115 SAMN23217227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727027/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4075736999512 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9913291931152 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7376689910889 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817116 SAMN23215406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727028/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7785148620605 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.67458152771 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2357540130615 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817117 SAMN23217226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727029/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9519634246826 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0286331176758 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9070377349854 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817118 SAMN23215405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727030/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.318977355957 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5025043487549 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0375480651855 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817119 SAMN23217225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727031/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0851535797119 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2648067474365 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.973108291626 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817120 SAMN23214970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KS-CDC-STM-000727033/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5548496246338 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1404418945312 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7535400390625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817121 SAMN23215404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727032/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7198467254639 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7899913787842 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8034954071045 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817122 SAMN23214708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727034/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7785968780518 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3506469726562 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1692180633545 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817123 SAMN23215403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727035/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.777042388916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6966972351074 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5249214172363 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817124 SAMN23215402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727037/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8987636566162 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3280429840088 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1481838226318 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817125 SAMN23214008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727036/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3383102416992 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5432205200195 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3237476348877 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817126 SAMN23214295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727038/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1012496948242 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3593692779541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9907302856445 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817127 SAMN23216076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727039/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1399593353271 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1720848083496 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1641006469727 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817128 SAMN23214826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000727041/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2169494628906 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4154148101807 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2011775970459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817129 SAMN23217224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727042/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9047546386719 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9902000427246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7779521942139 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817130 SAMN23217779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000727040/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7990760803223 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6874828338623 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4471759796143 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817131 SAMN23214007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727043/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4552516937256 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2950878143311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9684963226318 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817132 SAMN23215401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727044/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5022926330566 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3622150421143 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1329593658447 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817133 SAMN23217223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727045/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7803840637207 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8262233734131 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9629135131836 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817134 SAMN23217222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727046/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6335983276367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0771980285645 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.985408782959 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817135 SAMN23215400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727047/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0129528045654 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.002103805542 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7633686065674 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817136 SAMN23216399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730273/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8190956115723 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9096775054932 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.579626083374 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817137 SAMN23215851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730272/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2311420440674 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6018867492676 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9341354370117 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817138 SAMN23216398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730274/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1688365936279 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.236120223999 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8673572540283 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817139 SAMN23216397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730275/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1243915557861 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5951557159424 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.091682434082 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817140 SAMN23216396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730276/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2090244293213 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1068420410156 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8200588226318 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817141 SAMN23216395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730277/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5817050933838 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3938827514648 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8997058868408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817142 SAMN23215082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730278/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3150177001953 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7632141113281 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.796407699585 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817143 SAMN23213842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730279/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2346420288086 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0574550628662 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7490272521973 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817144 SAMN23216394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730280/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8480815887451 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4955635070801 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7171268463135 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817145 SAMN23214381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-000730281/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.376781463623 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3700389862061 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1237201690674 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817146 SAMN23215080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730283/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4156646728516 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6117687225342 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9699287414551 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817147 SAMN23215081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730282/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.300537109375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0670948028564 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7203273773193 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817148 SAMN23215850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730284/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.5881681442261 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.772590637207 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5399961471558 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817149 SAMN23214187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730285/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4873943328857 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3536624908447 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9468097686768 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817150 SAMN23213841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730286/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.1514873504639 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.2459840774536 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.7717485427856 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817151 SAMN23216392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730288/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0545501708984 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7504463195801 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6434326171875 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817152 SAMN23216393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730287/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7932434082031 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5722579956055 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3501262664795 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817153 SAMN23217583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730289/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2547283172607 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2975234985352 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0481243133545 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817154 SAMN23216391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730292/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1227111816406 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7166767120361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2184104919434 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817155 SAMN23214608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730290/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5072326660156 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7035121917725 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1225528717041 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817156 SAMN23217679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730291/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5556716918945 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0730743408203 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8277835845947 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817157 SAMN23216390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730293/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0445995330811 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0746192932129 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8062629699707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817158 SAMN23217582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730294/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1657962799072 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0632915496826 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.868314743042 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817159 SAMN23214186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730295/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7215003967285 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1335887908936 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7501945495605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817160 SAMN23215079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730303/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7739505767822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6375789642334 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0759868621826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817161 SAMN23216389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730302/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8235969543457 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7870712280273 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7703475952148 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817162 SAMN23217678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730304/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7575912475586 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9449882507324 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8314876556396 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817163 SAMN23217677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730305/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2399520874023 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3546009063721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0374736785889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817164 SAMN23214539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730308/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5502223968506 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7253437042236 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3468456268311 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817165 SAMN23216388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730307/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8264408111572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.845645904541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.621021270752 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817166 SAMN23215078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730306/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7963333129883 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6643161773682 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4679203033447 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817167 SAMN23213840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730309/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7621726989746 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8831844329834 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.642614364624 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817168 SAMN23215227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729085/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7038993835449 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6207942962646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1707820892334 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817169 SAMN23213913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729084/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5311679840088 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4780731201172 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1356449127197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817170 SAMN23215226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729086/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1382884979248 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3173027038574 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3217067718506 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817171 SAMN23215225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729087/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9548015594482 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3444957733154 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8396625518799 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817172 SAMN23216632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729088/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.922119140625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9915103912354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8127346038818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817173 SAMN23216631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729089/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7502365112305 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7649326324463 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5347194671631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817174 SAMN23215224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729090/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2875423431396 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6718711853027 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4366722106934 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817175 SAMN23214547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000729091/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8454303741455 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8113021850586 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5308742523193 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817176 SAMN23214655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729092/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3543548583984 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2834491729736 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1518173217773 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817177 SAMN23215223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729093/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.105806350708 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4069213867188 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8916187286377 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817178 SAMN23215222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729094/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9010763168335 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2463474273682 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7790260314941 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817179 SAMN23214802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729095/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2606945037842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9329509735107 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7215671539307 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817180 SAMN23215221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729102/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.021580696106 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8144636154175 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5910720825195 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817181 SAMN23215655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000729103/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7876644134521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7968559265137 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6480274200439 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817182 SAMN23216630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729105/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7480812072754 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3867893218994 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2055358886719 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817183 SAMN23215949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729106/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1580448150635 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9371738433838 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6457786560059 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817184 SAMN23215220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729104/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7789669036865 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9868850708008 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6577739715576 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817185 SAMN23215948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729107/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9108619689941 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6550693511963 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7721061706543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817186 SAMN23216629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729108/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5858421325684 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8078079223633 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6147747039795 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817187 SAMN23214237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729109/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7918529510498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8355674743652 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7295665740967 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817188 SAMN23214236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729110/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8263053894043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9340305328369 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7300300598145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817189 SAMN23214235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729112/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4848251342773 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7756004333496 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3985500335693 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817190 SAMN23215219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729111/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9414005279541 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.086275100708 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6531867980957 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817191 SAMN23215218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729114/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2441501617432 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9223499298096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9823589324951 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817192 SAMN23214654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729113/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7960357666016 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5392513275146 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2813682556152 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817193 SAMN23214234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729116/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1349277496338 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5639839172363 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8824787139893 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817194 SAMN23215947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729115/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9155216217041 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1287975311279 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9585571289062 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817195 SAMN23215217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729117/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6105422973633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4908981323242 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.239990234375 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817196 SAMN23215946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729118/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2329349517822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1850204467773 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4342021942139 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817197 SAMN23217772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000729119/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8482131958008 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7157211303711 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4707660675049 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817198 SAMN23216628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729120/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8055057525635 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7552108764648 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6538906097412 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817199 SAMN23215216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729121/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2796421051025 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9459934234619 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.943733215332 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817200 SAMN23217453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725145/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2658939361572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.505802154541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1743850708008 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817201 SAMN23217452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725146/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2868595123291 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2040405273438 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7650527954102 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817202 SAMN23214078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725147/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3649864196777 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5656089782715 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1307964324951 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817203 SAMN23214750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000725149/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.0250997543335 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.9386348724365 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.8817710876465 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817204 SAMN23217556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DC-CDC-STM-000725148/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.442608833313 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3017196655273 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.935492515564 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817205 SAMN23215561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725150/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0806713104248 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2591037750244 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8556079864502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817206 SAMN23214117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000725152/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.670352935791 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7015571594238 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4480419158936 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817207 SAMN23216165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725153/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7839870452881 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5973110198975 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.658052444458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817208 SAMN23214350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725155/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7510299682617 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5376739501953 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2840232849121 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817209 SAMN23217451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725154/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8007698059082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.758358001709 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7406787872314 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817210 SAMN23217450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725156/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4540309906006 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3074817657471 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3460369110107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817211 SAMN23214523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000725157/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1078224182129 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6904182434082 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5091648101807 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817212 SAMN23217449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725158/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7168788909912 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7726554870605 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7190704345703 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817213 SAMN23216164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725161/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3394451141357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0353260040283 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7275638580322 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817214 SAMN23215559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725162/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.850435256958 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.672872543335 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3938655853271 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817215 SAMN23215560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725160/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1922855377197 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4456043243408 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0809288024902 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817216 SAMN23214939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000725163/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.5760507583618 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.6357622146606 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.2626085281372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817217 SAMN23217448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725164/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.703987121582 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.3591051101685 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.7943305969238 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817218 SAMN23214349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725165/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0934371948242 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1477298736572 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9563179016113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817219 SAMN23215558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725166/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4491119384766 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7106056213379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1378231048584 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817220 SAMN23214077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725167/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0477867126465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2904262542725 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9782390594482 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817221 SAMN23214938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000725168/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5570507049561 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5676708221436 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2877731323242 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817222 SAMN23216163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725169/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7989406585693 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7949600219727 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4892597198486 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817223 SAMN23214076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725170/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9823951721191 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8329448699951 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0386123657227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817224 SAMN23215557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725171/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.607120513916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.335807800293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9127197265625 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817225 SAMN23215555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725173/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7991752624512 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1083736419678 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8051528930664 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817226 SAMN23215556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725172/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5147132873535 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1671962738037 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2197456359863 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817227 SAMN23216162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725174/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.46120262146 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6425838470459 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.406566619873 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817228 SAMN23217447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725175/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8622856140137 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0998229980469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4409332275391 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817229 SAMN23214424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000725176/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8164768218994 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.970495223999 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6861820220947 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817230 SAMN23214075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725177/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6583385467529 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3496990203857 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.578218460083 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817231 SAMN23217446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725178/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5586471557617 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2541370391846 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.054256439209 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817232 SAMN23215554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725179/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5689220428467 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7519226074219 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6546936035156 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817233 SAMN23214348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725180/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2820434570312 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1318321228027 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0457248687744 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817234 SAMN23214749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000725181/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5916271209717 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6515693664551 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4441661834717 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817235 SAMN23214839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000725182/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5903759002686 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.609619140625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0340156555176 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817236 SAMN23217445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725183/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5455760955811 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3618698120117 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0745315551758 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817237 SAMN23217444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725184/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0698204040527 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1558456420898 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5767307281494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817238 SAMN23217443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725185/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.5487031936646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.1997499465942 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.2178707122803 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817239 SAMN23214074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725186/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4818916320801 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5290222167969 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2963447570801 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817240 SAMN23217442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725187/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7813272476196 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7632389068604 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4047679901123 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817241 SAMN23217441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725188/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3584728240967 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9989795684814 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8402118682861 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817242 SAMN23214773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000725192/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.774227142334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6087055206299 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0555877685547 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817243 SAMN23217440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725191/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.4733743667603 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.410306930542 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.0166883468628 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817244 SAMN23217439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725193/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5808963775635 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9233741760254 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2621364593506 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817245 SAMN23217438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725194/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6688804626465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1247291564941 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6430015563965 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817246 SAMN23217750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000725195/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6169128417969 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4902954101562 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2372207641602 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817247 SAMN23216161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725303/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4794082641602 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4749431610107 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3197021484375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817248 SAMN23215553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725304/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6428394317627 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7100067138672 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3076629638672 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817249 SAMN23217651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000725305/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6231727600098 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9520053863525 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5622177124023 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817250 SAMN23214073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725306/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3887729644775 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2518463134766 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0702114105225 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817251 SAMN23217437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725307/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5189075469971 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.947208404541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5427494049072 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817252 SAMN23216160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725308/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 34.0813064575195 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.642765045166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1935539245605 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817253 SAMN23215552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725309/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6361846923828 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0333824157715 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8169498443604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817254 SAMN23215551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725310/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3552570343018 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5554389953613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3412990570068 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817255 SAMN23215550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725311/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5023860931396 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5759601593018 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9896793365479 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817256 SAMN23215549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725313/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4581298828125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8241519927979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5858783721924 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817257 SAMN23214072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725312/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.7580060958862 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.5485277175903 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.6442079544067 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817258 SAMN23214071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725315/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3952541351318 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5486183166504 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0149021148682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817259 SAMN23215685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000725314/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0011005401611 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6146125793457 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.155237197876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817260 SAMN23215548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725316/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7589302062988 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5570983886719 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2927360534668 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817261 SAMN23215547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725318/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1017875671387 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1574745178223 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7957363128662 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817262 SAMN23214347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725317/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0442028045654 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3770637512207 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9729557037354 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817263 SAMN23215667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000727630/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5273017883301 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.9359436035156 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7464237213135 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817264 SAMN23217723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727631/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.495777130127 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7782573699951 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7423305511475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817265 SAMN23214748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000725319/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.36838722229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8708000183105 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3765106201172 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817266 SAMN23214281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727632/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5825748443604 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8037700653076 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7100868225098 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817267 SAMN23215375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727633/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3168754577637 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5649070739746 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9209957122803 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817268 SAMN23217185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727634/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9347839355469 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6947383880615 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6308193206787 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817269 SAMN23215374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727636/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9784049987793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7994842529297 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.629602432251 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817270 SAMN23217184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727635/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.2619390487671 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.1321573257446 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.8239250183105 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817271 SAMN23215373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727637/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8997764587402 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1284503936768 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8398323059082 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817272 SAMN23217183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727638/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.397439956665 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.063985824585 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4555568695068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817273 SAMN23217182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727639/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6817798614502 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8256168365479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5531444549561 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817274 SAMN23215372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727641/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1045837402344 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1480369567871 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8369178771973 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817275 SAMN23214695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727640/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.4518213272095 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.1890449523926 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.8196182250977 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817276 SAMN23216043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727642/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8414478302002 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9541835784912 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7762355804443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817277 SAMN23216042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727646/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.524658203125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8063182830811 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2479953765869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817278 SAMN23214417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000727644/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4459419250488 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7224102020264 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2000923156738 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817279 SAMN23213991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727645/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.218936920166 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2117938995361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0753326416016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817280 SAMN23217181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727647/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.47873878479 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8430728912354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.559009552002 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817281 SAMN23213990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727649/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2687072753906 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.344446182251 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2013244628906 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817282 SAMN23214280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727648/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.8515396118164 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7462139129639 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7873001098633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817283 SAMN23216041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727650/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8062191009521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2548580169678 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8823871612549 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817284 SAMN23214821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000727651/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2232265472412 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3704128265381 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1474666595459 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817285 SAMN23215371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727652/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.4404716491699 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.3381509780884 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.0975494384766 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817286 SAMN23214279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727653/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4477424621582 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5213947296143 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2918930053711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817287 SAMN23215370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727654/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5665836334229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2356071472168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9651279449463 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817288 SAMN23217180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727655/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.839822769165 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5740432739258 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4367084503174 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817289 SAMN23216040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727657/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4651718139648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7215023040771 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4339752197266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817290 SAMN23214278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727658/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6065292358398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4688682556152 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0659160614014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817291 SAMN23215666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000727656/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0891971588135 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8434505462646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.833963394165 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817292 SAMN23215369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727659/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2209377288818 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2851867675781 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1361389160156 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817293 SAMN23217178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727661/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6315307617188 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7444286346436 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3668823242188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817294 SAMN23217179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727660/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1503944396973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8148212432861 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.724536895752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817295 SAMN23217177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727662/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8991374969482 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8729915618896 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6756782531738 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817296 SAMN23216606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729155/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6195373535156 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7264976501465 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3990173339844 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817297 SAMN23216605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729156/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.818531036377 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3339729309082 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8376369476318 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817298 SAMN23216604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729157/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3730945587158 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4378414154053 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0316257476807 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817299 SAMN23216603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729158/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2175064086914 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7973861694336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4452018737793 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817300 SAMN23216602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729159/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7764854431152 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3576602935791 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0270328521729 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817301 SAMN23214653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729161/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.8459053039551 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7781543731689 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5426797866821 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817302 SAMN23213908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729160/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6422100067139 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2687168121338 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0096397399902 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817303 SAMN23214233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729162/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2731513977051 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8503723144531 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7371921539307 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817304 SAMN23217562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000729163/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4109687805176 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6774673461914 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3614597320557 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817305 SAMN23213907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729165/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3571186065674 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.35032081604 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9136695861816 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817306 SAMN23214130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000729164/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2104396820068 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0759754180908 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1319465637207 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817307 SAMN23214232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729167/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8160839080811 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.753927230835 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7799129486084 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817308 SAMN23215215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729168/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6951427459717 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2062091827393 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9834899902344 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817309 SAMN23213906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729169/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9279460906982 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0349025726318 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7781066894531 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817310 SAMN23214415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000729171/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4916896820068 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3282165527344 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2815132141113 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817311 SAMN23215937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729172/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0443115234375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2268867492676 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2862720489502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817312 SAMN23216601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729173/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2757472991943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7521648406982 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3828392028809 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817313 SAMN23215938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729170/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2810039520264 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5290832519531 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4192676544189 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817314 SAMN23216600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729176/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5094966888428 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6618499755859 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2118682861328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817315 SAMN23215213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729175/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0526256561279 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1316680908203 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7646751403809 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817316 SAMN23215214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729174/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1450500488281 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8045902252197 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7750492095947 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817317 SAMN23214436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000729178/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2472400665283 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5559597015381 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.386043548584 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817318 SAMN23214801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729179/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4380702972412 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1826629638672 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7485542297363 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817319 SAMN23215936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729180/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8098449707031 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1916065216064 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7747383117676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817320 SAMN23214652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729177/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7741508483887 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7684440612793 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6058197021484 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817321 SAMN23215212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729182/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.77561378479 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3128623962402 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5240039825439 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817322 SAMN23214480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000729183/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4213237762451 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3680934906006 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0444526672363 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817323 SAMN23215654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000729181/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6145706176758 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8070087432861 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6478633880615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817324 SAMN23214385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-000729185/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3513584136963 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2525196075439 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3192615509033 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817325 SAMN23213905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729184/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3625354766846 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4155693054199 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1318511962891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817326 SAMN23216599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729186/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.43190574646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2460079193115 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8203296661377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817327 SAMN23216598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729187/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0024890899658 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9037094116211 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3353729248047 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817328 SAMN23217726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727521/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8179779052734 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7845573425293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6082935333252 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817329 SAMN23214000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727520/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4063529968262 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.925142288208 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7942085266113 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817330 SAMN23214559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000727522/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1820106506348 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9619979858398 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8433208465576 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817331 SAMN23214289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727524/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4308929443359 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.451192855835 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3271942138672 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817332 SAMN23217203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727525/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7859382629395 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0268058776855 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5790233612061 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817333 SAMN23217204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727523/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6336441040039 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4426097869873 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3362159729004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817334 SAMN23217202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727527/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.2661714553833 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.5964517593384 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.4434461593628 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817335 SAMN23216062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727529/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.671142578125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.632905960083 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.453784942627 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817336 SAMN23217201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727528/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2585945129395 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3091125488281 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9655704498291 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817337 SAMN23216063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727526/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7931661605835 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8402347564697 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7285041809082 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817338 SAMN23213999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727530/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8006896972656 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8068447113037 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8036098480225 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817339 SAMN23213998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727531/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9346904754639 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2040214538574 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9301013946533 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817340 SAMN23214704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727532/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4537410736084 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3473453521729 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8547554016113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817341 SAMN23216061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727534/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6606769561768 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7828502655029 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7387027740479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817342 SAMN23217200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727533/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5655479431152 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5912666320801 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3823890686035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817343 SAMN23216059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727537/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.467321395874 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9919033050537 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1605548858643 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817344 SAMN23216060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727536/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2141075134277 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6576766967773 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3121452331543 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817345 SAMN23216058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727538/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3588695526123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4822788238525 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6493835449219 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817346 SAMN23216057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727539/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.920726776123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2411594390869 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7523288726807 lineage/clade name AY.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817347 SAMN23214703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727541/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9826717376709 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0008411407471 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8010082244873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817348 SAMN23214288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727543/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4916944503784 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1532325744629 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7732601165771 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817349 SAMN23217199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727540/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5944862365723 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6691856384277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.566837310791 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817350 SAMN23217725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727542/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8007831573486 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.3648834228516 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7351627349854 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817351 SAMN23214824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000727544/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.2067918777466 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.758092880249 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.6111392974854 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817352 SAMN23217198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727545/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2331848144531 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2717781066895 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8804759979248 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817353 SAMN23214135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000727546/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6641407012939 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4499168395996 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.806095123291 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817354 SAMN23217197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727547/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7788505554199 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.5817527770996 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.4184904098511 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817355 SAMN23213997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727549/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5411357879639 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4762878417969 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2909145355225 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817356 SAMN23217196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727551/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0997257232666 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2374324798584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7446422576904 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817357 SAMN23214702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727550/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.078088760376 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1145553588867 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9806480407715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817358 SAMN23214488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000727552/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5935001373291 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6650485992432 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5683670043945 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817359 SAMN23216056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727553/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.0175552368164 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.93434715271 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.7740297317505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817360 SAMN23213989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727663/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1373348236084 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6040420532227 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3353939056396 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817361 SAMN23216039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727665/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.118444442749 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3135585784912 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.118350982666 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817362 SAMN23217176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727664/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5167083740234 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6475391387939 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2357959747314 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817363 SAMN23215368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727666/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9349269866943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.696216583252 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5079193115234 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817364 SAMN23216038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727667/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.767894744873 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0438652038574 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.345329284668 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817365 SAMN23214438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000727668/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7709531784058 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.076358795166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5216178894043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817366 SAMN23217175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727670/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3475551605225 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4965763092041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1622314453125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817367 SAMN23215367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727669/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3382625579834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1508617401123 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8021335601807 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817368 SAMN23217174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727671/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3007621765137 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0110874176025 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0521965026855 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817369 SAMN23214146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-000727672/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0558300018311 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3272037506104 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8347454071045 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817370 SAMN23215366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727673/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5366039276123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5188083648682 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9429054260254 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817371 SAMN23217778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000727674/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0795068740845 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0406398773193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.6914463043213 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817372 SAMN23214933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000727675/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0660419464111 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.882532119751 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1352062225342 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817373 SAMN23217173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727676/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8792533874512 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7882518768311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6528949737549 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817374 SAMN23216037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727677/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1853103637695 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0241374969482 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.794713973999 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817375 SAMN23215364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727680/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3556995391846 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2016983032227 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7440738677979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817376 SAMN23214277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727678/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.947566986084 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5837020874023 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5236473083496 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817377 SAMN23215365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727679/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1990509033203 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7738018035889 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.32688331604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817378 SAMN23217172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727681/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1955451965332 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3518505096436 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7570114135742 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817379 SAMN23216036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727683/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2223796844482 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4406204223633 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8741111755371 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817380 SAMN23213988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727682/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6476097106934 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4491310119629 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.33518409729 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817381 SAMN23213759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000727684/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 21 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9786720275879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.014139175415 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8586139678955 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817382 SAMN23215363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727685/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0884571075439 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6365184783936 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2493457794189 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817383 SAMN23213779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000727686/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4320449829102 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2682495117188 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.99778175354 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817384 SAMN23217171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727688/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.854528427124 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7626705169678 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7178993225098 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817385 SAMN23215362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727690/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0541400909424 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3450965881348 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8841304779053 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817386 SAMN23217170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727689/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.1110363006592 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.6024188995361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.6038274765015 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817387 SAMN23214485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000727691/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9683589935303 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7968406677246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6545219421387 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817388 SAMN23215361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727692/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4368915557861 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3898906707764 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7661209106445 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817389 SAMN23214276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727693/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6321849822998 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9640254974365 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9576644897461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817390 SAMN23214694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727694/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.753625869751 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8817024230957 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7321662902832 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817391 SAMN23217169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727695/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7672252655029 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5293827056885 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0380821228027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817392 SAMN23215211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729188/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0650501251221 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9848251342773 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6485366821289 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817393 SAMN23214414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000729190/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8091163635254 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7875328063965 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5479011535645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817394 SAMN23215653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000729189/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6967887878418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5202693939209 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4017753601074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817395 SAMN23217600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729191/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4780673980713 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7941818237305 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4864292144775 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817396 SAMN23214479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000729192/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8242778778076 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8530960083008 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6025695800781 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817397 SAMN23215210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729193/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5769748687744 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.288782119751 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7544994354248 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817398 SAMN23214231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729194/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8265552520752 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7640800476074 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0503997802734 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817399 SAMN23214509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000729195/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.399974822998 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2777290344238 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9428577423096 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817400 SAMN23216597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729202/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6253242492676 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6108818054199 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2436866760254 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817401 SAMN23215935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729203/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5970592498779 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1460304260254 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1364841461182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817402 SAMN23217771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000729205/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9814615249634 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0697822570801 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7520046234131 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817403 SAMN23216596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729204/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5848731994629 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7004051208496 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4416046142578 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817404 SAMN23216595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729206/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7249698638916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4408302307129 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4987106323242 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817405 SAMN23216594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729207/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7242679595947 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7599105834961 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.357063293457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817406 SAMN23216593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729208/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7772521972656 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1313056945801 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8023433685303 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817407 SAMN23216592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729209/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5317440032959 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4853038787842 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1000938415527 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817408 SAMN23215934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729211/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.798807144165 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7952098846436 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4012432098389 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817409 SAMN23216591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729210/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.332727432251 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8077487945557 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5437602996826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817410 SAMN23216590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729212/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9108600616455 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8423519134521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0141048431396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817411 SAMN23216589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729213/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.847562789917 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9714279174805 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9821796417236 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817412 SAMN23213904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729216/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6486282348633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4571399688721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0517539978027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817413 SAMN23216588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729214/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1871604919434 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9375915527344 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6110553741455 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817414 SAMN23216587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729215/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5058612823486 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.7055187225342 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.0367393493652 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817415 SAMN23216586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729218/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7200775146484 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8102245330811 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5577774047852 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817416 SAMN23214508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000729217/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.8349514007568 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7938528060913 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.2769775390625 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817417 SAMN23215933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729219/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0828914642334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5983238220215 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2545776367188 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817418 SAMN23216585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729220/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6542320251465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.555606842041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5072288513184 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817419 SAMN23215932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729221/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6050434112549 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0710830688477 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9613742828369 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817420 SAMN23216583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729223/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4422702789307 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6146697998047 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4573841094971 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817421 SAMN23216584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729222/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7416496276855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1487216949463 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8087692260742 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817422 SAMN23215931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729224/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0327434539795 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9419021606445 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4121341705322 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817423 SAMN23215209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729225/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4739742279053 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.459358215332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1544628143311 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817424 SAMN23215195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729258/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6147232055664 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5226593017578 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1626625061035 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817425 SAMN23213901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729259/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5265560150146 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5000801086426 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7338466644287 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817426 SAMN23213900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729260/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7582225799561 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7924861907959 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6564235687256 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817427 SAMN23216577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729261/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5995540618896 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7838535308838 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.747673034668 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817428 SAMN23214384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-000729264/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4749326705933 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.408166885376 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5312347412109 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817429 SAMN23215651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000729262/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3104362487793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4909210205078 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0872802734375 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817430 SAMN23215650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000729263/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6300964355469 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6140460968018 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6474208831787 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817431 SAMN23214229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729265/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7111587524414 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3233203887939 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3932838439941 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817432 SAMN23214797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729266/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4459095001221 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.760368347168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3985843658447 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817433 SAMN23213899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729267/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.886251449585 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2002754211426 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7658996582031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817434 SAMN23216576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729268/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2314758300781 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4662647247314 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3044052124023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817435 SAMN23216575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729269/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0209655761719 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.797212600708 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7413520812988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817436 SAMN23215930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729270/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6382923126221 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4721050262451 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.268798828125 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817437 SAMN23216574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729271/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2659702301025 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3477058410645 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9751319885254 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817438 SAMN23214413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000729272/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7413654327393 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8935203552246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5154724121094 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817439 SAMN23214546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000729273/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7599086761475 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8686122894287 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.582649230957 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817440 SAMN23215194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729274/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3220176696777 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.097843170166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8651313781738 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817441 SAMN23215929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729275/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7726669311523 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6665000915527 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4057998657227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817442 SAMN23216573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729276/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 38 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7055568695068 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4882793426514 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3540077209473 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817443 SAMN23214647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729277/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9241008758545 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7739295959473 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4955005645752 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817444 SAMN23213898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729278/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7399787902832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.0412197113037 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.467306137085 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817445 SAMN23215193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729279/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3088035583496 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.409158706665 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1502361297607 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817446 SAMN23217599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729280/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0733489990234 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6971817016602 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2177276611328 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817447 SAMN23215192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729281/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.580924987793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4462261199951 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4580364227295 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817448 SAMN23214228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729282/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2092418670654 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7521934509277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4927368164062 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817449 SAMN23216572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729283/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0650978088379 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0680484771729 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817450 SAMN23217770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000729284/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2348346710205 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.092945098877 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7829074859619 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817451 SAMN23215928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729285/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6343593597412 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6772308349609 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7188529968262 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817452 SAMN23214646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729286/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.9941368103027 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.7101364135742 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.1160545349121 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817453 SAMN23213897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729287/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7227802276611 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7954120635986 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4299144744873 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817454 SAMN23217598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729288/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7890777587891 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5122718811035 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9538402557373 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817455 SAMN23214645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729289/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1737422943115 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3411331176758 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9761371612549 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817456 SAMN23214142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-000730446/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9957103729248 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8376235961914 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4832382202148 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817457 SAMN23215048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730447/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4144477844238 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4539985656738 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2307300567627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817458 SAMN23214770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000730448/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8244380950928 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.876163482666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6013641357422 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817459 SAMN23215643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000730450/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0963726043701 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2771320343018 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.002836227417 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817460 SAMN23216360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730449/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2791557312012 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2424621582031 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7901458740234 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817461 SAMN23214471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000730451/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0032081604004 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3281078338623 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6026287078857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817462 SAMN23213825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730452/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5068397521973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4381771087646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1935901641846 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817463 SAMN23216359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730453/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7609329223633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7447128295898 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6829490661621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817464 SAMN23214850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000730454/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5622272491455 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5049858093262 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4130668640137 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817465 SAMN23215831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730455/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7297649383545 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7290554046631 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5865497589111 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817466 SAMN23216358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730456/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.764009475708 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5335540771484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9563674926758 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817467 SAMN23214598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730458/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.2223224639893 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.1725549697876 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.0727462768555 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817468 SAMN23214599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730457/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3724918365479 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7316799163818 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.863374710083 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817469 SAMN23217547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-000730459/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0781955718994 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7924480438232 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7644538879395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817470 SAMN23216357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730460/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8153476715088 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1044254302979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7136096954346 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817471 SAMN23215047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730462/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9148178100586 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9094715118408 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8734035491943 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817472 SAMN23216356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730461/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7670993804932 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.521598815918 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.840747833252 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817473 SAMN23215830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730463/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0120906829834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8283500671387 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2342433929443 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817474 SAMN23214177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730464/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5943202972412 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6240253448486 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.270206451416 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817475 SAMN23214176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730466/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.373607635498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6438426971436 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3878841400146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817476 SAMN23217766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000730465/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2217979431152 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6732921600342 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3757991790771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817477 SAMN23216355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730467/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.3320779800415 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.687801361084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.2964277267456 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817478 SAMN23215829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730468/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9269161224365 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7756729125977 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4894943237305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817479 SAMN23215046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730470/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4064407348633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.194263458252 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8698596954346 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817480 SAMN23214403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000730469/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3299312591553 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3158950805664 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1591053009033 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817481 SAMN23216354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730471/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3683967590332 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3892478942871 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.037483215332 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817482 SAMN23214597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730472/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0430889129639 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8452568054199 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0111980438232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817483 SAMN23213824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730476/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5432100296021 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.597677230835 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2742614746094 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817484 SAMN23214537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730475/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8405809402466 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7546100616455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4838218688965 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817485 SAMN23214175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730477/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8954887390137 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8808860778809 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7502937316895 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817486 SAMN23216353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730473/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0087623596191 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6663417816162 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0658473968506 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817487 SAMN23214339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726063/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5521144866943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5788230895996 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2735786437988 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817488 SAMN23216352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730478/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.92991065979 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.558069229126 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2052879333496 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817489 SAMN23217559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CT-CDC-STM-000726064/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6757373809814 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4331817626953 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2148189544678 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817490 SAMN23215524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726065/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0785999298096 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4741535186768 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1597652435303 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817491 SAMN23217396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726067/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1760234832764 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4069995880127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1116218566895 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817492 SAMN23217397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726066/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9511280059814 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8420715332031 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7630481719971 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817493 SAMN23217394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726069/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.718656539917 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.917594909668 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5864295959473 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817494 SAMN23217395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726068/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7269706726074 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4285659790039 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3995132446289 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817495 SAMN23214492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000726070/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6506881713867 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6369667053223 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.405252456665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817496 SAMN23217393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726071/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6904449462891 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5320625305176 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5020313262939 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817497 SAMN23215523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726072/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7584743499756 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1231708526611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0338726043701 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817498 SAMN23214056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726073/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7373027801514 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9493503570557 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0293006896973 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817499 SAMN23217392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726074/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4593925476074 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2013530731201 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.781063079834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817500 SAMN23215522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726075/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3431968688965 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6174697875977 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4270648956299 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817501 SAMN23217391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726077/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3388900756836 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9495849609375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9996147155762 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817502 SAMN23215521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726076/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8081169128418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8321800231934 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7222862243652 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817503 SAMN23215520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726078/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1218795776367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0829448699951 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8189525604248 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817504 SAMN23217390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726079/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3986339569092 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3722648620605 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1548862457275 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817505 SAMN23214566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000726080/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8789863586426 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7643451690674 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3879489898682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817506 SAMN23217389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726081/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5565757751465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7074184417725 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1940956115723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817507 SAMN23216139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726082/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4741325378418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3726005554199 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7940654754639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817508 SAMN23214835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000726083/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2807121276855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0751514434814 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7610187530518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817509 SAMN23217388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726084/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8031482696533 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0520572662354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.626802444458 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817510 SAMN23214739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726087/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7528114318848 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8088932037354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7156925201416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817511 SAMN23214055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726085/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3598232269287 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3994579315186 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1724605560303 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817512 SAMN23217387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726086/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.22438621521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.850715637207 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5069370269775 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817513 SAMN23215519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726088/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7852687835693 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7055072784424 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5017223358154 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817514 SAMN23214054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726091/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3767061233521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3970394134521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.126127243042 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817515 SAMN23217645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726092/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6717481613159 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.5374774932861 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0202102661133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817516 SAMN23217386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726093/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.5952348709106 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7437324523926 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5320177078247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817517 SAMN23215518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726094/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1529331207275 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2674331665039 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9651508331299 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817518 SAMN23217385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726102/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4770965576172 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8842010498047 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7482070922852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817519 SAMN23214477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000729360/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3725509643555 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6594696044922 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7198162078857 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817520 SAMN23216552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729361/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3170280456543 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.206823348999 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8279514312744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817521 SAMN23215517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726095/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8261032104492 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9392681121826 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7112312316895 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817522 SAMN23214129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000729363/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1359443664551 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4879207611084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4381561279297 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817523 SAMN23213891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729364/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6992244720459 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5999622344971 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4120979309082 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817524 SAMN23216551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729362/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3242073059082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2747344970703 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1446533203125 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817526 SAMN23216550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729365/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3580417633057 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2696571350098 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4644966125488 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817527 SAMN23216549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729368/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6428279876709 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5329113006592 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3887004852295 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817528 SAMN23215916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729367/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1224155426025 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2288093566895 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7622623443604 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817529 SAMN23215178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729369/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3334255218506 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3620128631592 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3569068908691 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817530 SAMN23214222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729370/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2153663635254 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6900787353516 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4309253692627 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817531 SAMN23215177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729371/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1963539123535 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.618371963501 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4852333068848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817532 SAMN23216548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729373/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1757392883301 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3573722839355 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1615791320801 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817533 SAMN23213890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729372/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3834209442139 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8681468963623 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5627269744873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817534 SAMN23215915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729374/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8595085144043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5854511260986 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4887523651123 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817535 SAMN23216547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729375/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.314208984375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1152858734131 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1114463806152 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817536 SAMN23215914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729376/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3940277099609 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4803638458252 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4366054534912 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817537 SAMN23216546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729377/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4735717773438 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.676477432251 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.610559463501 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817538 SAMN23216545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729378/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3686485290527 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0781669616699 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0297336578369 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817539 SAMN23216543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729380/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.158088684082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.953634262085 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7883033752441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817540 SAMN23216542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729381/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6546020507812 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3667335510254 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8325958251953 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817541 SAMN23216544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729379/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1152687072754 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6203060150146 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3565006256104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817542 SAMN23214641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729382/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9193229675293 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2707481384277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.834228515625 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817543 SAMN23216541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729383/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.730676651001 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.183422088623 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2784805297852 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817544 SAMN23214434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000729384/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.77414894104 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5020885467529 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.420539855957 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817545 SAMN23215176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729385/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1455078125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.388111114502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2045955657959 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817525 SAMN23215179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729366/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6734809875488 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7078170776367 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4610633850098 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817546 SAMN23216540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729386/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2085952758789 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2076530456543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.856294631958 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817547 SAMN23216539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729387/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7887420654297 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1420154571533 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8253498077393 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817548 SAMN23216538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729388/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2502574920654 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2017345428467 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7284049987793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817549 SAMN23215174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729391/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3128070831299 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8383865356445 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6927185058594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817550 SAMN23214794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729389/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.812572479248 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7226734161377 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4898815155029 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817551 SAMN23215175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729390/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8361415863037 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8824615478516 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.704216003418 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817552 SAMN23214170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730621/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3142204284668 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2789497375488 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8339099884033 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817553 SAMN23216314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730622/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6792182922363 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5866012573242 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3274631500244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817554 SAMN23215810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730623/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.624813079834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.453649520874 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0482997894287 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817555 SAMN23216313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730624/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.6744422912598 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.4132394790649 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 12.8232564926147 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817556 SAMN23217574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730626/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9730968475342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8303260803223 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7479934692383 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817557 SAMN23215809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730625/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2418403625488 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8248424530029 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5939826965332 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817558 SAMN23216312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730627/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6085643768311 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2582378387451 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8397407531738 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817559 SAMN23215808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730628/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1815185546875 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7104110717773 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5995426177979 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817560 SAMN23213773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000730629/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7900991439819 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.81955909729 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5150661468506 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817561 SAMN23214502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000730630/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6110858917236 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.716760635376 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5250282287598 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817562 SAMN23216311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730631/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9589557647705 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7817707061768 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3472957611084 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817563 SAMN23216310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730632/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5826091766357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3553771972656 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8394336700439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817564 SAMN23215807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730634/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5748100280762 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4516830444336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0333118438721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817565 SAMN23214849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000730633/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0010318756104 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5885257720947 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0724105834961 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817566 SAMN23214535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730635/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7511386871338 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9613304138184 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7156085968018 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817567 SAMN23214585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730636/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5831775665283 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.430591583252 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8363666534424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817568 SAMN23216309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730638/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3952960968018 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6956748962402 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3788051605225 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817569 SAMN23215806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730637/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3457660675049 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1274433135986 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8974533081055 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817570 SAMN23217573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730639/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0050678253174 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.12158203125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8078441619873 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817571 SAMN23214584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730640/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2027130126953 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.256799697876 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2046356201172 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817572 SAMN23215028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730642/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7335262298584 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9344215393066 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4808616638184 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817573 SAMN23215027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730643/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7854309082031 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5594692230225 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3465347290039 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817574 SAMN23217669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730644/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.4293298721313 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.6037530899048 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.5461740493774 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817575 SAMN23215688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/HI-CDC-STM-000730641/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2898292541504 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3407421112061 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0940284729004 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817576 SAMN23214169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730646/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5274486541748 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4483909606934 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5457172393799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817577 SAMN23216308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730647/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9805107116699 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1809978485107 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1848125457764 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817578 SAMN23217668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730645/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7036743164062 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.5833415985107 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3507680892944 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817579 SAMN23215744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730648/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 25.707010269165 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2383728027344 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0393886566162 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817580 SAMN23217560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000730650/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5640649795532 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.5833587646484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1885261535645 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817581 SAMN23215026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730649/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8791236877441 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8178863525391 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3699512481689 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817582 SAMN23215696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GU-CDC-STM-000730651/2021 collected_by 'Helix' collection_date 2021-09-06 isolation_source nasal swab geo_loc_name USA: Guam host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4792976379395 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2903785705566 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3140316009521 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817583 SAMN23214950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000724102/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.6957378387451 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.3244714736938 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.0999841690063 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817584 SAMN23215639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724103/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5221195220947 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5268878936768 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3951835632324 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817585 SAMN23217546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724104/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1589736938477 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6653614044189 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7164344787598 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817586 SAMN23213808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730652/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.686450958252 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1792144775391 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6842727661133 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817587 SAMN23214104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724105/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7595958709717 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6491107940674 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7404365539551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817588 SAMN23216526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729434/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.2203903198242 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.0883464813232 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.9492492675781 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817589 SAMN23215162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729435/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.7956123352051 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.8155746459961 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.5950870513916 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817590 SAMN23215912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729436/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0646743774414 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.8455181121826 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.4810314178467 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817591 SAMN23215161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729437/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.9059581756592 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 32.269229888916 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 31.7300720214844 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817592 SAMN23216525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729438/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.7809505462646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.8660583496094 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.8333435058594 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817593 SAMN23214638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729440/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.7951717376709 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.3014469146729 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.7817344665527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817594 SAMN23216524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729439/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0395355224609 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.240213394165 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.8580513000488 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817595 SAMN23216523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729441/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.7508945465088 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.5370483398438 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.2209224700928 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817596 SAMN23215911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729442/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.6788139343262 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.8171806335449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.7561264038086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817597 SAMN23217693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729444/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.6996765136719 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.8393478393555 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.5305004119873 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817598 SAMN23215160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729445/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.5012912750244 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.1090469360352 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.6216239929199 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817599 SAMN23214220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729446/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.8148803710938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.4832592010498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.164249420166 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817600 SAMN23215910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729447/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.7688236236572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.8497314453125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.3432464599609 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817601 SAMN23216521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729449/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.756103515625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.0977821350098 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.6483898162842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817602 SAMN23216522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729448/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.3916873931885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.4586505889893 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.837459564209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817603 SAMN23215909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729450/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.7736434936523 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.4633121490479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.8366985321045 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817604 SAMN23214637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729451/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.9588394165039 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.8264045715332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.4312610626221 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817605 SAMN23215159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729452/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.6358661651611 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.5530281066895 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.2759208679199 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817606 SAMN23215908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729453/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.7336711883545 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.7057609558105 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.9767723083496 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817607 SAMN23215907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729455/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.7257785797119 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7936496734619 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.4600944519043 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817608 SAMN23216519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729456/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.2922801971436 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7995376586914 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.2415962219238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817609 SAMN23216520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729454/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.1684379577637 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.7607231140137 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.121997833252 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817610 SAMN23215906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729457/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.4607696533203 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.0477676391602 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.745433807373 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817611 SAMN23215905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729458/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.7446632385254 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.5330791473389 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.7733917236328 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817612 SAMN23215904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729459/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.8473682403564 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.4517879486084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.6314830780029 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817613 SAMN23215649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000729461/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.7501792907715 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7850608825684 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.4690704345703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817614 SAMN23217595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729460/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.6323051452637 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.9512634277344 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.1215400695801 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817615 SAMN23216518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729462/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.732063293457 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.4751472473145 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.6485328674316 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817616 SAMN23216517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729463/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.5787811279297 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.2847747802734 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.4459457397461 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817617 SAMN23216516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729464/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.7630310058594 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.8059940338135 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.7900524139404 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817618 SAMN23215903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729465/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.424596786499 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.5338687896729 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.2303028106689 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817619 SAMN23216019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727979/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0088291168213 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4532642364502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4437694549561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817620 SAMN23216515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729466/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.0238952636719 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.3451404571533 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.0611667633057 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817621 SAMN23216018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727980/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6960067749023 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8338737487793 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6565475463867 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817622 SAMN23214511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000727982/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2655048370361 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6534461975098 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2245998382568 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817623 SAMN23217715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727983/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8175048828125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3150215148926 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3476314544678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817624 SAMN23216782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727984/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5601024627686 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4565830230713 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2230854034424 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817625 SAMN23216017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727985/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5020713806152 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3641986846924 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9628353118896 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817626 SAMN23216781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727986/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7084522247314 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6572132110596 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4129810333252 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817627 SAMN23217714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727988/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4494113922119 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5391178131104 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1478862762451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817628 SAMN23216780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727989/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5670471191406 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0365715026855 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9775581359863 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817629 SAMN23216779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727990/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5152397155762 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.837589263916 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1241092681885 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817630 SAMN23217713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727991/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2499961853027 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8056449890137 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5672035217285 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817631 SAMN23216778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727992/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9772996902466 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.9646244049072 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.6179637908936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817632 SAMN23215319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727994/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6596488952637 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2355041503906 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9976024627686 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817633 SAMN23215320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727993/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7822494506836 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7713871002197 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6210632324219 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817634 SAMN23216777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727995/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4302558898926 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7139682769775 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6541233062744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817635 SAMN23216776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728002/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7927017211914 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7110137939453 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3774967193604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817636 SAMN23214510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000728003/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0058479309082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.827522277832 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.553840637207 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817637 SAMN23213970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728005/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7219982147217 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0761871337891 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8068656921387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817638 SAMN23217712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728004/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9702062606812 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7033138275146 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7330303192139 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817639 SAMN23216775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728006/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6565799713135 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.828145980835 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2586097717285 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817640 SAMN23213969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728007/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4403591156006 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6736488342285 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4591960906982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817641 SAMN23216774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728008/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9562320709229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4845867156982 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7631988525391 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817642 SAMN23215318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728010/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.678674697876 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6334037780762 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3320636749268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817643 SAMN23215317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728011/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7607383728027 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.58909034729 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4656848907471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817644 SAMN23216016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728013/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7575569152832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9901161193848 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7099380493164 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817645 SAMN23216773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728012/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7229862213135 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5780429840088 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3384819030762 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817646 SAMN23216772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728014/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4422788619995 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6171932220459 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6624374389648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817647 SAMN23216015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728015/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4352169036865 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.035551071167 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0682277679443 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817648 SAMN23213968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728016/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0749282836914 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7885799407959 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6145801544189 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817649 SAMN23213967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728018/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.273458480835 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3692016601562 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0382251739502 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817650 SAMN23215316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728017/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5536975860596 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0848484039307 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7492160797119 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817651 SAMN23215315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728019/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2065582275391 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5864162445068 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3220977783203 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817652 SAMN23214993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730826/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8515129089355 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8224792480469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5222110748291 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817653 SAMN23217665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730827/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6298694610596 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7540111541748 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0463943481445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817654 SAMN23214532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730829/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7586765289307 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5747127532959 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9302234649658 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817655 SAMN23215713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730828/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.481502532959 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5832538604736 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1787395477295 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817656 SAMN23215641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000730830/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4915571212769 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0906600952148 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7453470230103 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817657 SAMN23217570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730831/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6360111236572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6073017120361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3090038299561 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817658 SAMN23215712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730832/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7662353515625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4757232666016 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7906646728516 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817659 SAMN23214120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000730834/2021 collected_by 'Helix' collection_date 2021-09-06 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7171573638916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0073528289795 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7356224060059 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817660 SAMN23213796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730835/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5968627929688 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.457706451416 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2413425445557 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817661 SAMN23214992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730833/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.827579498291 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1971492767334 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.933895111084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817662 SAMN23216264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730836/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4078388214111 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5076274871826 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2399787902832 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817663 SAMN23217281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726702/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3856544494629 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4223480224609 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0831165313721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817664 SAMN23213795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730837/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7557525634766 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7841720581055 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5065269470215 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817665 SAMN23214023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726705/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3131408691406 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5693778991699 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2958946228027 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817666 SAMN23216097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726704/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9534587860107 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0516624450684 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5828514099121 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817667 SAMN23217280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726703/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5369968414307 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3421421051025 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2274208068848 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817668 SAMN23215297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728586/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3856792449951 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6092586517334 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1138401031494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817669 SAMN23216005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728588/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 31.6780109405518 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2146797180176 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8122100830078 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817670 SAMN23215296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728589/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5339107513428 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.455940246582 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3774108886719 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817671 SAMN23215295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728590/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5373210906982 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8871517181396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5942897796631 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817672 SAMN23215293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728592/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.5095119476318 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7191095352173 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.6432037353516 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817673 SAMN23215294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728591/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7857398986816 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6008548736572 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1195049285889 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817674 SAMN23215292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728593/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6735916137695 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4270610809326 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0671310424805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817675 SAMN23216744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728602/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7601585388184 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0754108428955 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8496932983398 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817676 SAMN23214682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728594/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8226661682129 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8062133789062 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7783470153809 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817677 SAMN23215291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728595/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4452457427979 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7959117889404 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0966148376465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817678 SAMN23216004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728603/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8956050872803 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5976047515869 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5561904907227 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817679 SAMN23216743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728605/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2739295959473 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.470890045166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0296993255615 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817680 SAMN23217710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728604/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.020299911499 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2335224151611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8303852081299 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817681 SAMN23216003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728608/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.707368850708 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1071014404297 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8100452423096 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817682 SAMN23217709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728607/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6093893051147 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4739933013916 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2963104248047 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817683 SAMN23217614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728609/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0742797851562 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6295948028564 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.573263168335 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817684 SAMN23216742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728606/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8325996398926 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.73996925354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7752895355225 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817685 SAMN23214681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728610/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4126205444336 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4288272857666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.8416309356689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817686 SAMN23217708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728611/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2526054382324 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8302345275879 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2247009277344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817687 SAMN23215290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728612/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8900508880615 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8380947113037 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8137989044189 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817688 SAMN23216741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728613/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3361492156982 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4512481689453 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2487564086914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817689 SAMN23214111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000728615/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9544086456299 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8580303192139 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7345180511475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817690 SAMN23213953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728616/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7058601379395 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.5245933532715 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3385324478149 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817691 SAMN23215289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728614/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4018001556396 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1931114196777 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8400077819824 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817692 SAMN23214263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728617/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9088258743286 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6142692565918 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6037216186523 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817693 SAMN23214815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728620/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1761150360107 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9771537780762 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9012222290039 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817694 SAMN23216740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728619/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2428188323975 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6880207061768 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.284782409668 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817695 SAMN23216002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728622/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7045402526855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0338649749756 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1713829040527 lineage/clade name P.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817696 SAMN23216739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728621/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0673065185547 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.782901763916 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2986259460449 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817697 SAMN23216737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728624/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.0914888381958 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.2509994506836 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.2143449783325 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817698 SAMN23216738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728623/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5800685882568 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5301628112793 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1452827453613 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817699 SAMN23215881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729849/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5928859710693 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5167503356934 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3904285430908 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817700 SAMN23216001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728625/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9852066040039 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1526012420654 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1979103088379 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817701 SAMN23213873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729850/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0094966888428 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.962739944458 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6412315368652 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817702 SAMN23214211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729851/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5576629638672 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4388980865479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.730993270874 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817703 SAMN23216467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729852/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2171096801758 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3839530944824 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.111198425293 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817704 SAMN23213872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729853/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1762371063232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4061450958252 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.067533493042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817705 SAMN23215145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729854/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0913238525391 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0653343200684 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8071956634521 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817706 SAMN23215880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729855/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6605110168457 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4266872406006 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1176891326904 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817707 SAMN23215144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729856/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2620372772217 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0449600219727 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8308219909668 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817708 SAMN23215879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729857/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1852378845215 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.990327835083 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7694244384766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817709 SAMN23216466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729858/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9615249633789 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8636417388916 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7137928009033 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817710 SAMN23216465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729859/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.315258026123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.059757232666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8930110931396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817711 SAMN23215143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729860/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0694046020508 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2270240783691 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7235927581787 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817712 SAMN23213870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729862/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7688217163086 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0633430480957 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4840278625488 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817713 SAMN23213871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729861/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0196361541748 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8037528991699 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2984066009521 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817714 SAMN23215878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729863/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2379837036133 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7522735595703 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.405797958374 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817715 SAMN23216464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729864/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9231128692627 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9049167633057 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7072601318359 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817716 SAMN23217684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729866/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5416774749756 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5210628509521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4625873565674 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817717 SAMN23214409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000729865/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8926086425781 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.784797668457 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5580062866211 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817718 SAMN23215648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000729867/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2458839416504 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.9749183654785 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.8309650421143 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817719 SAMN23215142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729868/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2054710388184 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.790735244751 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8296737670898 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817720 SAMN23214210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729870/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7286472320557 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.6401615142822 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.4781017303467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817721 SAMN23215141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729869/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1932029724121 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4106121063232 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7288131713867 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817722 SAMN23217768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000729871/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7916526794434 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8471870422363 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6834182739258 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817723 SAMN23214106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000729872/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4272966384888 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3184719085693 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7667541503906 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817724 SAMN23213869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729873/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.536319732666 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9240684509277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8221416473389 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817725 SAMN23215140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729874/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4724388122559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7949562072754 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5456390380859 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817726 SAMN23216462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729876/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8977870941162 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0576553344727 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.827278137207 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817727 SAMN23213867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729878/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2025852203369 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0240459442139 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6822566986084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817728 SAMN23216463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729875/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9481172561646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6348991394043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2660083770752 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817729 SAMN23215702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000731187/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5966567993164 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0618019104004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8302268981934 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817730 SAMN23213868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729877/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2121105194092 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0710334777832 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1574516296387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817731 SAMN23216461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729879/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7621059417725 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5970935821533 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6633949279785 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817732 SAMN23214498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NE-CDC-STM-000729880/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7009429931641 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7722473144531 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6052894592285 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817733 SAMN23214500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000731188/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9889335632324 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1777000427246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7212753295898 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817734 SAMN23214148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000731189/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7905979156494 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8069171905518 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5896282196045 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817735 SAMN23214396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000731190/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8910083770752 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8542976379395 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.654670715332 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817736 SAMN23216217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731192/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2356843948364 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5417556762695 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1901588439941 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817737 SAMN23215700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000731193/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9797229766846 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0011730194092 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8093605041504 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817738 SAMN23215701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000731191/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.23122215271 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1266975402832 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4410648345947 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817739 SAMN23216216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000731194/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.693826675415 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.78977394104 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.677318572998 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817740 SAMN23215699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000731195/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8076171875 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0049457550049 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7312660217285 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817741 SAMN23215280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728692/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3572273254395 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4134254455566 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1320915222168 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817742 SAMN23216711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728693/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4886283874512 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6043605804443 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.123197555542 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817743 SAMN23216710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728694/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2157402038574 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4055633544922 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9843082427979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817744 SAMN23213944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728702/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8154582977295 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8071575164795 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6391658782959 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817745 SAMN23217612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728695/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7557392120361 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8160228729248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7420978546143 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817746 SAMN23214261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728703/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6921272277832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6280193328857 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4016933441162 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817747 SAMN23215986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728704/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6966667175293 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5247135162354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7179107666016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817748 SAMN23214814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728705/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0290298461914 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9254093170166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8182945251465 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817749 SAMN23216709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728707/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6766662597656 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2501945495605 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0128574371338 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817750 SAMN23214677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728706/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.283670425415 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8362121582031 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.753662109375 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817751 SAMN23216708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728709/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7852573394775 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8261165618896 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7185344696045 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817752 SAMN23215985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728712/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6466360092163 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.5306453704834 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1732692718506 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817753 SAMN23216707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728710/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6971588134766 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.821870803833 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6671047210693 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817754 SAMN23213943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728708/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7904624938965 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2114124298096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7450294494629 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817755 SAMN23215278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728713/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7237777709961 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1919956207275 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8065357208252 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817756 SAMN23215277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728715/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5406494140625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8361778259277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8894538879395 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817757 SAMN23214676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728714/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8643455505371 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8341827392578 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5048980712891 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817758 SAMN23213942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728716/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9711818695068 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1302299499512 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9009037017822 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817759 SAMN23214960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000728717/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6500682830811 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8250141143799 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7441635131836 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817760 SAMN23215276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728718/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9230003356934 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8135395050049 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6008777618408 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817761 SAMN23214813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728719/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8756351470947 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8125648498535 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5564022064209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817762 SAMN23214260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728721/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.658031463623 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3245525360107 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.271125793457 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817763 SAMN23215984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728720/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7674007415771 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7590847015381 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5022754669189 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817764 SAMN23215275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728722/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4252738952637 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4200019836426 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1627502441406 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817765 SAMN23215279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728711/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8264980316162 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8296585083008 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5461902618408 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817766 SAMN23214555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000728723/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3823223114014 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.421365737915 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8191871643066 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817767 SAMN23214812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728725/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6598281860352 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8563537597656 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.770975112915 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817768 SAMN23214675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728724/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8971424102783 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8391761779785 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6121997833252 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817769 SAMN23213941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728726/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3721704483032 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2256832122803 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1044292449951 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817770 SAMN23214554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000728728/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6035461425781 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3374176025391 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9475002288818 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817771 SAMN23214259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728727/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5484085083008 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.6981887817383 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.0682754516602 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817772 SAMN23214258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728729/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1374835968018 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0855407714844 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.6758594512939 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817773 SAMN23217520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724310/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.433256149292 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8028011322021 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2608642578125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817774 SAMN23217519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724311/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6052112579346 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6546249389648 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1970024108887 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817775 SAMN23217518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724312/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8891792297363 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4938106536865 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1651420593262 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817776 SAMN23217658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000724314/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2589569091797 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3967895507812 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9516334533691 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817777 SAMN23217517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724313/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3450241088867 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9322319030762 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.764440536499 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817778 SAMN23217657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000724315/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7284374237061 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7751541137695 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3042678833008 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817779 SAMN23217516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724316/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4331474304199 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6476821899414 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3159999847412 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817780 SAMN23214763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724317/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8388366699219 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.667350769043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3962535858154 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817781 SAMN23214096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724318/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1474571228027 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.174617767334 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5871829986572 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817782 SAMN23214448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000724320/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3331203460693 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0528354644775 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6749267578125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817783 SAMN23214371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724319/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2331390380859 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6109371185303 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5324153900146 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817784 SAMN23215621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724321/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2206478118896 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.9333715438843 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7853832244873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817785 SAMN23216197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724322/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5600833892822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8310451507568 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4629802703857 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817786 SAMN23215620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724325/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2289924621582 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1030788421631 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7657413482666 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817787 SAMN23214572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000724323/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4300680160522 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6107387542725 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7639503479004 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817788 SAMN23216196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724324/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0411186218262 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9402027130127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8330459594727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817789 SAMN23214095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724326/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.1169843673706 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.2734403610229 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.9774303436279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817790 SAMN23217758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000724328/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9097194671631 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1124210357666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8739852905273 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817791 SAMN23217656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000724329/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.4468202590942 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.1344699859619 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.5433044433594 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817792 SAMN23217759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000724327/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8620939254761 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.5569047927856 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.4403295516968 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817793 SAMN23215619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724330/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9412899017334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1113605499268 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6852474212646 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817794 SAMN23217655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000724331/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0061616897583 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3233833312988 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.8608770370483 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817795 SAMN23217515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724332/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4228744506836 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.592077255249 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2430152893066 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817796 SAMN23217513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724335/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6133346557617 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2292804718018 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4411144256592 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817797 SAMN23215618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724333/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3313884735107 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1115779876709 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4863147735596 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817798 SAMN23217514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724334/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2668075561523 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4954128265381 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9840393066406 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817799 SAMN23216195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724337/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7422828674316 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7571849822998 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4597778320312 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817800 SAMN23215617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724336/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.7587995529175 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.5310640335083 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.2293996810913 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817801 SAMN23217512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724338/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0644989013672 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8552331924438 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7823638916016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817802 SAMN23217511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724339/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.833740234375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8345050811768 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7388725280762 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817803 SAMN23217510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724340/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3943405151367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1372585296631 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9423809051514 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817804 SAMN23215616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724341/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9513969421387 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.08327293396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1842384338379 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817805 SAMN23217272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726738/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7237739562988 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7914543151855 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5646305084229 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817806 SAMN23217627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726739/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6805248260498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7606105804443 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4631042480469 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817807 SAMN23214306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726740/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0485324859619 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5276031494141 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.307975769043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817808 SAMN23215450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726741/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7193088531494 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1840896606445 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5609722137451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817809 SAMN23215449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726743/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9923496246338 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4814033508301 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.268871307373 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817810 SAMN23216095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726742/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8286962509155 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.7885751724243 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.6521053314209 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817811 SAMN23215448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726744/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5178527832031 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0599231719971 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8348007202148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817812 SAMN23217626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726745/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7625370025635 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3947868347168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8772144317627 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817813 SAMN23214720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726746/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.823974609375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1432132720947 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7332630157471 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817814 SAMN23215447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726747/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6376132965088 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4694881439209 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2797145843506 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817815 SAMN23217271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726748/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3787097930908 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5404968261719 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2981128692627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817816 SAMN23217270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726751/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9280738830566 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5730857849121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7431201934814 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817817 SAMN23215446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726750/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7967376708984 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7973537445068 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6137542724609 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817818 SAMN23214019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726749/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3254623413086 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1648063659668 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9615650177002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817819 SAMN23214018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726752/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7107334136963 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.684606552124 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3321342468262 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817820 SAMN23216094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726753/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1467094421387 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8019237518311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7767009735107 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817821 SAMN23217269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726754/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9222354888916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8401775360107 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6726417541504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817822 SAMN23214305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726755/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.1442909240723 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0373020172119 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7925548553467 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817823 SAMN23214017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726756/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4014320373535 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4301166534424 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2894191741943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817824 SAMN23217268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726757/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1369476318359 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.955394744873 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7681674957275 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817825 SAMN23215445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726758/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4122638702393 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1487121582031 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9396781921387 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817826 SAMN23217267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726760/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1163997650146 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3643817901611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.973030090332 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817827 SAMN23215444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726759/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4933795928955 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.766471862793 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5589485168457 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817828 SAMN23217266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726761/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4013175964355 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7793216705322 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4012393951416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817829 SAMN23214016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726762/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.447998046875 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4883441925049 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4418888092041 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817830 SAMN23217265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726763/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9359130859375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1362209320068 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7694816589355 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817831 SAMN23214015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726764/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1141319274902 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0909519195557 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8190765380859 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817832 SAMN23215443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726765/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8413429260254 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0643711090088 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.6830215454102 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817833 SAMN23217264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726766/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8217163085938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.7312030792236 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.3767414093018 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817834 SAMN23217263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726767/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2278251647949 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5625534057617 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5013999938965 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817835 SAMN23215442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726768/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0010643005371 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7154445648193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6103496551514 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817836 SAMN23217262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726769/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1866149902344 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8794708251953 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4608020782471 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817837 SAMN23215971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728863/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.3433685302734 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.7570495605469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.4881286621094 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817838 SAMN23216686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728864/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.4750843048096 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.8106594085693 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.2974910736084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817839 SAMN23215970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728866/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.3376998901367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.5685138702393 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.3995323181152 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817840 SAMN23216685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728868/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.5320796966553 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.7950496673584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.1102333068848 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817841 SAMN23215253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728870/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.5290622711182 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.4384517669678 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.9778423309326 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817842 SAMN23215969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728871/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.6373062133789 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.5963020324707 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.0256500244141 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817843 SAMN23217774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000728872/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.9019222259521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.0834445953369 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.621524810791 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817844 SAMN23214249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728875/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.5535755157471 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.6705322265625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.968578338623 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817845 SAMN23216684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728879/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.1557235717773 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.6223545074463 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.2624320983887 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817846 SAMN23215968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728878/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.291145324707 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.0262851715088 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.7190017700195 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817847 SAMN23214552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000728880/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.3297939300537 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.2259368896484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.8356952667236 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817848 SAMN23217609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728881/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 29.8382797241211 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 31.1406078338623 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 30.2311305999756 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817849 SAMN23215967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728887/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.1416263580322 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.418493270874 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.179573059082 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817850 SAMN23216683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728884/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 28.0598106384277 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 29.7419567108154 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.7961387634277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817851 SAMN23214807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728888/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 30.7395057678223 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 32.1017150878906 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 31.0290260314941 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817852 SAMN23216682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728892/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.0200080871582 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.4682426452637 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.913761138916 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817853 SAMN23216681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728893/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 27.6090984344482 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 30.7937030792236 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 29.6647491455078 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817854 SAMN23217703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728902/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1188716888428 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8199520111084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6693897247314 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817855 SAMN23214248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728903/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.3234186172485 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.9960222244263 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.1522397994995 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817856 SAMN23214247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728904/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.5060968399048 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.4518365859985 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.9803791046143 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817857 SAMN23213929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728905/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6082820892334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1267833709717 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7911357879639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817858 SAMN23217608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728906/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.507999420166 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5598087310791 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4070796966553 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817859 SAMN23217607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728907/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4532413482666 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1329765319824 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7560405731201 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817860 SAMN23217702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728908/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6273212432861 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6733512878418 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3328876495361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817861 SAMN23217701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728909/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4379940032959 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8068046569824 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.9371337890625 lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817862 SAMN23217606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728911/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7129364013672 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7667675018311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7358665466309 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817863 SAMN23217700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728910/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5947818756104 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9525127410889 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6059131622314 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817864 SAMN23217605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728912/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7939987182617 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.920934677124 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6461658477783 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817865 SAMN23217699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728913/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2811107635498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.8157081604004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.2324104309082 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817866 SAMN23217698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728914/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.313793182373 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9797744750977 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7718677520752 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817867 SAMN23217604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728916/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5062026977539 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.1690673828125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7450523376465 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817868 SAMN23215659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000728915/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3005065917969 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1986656188965 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7374706268311 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817869 SAMN23215600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724449/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5257434844971 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5671348571777 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2859077453613 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817870 SAMN23215601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724448/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8854103088379 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7308464050293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.798698425293 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817871 SAMN23217485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724450/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7562732696533 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.642541885376 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.535177230835 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817872 SAMN23215599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724451/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5426177978516 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.764102935791 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3891010284424 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817873 SAMN23214088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724452/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8966264724731 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.74462890625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5551013946533 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817874 SAMN23217484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724454/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7251930236816 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3311614990234 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3023433685303 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817875 SAMN23216184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724453/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6492557525635 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5936069488525 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5085563659668 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817876 SAMN23217483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724455/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3146438598633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3034515380859 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2730255126953 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817877 SAMN23216183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724456/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2669830322266 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1847114562988 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0767879486084 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817878 SAMN23215598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724458/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5857105255127 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4496116638184 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2629451751709 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817879 SAMN23217482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724457/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3837432861328 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5328540802002 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.015926361084 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817880 SAMN23216182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724459/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.85560131073 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.8103218078613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.5335216522217 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817881 SAMN23215597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724460/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8185157775879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0296077728271 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7173728942871 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817882 SAMN23215596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724461/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2558517456055 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3774147033691 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0327072143555 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817883 SAMN23215595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724462/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.4539203643799 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.9483652114868 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.768609046936 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817884 SAMN23214942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000724463/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8990516662598 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6245651245117 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5145416259766 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817885 SAMN23215594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724465/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6683139801025 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5841369628906 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4228820800781 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817886 SAMN23216181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724464/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.242091178894 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.5757656097412 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.17653465271 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817887 SAMN23216180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724466/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7798347473145 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3916282653809 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1214504241943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817888 SAMN23214758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724467/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.093620300293 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2379913330078 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7807559967041 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817889 SAMN23214087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724468/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7578430175781 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8832836151123 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6150608062744 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817890 SAMN23217481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724470/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.537260055542 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8358364105225 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7756175994873 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817891 SAMN23215593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724469/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.7766208648682 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.0778312683105 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.7794628143311 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817892 SAMN23216179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724471/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6326789855957 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.789400100708 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4190235137939 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817893 SAMN23217480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724472/2021 collected_by 'Helix' collection_date 2021-08-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3212280273438 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6476020812988 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1748275756836 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817894 SAMN23215592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724473/2021 collected_by 'Helix' collection_date 2021-08-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1495189666748 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5326499938965 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0459384918213 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817895 SAMN23215591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724474/2021 collected_by 'Helix' collection_date 2021-08-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8026390075684 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5509662628174 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4515209197998 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817896 SAMN23214496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000724477/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.3322286605835 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.4614276885986 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.4159326553345 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817897 SAMN23215590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724476/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5109977722168 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.568021774292 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8382015228271 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817898 SAMN23214844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000724475/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.487889289856 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.6641883850098 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3613424301147 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817899 SAMN23214517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000724478/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7554302215576 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1026821136475 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6643295288086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817900 SAMN23214570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000724479/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4677753448486 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.5028953552246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2794303894043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817901 SAMN23215441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726770/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4513568878174 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3752727508545 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4460735321045 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817902 SAMN23217261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726771/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6984004974365 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5662078857422 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2773342132568 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817903 SAMN23214304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726772/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1106033325195 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1168117523193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8102550506592 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817904 SAMN23214014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726773/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8989391326904 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0907115936279 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.865291595459 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817905 SAMN23214719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726775/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4636859893799 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9884872436523 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7567043304443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817906 SAMN23217260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726776/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4756927490234 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3784980773926 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1922588348389 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817907 SAMN23217625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726774/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.382007598877 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2877559661865 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1806945800781 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817908 SAMN23217259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726777/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1687126159668 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0929470062256 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7455158233643 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817909 SAMN23215440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726778/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2147941589355 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5608730316162 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2903804779053 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817910 SAMN23217258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726779/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9354228973389 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8211307525635 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8116855621338 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817911 SAMN23215439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726780/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.3993835449219 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.2043256759644 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.7353258132935 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817912 SAMN23215438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726783/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7895030975342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.6506700515747 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3754568099976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817913 SAMN23214718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726781/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9605550765991 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7482299804688 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7762746810913 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817914 SAMN23215437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726784/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7580604553223 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.615198135376 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7535800933838 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817915 SAMN23216093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726782/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9348392486572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1108283996582 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7453155517578 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817916 SAMN23217624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726785/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1429634094238 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2971744537354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8151340484619 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817917 SAMN23215436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726786/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7898464202881 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7153072357178 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5541553497314 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817918 SAMN23217257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726787/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5564231872559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3024520874023 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2606525421143 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817919 SAMN23217256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726789/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2606620788574 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5912437438965 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3430080413818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817920 SAMN23215673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726788/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8452091217041 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7691535949707 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.6454429626465 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817921 SAMN23214013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726791/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6624450683594 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8601264953613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8378849029541 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817922 SAMN23216092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726792/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3193435668945 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2606868743896 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8556098937988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817923 SAMN23214717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726793/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1968746185303 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1166973114014 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7985668182373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817924 SAMN23214716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726794/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7621269226074 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8812046051025 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8059959411621 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817925 SAMN23217255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726902/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3520221710205 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7853775024414 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3916893005371 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817926 SAMN23216091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726903/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3938751220703 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4106750488281 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1511783599854 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817927 SAMN23217733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726904/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0532741546631 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6288528442383 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.378791809082 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817928 SAMN23217254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726905/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7461681365967 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5114288330078 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5138034820557 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817929 SAMN23217253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726906/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7081508636475 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6351165771484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3767776489258 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817930 SAMN23217252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726907/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2489223480225 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.445837020874 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1905555725098 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817931 SAMN23217732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726908/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0994701385498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0433902740479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0699672698975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817932 SAMN23217731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726909/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4697818756104 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4865112304688 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2258186340332 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817933 SAMN23213853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730106/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0411205291748 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.827054977417 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7153549194336 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817934 SAMN23215871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730107/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.7636156082153 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.8706436157227 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.7363891601562 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817935 SAMN23216439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730108/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4080753326416 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4547462463379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0268325805664 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817936 SAMN23214126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000730111/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0512104034424 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7970638275146 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8086643218994 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817937 SAMN23213852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730109/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2488994598389 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5236492156982 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2556800842285 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817938 SAMN23216438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730110/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8744449615479 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7536735534668 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3801383972168 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817939 SAMN23214542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730112/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7781171798706 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1605186462402 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6391944885254 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817940 SAMN23213851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730113/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8191661834717 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4316024780273 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2552452087402 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817941 SAMN23214202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730114/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6983833312988 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3771648406982 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0029277801514 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817942 SAMN23216437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730115/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0420532226562 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7545318603516 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4491577148438 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817943 SAMN23216436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730116/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7963485717773 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8282794952393 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8296852111816 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817944 SAMN23214201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730118/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7120399475098 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7191753387451 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6428146362305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817945 SAMN23213850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730117/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1978302001953 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2248973846436 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0404357910156 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817946 SAMN23217549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-000730119/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2386627197266 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6838645935059 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6825256347656 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817947 SAMN23214621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730120/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.275092124939 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2079448699951 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9134798049927 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817948 SAMN23214619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730122/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.9134340286255 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.2470569610596 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.9764547348022 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817949 SAMN23214620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730121/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7778491973877 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6503658294678 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3693389892578 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817950 SAMN23214200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730123/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2422027587891 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3476123809814 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9737739562988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817951 SAMN23214789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730124/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8339958190918 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8710861206055 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.557409286499 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817952 SAMN23216435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730126/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.715446472168 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4991893768311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2346477508545 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817953 SAMN23214199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730125/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6711387634277 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7469100952148 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3996753692627 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817954 SAMN23215870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730127/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.369068145752 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2611770629883 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8385200500488 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817955 SAMN23216434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730128/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.837064743042 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1403827667236 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6521415710449 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817956 SAMN23213849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730129/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.1117477416992 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.1582355499268 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.8259906768799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817957 SAMN23214198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730131/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3013591766357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0941600799561 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.719144821167 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817958 SAMN23215112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730130/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6693115234375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.558744430542 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4424419403076 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817959 SAMN23215869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730132/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2720184326172 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3422870635986 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8396053314209 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817960 SAMN23215111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730133/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.390905380249 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2436809539795 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7796783447266 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817961 SAMN23213756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000730135/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2211742401123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1504898071289 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8234939575195 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817962 SAMN23213848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730134/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9177703857422 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4650115966797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8009948730469 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817963 SAMN23215110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730136/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5595188140869 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8128204345703 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4218158721924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817964 SAMN23216433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730137/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6416778564453 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7593154907227 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3436088562012 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817965 SAMN23215576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725065/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.826434135437 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1171989440918 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7343807220459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817966 SAMN23217469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725064/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6804027557373 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3320026397705 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1754970550537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817967 SAMN23214965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000725068/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.237678527832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.92236328125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4787635803223 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817968 SAMN23215575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725069/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7255401611328 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3917407989502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.275899887085 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817969 SAMN23215574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725071/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.3360252380371 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.2166080474854 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.0647859573364 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817970 SAMN23217468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725070/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6581649780273 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9611492156982 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4918098449707 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817971 SAMN23217466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725073/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0875263214111 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8472328186035 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8421592712402 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817972 SAMN23217467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725072/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9635848999023 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.9458141326904 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.6608562469482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817973 SAMN23215573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725076/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7763614654541 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6945247650146 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5305557250977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817974 SAMN23217465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725077/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3249702453613 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2382125854492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2245540618896 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817975 SAMN23214085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725079/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.3863220214844 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.0304975509644 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.2488088607788 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817976 SAMN23217464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725078/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.797477722168 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8302021026611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4327945709229 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817977 SAMN23215572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725080/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1384811401367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7702045440674 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2595806121826 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817978 SAMN23214842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000725081/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.8185911178589 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1872692108154 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.8396949768066 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817979 SAMN23213782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/UT-CDC-STM-000725084/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2642688751221 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1507797241211 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7060890197754 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817980 SAMN23214841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000725085/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6374549865723 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4053688049316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0615406036377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817981 SAMN23216173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725086/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.6579561233521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.9053583145142 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.6726150512695 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817982 SAMN23215571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725087/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 11.3298292160034 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 12.489839553833 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 11.9888210296631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817983 SAMN23216172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725088/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1488304138184 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9174671173096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7747249603271 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817984 SAMN23214425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000725092/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4472694396973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4806880950928 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0507068634033 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817985 SAMN23215570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725091/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3226757049561 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0556983947754 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2423839569092 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817986 SAMN23214084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725089/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7839660644531 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2057361602783 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7551822662354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817987 SAMN23217463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725094/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1638336181641 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0036201477051 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.833553314209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817988 SAMN23214351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725095/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5000419616699 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2896499633789 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9975128173828 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817989 SAMN23215569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725102/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3580207824707 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5890769958496 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0141086578369 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817990 SAMN23214083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725103/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4176330566406 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8052711486816 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5970077514648 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817991 SAMN23214082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725105/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7979431152344 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3821258544922 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6875190734863 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817992 SAMN23215568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725104/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6979074478149 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6343364715576 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4521293640137 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817993 SAMN23216170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725107/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4496364593506 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2032318115234 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9551410675049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817994 SAMN23216171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725106/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0077209472656 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0854377746582 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8105144500732 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817995 SAMN23217462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725108/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8826160430908 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8302459716797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.553337097168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817996 SAMN23217461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725109/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7327156066895 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.1785106658936 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7489643096924 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817997 SAMN23215246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728950/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1519966125488 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7136363983154 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2278919219971 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817998 SAMN23215247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728949/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4852485656738 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7151966094971 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3126182556152 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12817999 SAMN23215245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728951/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8289794921875 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2451343536377 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8791961669922 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818000 SAMN23216263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730838/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5291557312012 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0710620880127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6958484649658 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818001 SAMN23214991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730840/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5919456481934 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3511867523193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3180179595947 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818002 SAMN23217664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730839/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6038970947266 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7507362365723 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.613639831543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818003 SAMN23214577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730841/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4394874572754 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4506778717041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0049133300781 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818004 SAMN23214990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730843/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.473762512207 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5209980010986 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8920021057129 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818005 SAMN23215640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000730844/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.750524520874 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7670078277588 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1571292877197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818006 SAMN23216262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730842/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8251667022705 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.2357120513916 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.9198112487793 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818007 SAMN23216261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730845/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7772655487061 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1212272644043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7412376403809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818008 SAMN23214154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730846/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4515171051025 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7959766387939 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4882125854492 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818009 SAMN23214531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730847/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8408145904541 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7731037139893 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7297477722168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818010 SAMN23214530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730848/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4223136901855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7284240722656 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4794082641602 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818011 SAMN23214989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730849/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4595489501953 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7751560211182 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2243041992188 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818012 SAMN23214777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730850/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1637630462646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9488563537598 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7750835418701 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818013 SAMN23213794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730851/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8627071380615 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2655639648438 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0631275177002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818014 SAMN23214988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730853/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5629348754883 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7327003479004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.214017868042 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818015 SAMN23216259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730855/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3019351959229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3690452575684 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0522861480713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818016 SAMN23216260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730854/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7481727600098 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.011079788208 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0278549194336 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818017 SAMN23214987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730856/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7301692962646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5952167510986 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4678573608398 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818018 SAMN23216258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730858/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8443717956543 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7657604217529 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.399829864502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818019 SAMN23214576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730857/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1612720489502 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2125473022461 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0072269439697 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818020 SAMN23214904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728316/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7681465148926 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.779899597168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7033958435059 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818021 SAMN23214903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728324/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3798961639404 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5266342163086 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1802101135254 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818022 SAMN23214905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728314/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1722431182861 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3224582672119 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3830509185791 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818023 SAMN23214902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728329/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.911584854126 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3153018951416 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8189601898193 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818024 SAMN23214901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728335/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8212375640869 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0190696716309 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.6579513549805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818025 SAMN23214900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728336/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2346496582031 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5822372436523 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4136657714844 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818026 SAMN23214899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728348/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8044013977051 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0637722015381 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8802280426025 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818027 SAMN23214898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728349/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5040836334229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3762187957764 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6041011810303 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818028 SAMN23214896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728351/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8373832702637 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5249042510986 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3385543823242 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818029 SAMN23214895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728355/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8243160247803 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9122371673584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5345478057861 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818030 SAMN23214897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728350/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5615158081055 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0934638977051 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0587615966797 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818031 SAMN23214894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728356/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5806922912598 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5902938842773 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2068424224854 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818032 SAMN23214893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728357/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 26.2544898986816 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.9816398620605 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.5544929504395 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818033 SAMN23214892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728367/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5865898132324 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6296100616455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5412693023682 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818034 SAMN23214891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728369/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9237480163574 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6976909637451 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6541004180908 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818035 SAMN23214890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728372/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.585111618042 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6222610473633 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2523803710938 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818036 SAMN23214888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728377/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7197189331055 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6987285614014 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3976345062256 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818037 SAMN23214887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728378/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6730365753174 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7945194244385 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4535636901855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818038 SAMN23214889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728376/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3066902160645 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0691680908203 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6072940826416 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818039 SAMN23214886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728379/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6524181365967 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.598503112793 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1076583862305 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818040 SAMN23214885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728392/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9207668304443 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1505088806152 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8093280792236 lineage/clade name AY.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818041 SAMN23214884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728403/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.719446182251 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3771286010742 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7986679077148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818042 SAMN23214883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728404/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 26.6742877960205 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 28.5108966827393 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 28.4646492004395 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818043 SAMN23214882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728405/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4740142822266 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4617786407471 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0492553710938 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818044 SAMN23214880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728412/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1402282714844 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2816390991211 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0535850524902 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818045 SAMN23214881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728411/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.630952835083 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0497226715088 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1674556732178 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818046 SAMN23214879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728419/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2083263397217 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0660343170166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8240985870361 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818047 SAMN23214878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728420/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5578289031982 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6711902618408 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8322868347168 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818048 SAMN23214877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728423/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7411518096924 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.757833480835 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6426277160645 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818049 SAMN23214876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728429/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6922760009766 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.59108543396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4124202728271 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818050 SAMN23214875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728433/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2176628112793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1414546966553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8628463745117 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818051 SAMN23214874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728434/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5634384155273 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2550201416016 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1095962524414 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818052 SAMN23215479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726519/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6804523468018 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7505741119385 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5524749755859 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818053 SAMN23214038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726520/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1985054016113 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3427276611328 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7371273040771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818054 SAMN23215478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726521/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4066066741943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2994556427002 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8898658752441 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818055 SAMN23216117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726522/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9466991424561 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4412841796875 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7565593719482 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818056 SAMN23217554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-000726524/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1040344238281 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2240962982178 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7414512634277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818057 SAMN23217335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726523/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4208698272705 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8902778625488 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6916637420654 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818058 SAMN23215477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726525/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0727214813232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3683757781982 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9561653137207 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818059 SAMN23213760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000726527/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9991092681885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0956535339355 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7460193634033 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818060 SAMN23214114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000726526/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6759433746338 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.701623916626 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2728118896484 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818061 SAMN23217334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726528/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2993507385254 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2866439819336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0817527770996 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818062 SAMN23217553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-000726529/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6200122833252 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6796588897705 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0376110076904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818063 SAMN23216116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726530/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5329303741455 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4565162658691 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9326877593994 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818064 SAMN23215476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726531/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4224948883057 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1113700866699 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0188484191895 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818065 SAMN23216115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726532/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.856725692749 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5907535552979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6706237792969 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818066 SAMN23216114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726533/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7547054290771 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6901435852051 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5471210479736 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818067 SAMN23217333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726534/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.795259475708 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7724838256836 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6004409790039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818068 SAMN23215475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726535/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4721736907959 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6629638671875 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4314804077148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818069 SAMN23217332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726537/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4890193939209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6548290252686 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7069187164307 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818070 SAMN23215474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726536/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6031475067139 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6704330444336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.1897964477539 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818071 SAMN23216113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726538/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7859401702881 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8794994354248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6993713378906 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818072 SAMN23214319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726539/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1238050460815 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8244781494141 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4308433532715 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818073 SAMN23215473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726540/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.3863763809204 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.5237245559692 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.8827285766602 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818074 SAMN23216112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726541/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.083179473877 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2122440338135 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8247661590576 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818075 SAMN23217331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726542/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.5441608428955 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.27867603302 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.3611660003662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818076 SAMN23217640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726544/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8011817932129 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8847560882568 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2308197021484 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818077 SAMN23215472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726545/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.2213201522827 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.5520906448364 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.1236877441406 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818078 SAMN23217330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726543/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7594318389893 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8154830932617 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4393978118896 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818079 SAMN23215471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726546/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1050872802734 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4362144470215 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1022987365723 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818080 SAMN23215470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726547/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8352680206299 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1478443145752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7842330932617 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818081 SAMN23214444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000726548/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4291763305664 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4486885070801 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4759654998779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818082 SAMN23216111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726549/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5219421386719 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7228221893311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2335052490234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818083 SAMN23214037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726550/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.467887878418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8179779052734 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4914569854736 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818084 SAMN23214872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728439/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 26.5815887451172 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.6843280792236 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.1497020721436 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818085 SAMN23214871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728443/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1892547607422 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0565872192383 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8245544433594 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818086 SAMN23214873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728438/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1864719390869 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1314544677734 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8460235595703 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818087 SAMN23214870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728444/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8117580413818 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7486324310303 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4317073822021 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818088 SAMN23214869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728464/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0924777984619 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0337581634521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1977272033691 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818089 SAMN23214868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728465/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6955223083496 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6139850616455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3980522155762 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818090 SAMN23214867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728472/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9731502532959 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.7833709716797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.3034114837646 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818091 SAMN23214866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728481/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8274173736572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3959293365479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5607299804688 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818092 SAMN23213955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728530/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3475723266602 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2488822937012 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3307914733887 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818093 SAMN23216749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728531/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1556377410889 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5819873809814 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7713394165039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818094 SAMN23214865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728525/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 26.5015869140625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.9173908233643 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 27.6329193115234 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818095 SAMN23214864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728541/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3441486358643 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9618816375732 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8104267120361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818096 SAMN23214863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728561/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1001930236816 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0376453399658 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.819974899292 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818097 SAMN23213954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728564/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4310207366943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5821952819824 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1286468505859 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818098 SAMN23214862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000728562/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.743335723877 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3922805786133 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3624019622803 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818099 SAMN23216748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728569/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6662521362305 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5244197845459 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1342792510986 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818100 SAMN23215304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728570/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7670497894287 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8262901306152 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6910037994385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818101 SAMN23216006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728571/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.093433380127 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9087104797363 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6370315551758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818102 SAMN23216747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728572/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3530979156494 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4688911437988 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3545188903809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818103 SAMN23215303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728573/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9671382904053 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8093433380127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5234622955322 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818104 SAMN23215302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728574/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8937339782715 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0386028289795 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8373107910156 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818105 SAMN23216745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728576/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0407447814941 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0772972106934 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6413402557373 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818106 SAMN23214685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728577/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4021091461182 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7959899902344 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5388412475586 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818107 SAMN23215301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728578/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5003852844238 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7972354888916 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.183521270752 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818108 SAMN23216746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728575/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7220001220703 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1284694671631 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7337417602539 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818109 SAMN23215300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728579/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3305053710938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2130584716797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9330883026123 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818110 SAMN23217558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CT-CDC-STM-000728580/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3842868804932 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3728466033936 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9821910858154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818111 SAMN23215299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728581/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.476095199585 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5141410827637 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.223388671875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818112 SAMN23214684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728582/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2319965362549 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1605358123779 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8346900939941 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818113 SAMN23215663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000728584/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7172527313232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.794620513916 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6551036834717 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818114 SAMN23214683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728583/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.475399017334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5804920196533 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1083850860596 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818115 SAMN23215298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728585/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8373947143555 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8327770233154 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6072578430176 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818116 SAMN23215459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726628/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4250831604004 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4579296112061 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1034259796143 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818117 SAMN23215460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726627/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.6701745986938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.6915483474731 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.5478668212891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818118 SAMN23215458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726629/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1425151824951 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1801567077637 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8525447845459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818119 SAMN23217312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726630/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8408002853394 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7436389923096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5797252655029 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818120 SAMN23217311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726631/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1392498016357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2815189361572 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8801441192627 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818121 SAMN23217634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726633/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9820785522461 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8852005004883 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.827449798584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818122 SAMN23216105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726632/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7954254150391 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7824897766113 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3056163787842 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818123 SAMN23217310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726634/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7630653381348 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8136157989502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5172061920166 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818124 SAMN23216104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726635/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7954254150391 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7824897766113 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3056163787842 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818125 SAMN23214031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726636/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2551593780518 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9443798065186 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5259761810303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818126 SAMN23214030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726637/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7317237854004 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7600021362305 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3691864013672 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818127 SAMN23217309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726638/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2262401580811 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2153358459473 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8379878997803 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818128 SAMN23214029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726640/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4294052124023 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4317016601562 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9383869171143 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818129 SAMN23217308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726639/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3713531494141 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8823680877686 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9116697311401 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818130 SAMN23217307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726641/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9598083496094 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2501373291016 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9920101165771 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818131 SAMN23217306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726642/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2250366210938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9056758880615 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8362903594971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818132 SAMN23217305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726643/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1392498016357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2815189361572 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8801441192627 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818133 SAMN23214028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726644/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2551593780518 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9443798065186 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5259761810303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818134 SAMN23217304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726645/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9417095184326 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8896465301514 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.742977142334 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818135 SAMN23217740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726646/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1148433685303 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9256896972656 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8026142120361 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818136 SAMN23217301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726650/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0019550323486 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7957420349121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8053607940674 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818137 SAMN23217303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726648/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.516960144043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7826766967773 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.683723449707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818138 SAMN23217302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726649/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4602527618408 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4336948394775 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2436141967773 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818139 SAMN23217298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726653/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7000961303711 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4173641204834 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8120460510254 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818140 SAMN23216103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726654/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.747142791748 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5058269500732 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4093856811523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818141 SAMN23217300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726651/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8408002853394 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7436389923096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5797252655029 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818142 SAMN23217299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726652/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7017784118652 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0293598175049 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0672473907471 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818143 SAMN23217297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726655/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 26.3315773010254 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5948219299316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4388103485107 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818144 SAMN23214027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726656/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7317237854004 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7600021362305 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3691864013672 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818145 SAMN23217296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726657/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5193309783936 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5848407745361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4974498748779 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818146 SAMN23217295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726658/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5210857391357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4397392272949 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0462608337402 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818147 SAMN23216102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726659/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7395305633545 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7473278045654 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.608528137207 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818148 SAMN23214127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000729817/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1511459350586 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.850887298584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7453346252441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818149 SAMN23216479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729818/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6326637268066 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9849739074707 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8094577789307 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818150 SAMN23213876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729819/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0684661865234 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9462299346924 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9138069152832 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818151 SAMN23216477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729822/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8346729278564 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9200687408447 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7551879882812 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818152 SAMN23213875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729823/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2904415130615 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9631690979004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6503887176514 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818153 SAMN23216478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729820/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 25.5833263397217 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8456726074219 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7528171539307 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818154 SAMN23215888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729821/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4196739196777 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.764030456543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4011840820312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818155 SAMN23216476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729824/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5477313995361 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8409233093262 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6575584411621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818156 SAMN23214630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729825/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8252544403076 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6950435638428 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2499771118164 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818157 SAMN23216475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729826/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6215400695801 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.516429901123 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7132034301758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818158 SAMN23216474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729827/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9272022247314 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7152156829834 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2123260498047 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818159 SAMN23215887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729828/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0859489440918 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0027503967285 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8023567199707 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818160 SAMN23214143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-000729829/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7287693023682 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6502513885498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7369804382324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818161 SAMN23213757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000729830/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8199939727783 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1420402526855 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8020191192627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818162 SAMN23214544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000729831/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7590637207031 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7839374542236 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5838222503662 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818163 SAMN23214543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000729832/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2694110870361 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1591873168945 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9168605804443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818164 SAMN23215886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729833/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7812995910645 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.4997825622559 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.2579708099365 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818165 SAMN23214629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729834/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5342035293579 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3497047424316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2127571105957 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818166 SAMN23215885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729835/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.0320262908936 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6614761352539 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4335231781006 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818167 SAMN23216473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729836/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.0772438049316 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.8881769180298 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.8877048492432 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818168 SAMN23214628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729838/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7269477844238 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5834159851074 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2032814025879 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818169 SAMN23215146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729837/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5734577178955 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0180473327637 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7580432891846 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818170 SAMN23215884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729839/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5085983276367 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6658840179443 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5226936340332 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818171 SAMN23215883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729842/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2199363708496 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9930362701416 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7112712860107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818172 SAMN23216472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729840/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6257724761963 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8068180084229 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5127010345459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818173 SAMN23216471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729843/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8770370483398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.759916305542 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3520641326904 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818174 SAMN23214107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000729841/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0795993804932 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6528739929199 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3927402496338 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818175 SAMN23216470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729844/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3069190979004 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4935359954834 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8320350646973 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818176 SAMN23216469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729845/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2925987243652 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3438949584961 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8582210540771 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818177 SAMN23215882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729846/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 56 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2342147827148 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9216976165771 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818178 SAMN23213874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729847/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2468872070312 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0343399047852 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.968505859375 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818179 SAMN23216468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729848/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.8837919235229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.7594013214111 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.7741003036499 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818180 SAMN23216726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728659/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9598941802979 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1378536224365 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8227500915527 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818181 SAMN23216725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728660/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9616661071777 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7963581085205 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.377986907959 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818182 SAMN23216724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728661/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9304828643799 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2628192901611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8240509033203 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818183 SAMN23216723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728662/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9809093475342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3746795654297 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.845121383667 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818184 SAMN23216722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728663/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.194787979126 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2603378295898 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2903938293457 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818185 SAMN23216721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728664/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7987728118896 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.976001739502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7082252502441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818186 SAMN23216720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728666/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5608024597168 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5944194793701 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2824058532715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818187 SAMN23213950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728665/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5673885345459 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.616943359375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4711990356445 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818188 SAMN23213949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728667/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1639080047607 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3299465179443 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9783515930176 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818189 SAMN23213948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728668/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.031494140625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1490230560303 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8360023498535 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818190 SAMN23216719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728669/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0361862182617 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.924409866333 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7277603149414 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818191 SAMN23216718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728670/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2175998687744 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7989616394043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5107707977295 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818192 SAMN23215994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728671/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8200225830078 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1464881896973 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6980609893799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818193 SAMN23213947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728673/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4423866271973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3802814483643 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1822261810303 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818194 SAMN23215993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728674/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4255256652832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1958045959473 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9371967315674 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818195 SAMN23215992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728675/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9947147369385 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8741645812988 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6733570098877 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818196 SAMN23214679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728676/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1996593475342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2005195617676 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8070487976074 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818197 SAMN23215991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728677/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8397560119629 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7151699066162 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2689838409424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818198 SAMN23214678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728678/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7546195983887 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7742938995361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6784496307373 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818199 SAMN23217613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728679/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1206169128418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.288610458374 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8279457092285 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818200 SAMN23216717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728680/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2557334899902 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0845241546631 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6398735046387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818201 SAMN23213946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728681/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7507171630859 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2720775604248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9658222198486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818202 SAMN23215990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728682/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.064567565918 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.6215229034424 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3114433288574 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818203 SAMN23216716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728683/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5793361663818 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2401065826416 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1266708374023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818204 SAMN23215989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728684/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3353366851807 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1319198608398 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5072536468506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818205 SAMN23216715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728685/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8027381896973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.80784034729 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7005214691162 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818206 SAMN23216714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728686/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5263118743896 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3719482421875 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1286029815674 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818207 SAMN23215988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728687/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0472793579102 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7747440338135 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7777709960938 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818208 SAMN23213945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728688/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6957473754883 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6833305358887 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5673236846924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818209 SAMN23215987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728689/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8313808441162 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0013446807861 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2450695037842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818210 SAMN23216713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728690/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6614513397217 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3524627685547 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0681648254395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818211 SAMN23214102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724138/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.5113201141357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.322606086731 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.0064687728882 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818212 SAMN23216712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728691/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.9481115341187 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.0655832290649 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.6210355758667 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818213 SAMN23214377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724139/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8479461669922 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.4441394805908 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.0494842529297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818214 SAMN23217536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724140/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0480289459229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5358905792236 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3381404876709 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818215 SAMN23214767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724141/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.863245010376 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.7877597808838 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.7794570922852 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818216 SAMN23214428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000724142/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2123832702637 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2246017456055 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3324146270752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818217 SAMN23216208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724144/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7544536590576 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7831153869629 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8257503509521 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818218 SAMN23216209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724143/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5778656005859 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4125328063965 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0419216156006 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818219 SAMN23214846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000724145/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2797698974609 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2040214538574 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9935684204102 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818220 SAMN23215629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724146/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.076530456543 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8540115356445 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8088645935059 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818221 SAMN23215628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724147/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0585422515869 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6118030548096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1674900054932 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818222 SAMN23217535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724149/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5825309753418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.762716293335 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6097278594971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818223 SAMN23216207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724148/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2054424285889 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.196849822998 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7705726623535 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818224 SAMN23214766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724150/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0647010803223 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6634273529053 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2675762176514 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818225 SAMN23214101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724151/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4773502349854 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2087211608887 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9920692443848 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818226 SAMN23216206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724152/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7930946350098 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0414962768555 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7802448272705 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818227 SAMN23217534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724153/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6880664825439 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6600894927979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.960563659668 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818228 SAMN23215627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724155/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2572803497314 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3786067962646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0887565612793 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818229 SAMN23215687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000724154/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.522518157959 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.576904296875 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4677066802979 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818230 SAMN23217533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724156/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3662948608398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0820083618164 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7428855895996 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818231 SAMN23216205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724157/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9719581604004 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2791042327881 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9126720428467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818232 SAMN23214776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000724159/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.8159847259521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7781162261963 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.687237739563 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818233 SAMN23214100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724158/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2496929168701 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9712886810303 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8165645599365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818234 SAMN23217532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724160/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7336006164551 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5498237609863 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4153690338135 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818235 SAMN23216204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724161/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8261985778809 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5967464447021 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7795066833496 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818236 SAMN23216203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724162/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6845989227295 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.702709197998 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3012237548828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818237 SAMN23217531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724163/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4057846069336 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3433303833008 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7823581695557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818238 SAMN23214376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724164/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1707229614258 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.142333984375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7758541107178 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818239 SAMN23214765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724165/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9939451217651 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.236457824707 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1041221618652 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818240 SAMN23217530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724166/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5686187744141 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4344234466553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1942844390869 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818242 SAMN23216202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724168/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3697452545166 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2793979644775 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.955249786377 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818243 SAMN23217528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724169/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0859527587891 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9135456085205 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7962627410889 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818244 SAMN23215266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728763/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5744972229004 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4450397491455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8474750518799 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818245 SAMN23215981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728764/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4590911865234 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3902988433838 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0220508575439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818246 SAMN23216698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728765/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7649908065796 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.6146516799927 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3065853118896 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818247 SAMN23214670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728767/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8316993713379 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.7925052642822 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.4049234390259 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818241 SAMN23217529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724167/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.319580078125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7854137420654 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5731048583984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818248 SAMN23213939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728768/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7860889434814 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8779888153076 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7543354034424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818249 SAMN23214253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728769/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7844295501709 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7694854736328 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0300064086914 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818250 SAMN23215980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728772/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.063289642334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0430183410645 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8282260894775 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818251 SAMN23216697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728771/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4403896331787 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2631015777588 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7209701538086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818252 SAMN23215265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728770/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0814037322998 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.478666305542 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3876495361328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818253 SAMN23215264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728773/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6203498840332 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6794166564941 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7152500152588 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818254 SAMN23215263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728774/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7546710968018 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.805248260498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5579032897949 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818255 SAMN23216696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728775/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7541217803955 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7828330993652 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4873447418213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818256 SAMN23215979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728776/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2886848449707 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9843330383301 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7785625457764 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818257 SAMN23217776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000728777/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7894859313965 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4334335327148 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.394926071167 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818258 SAMN23215262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728778/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7290115356445 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.114616394043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7760639190674 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818259 SAMN23214252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728779/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.446102142334 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6954078674316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4167137145996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818260 SAMN23215978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728780/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5115242004395 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.990255355835 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9593963623047 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818261 SAMN23215261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728781/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4531898498535 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7751083374023 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3617382049561 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818262 SAMN23214251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728783/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2616958618164 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.42160987854 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8422985076904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818263 SAMN23213938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728782/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1161918640137 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9762020111084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6432609558105 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818264 SAMN23214809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728784/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8578033447266 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8507347106934 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9208335876465 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818265 SAMN23215977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728785/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2359657287598 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.256519317627 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8003234863281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818266 SAMN23213777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000728786/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1534023284912 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6744041442871 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1853103637695 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818267 SAMN23216695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728787/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1720695495605 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0351219177246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8145198822021 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818268 SAMN23215260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728788/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6543998718262 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3999500274658 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0905666351318 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818269 SAMN23214669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728789/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7519035339355 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6871395111084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2670383453369 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818270 SAMN23215976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728790/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8917636871338 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7522525787354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5540237426758 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818271 SAMN23213937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728791/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.353346824646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1980419158936 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7617931365967 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818272 SAMN23213936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728792/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8321895599365 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7195777893066 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4915866851807 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818273 SAMN23213758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000728793/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3662147521973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2511043548584 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.88498878479 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818274 SAMN23217775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000728794/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6492404937744 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2367725372314 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8816719055176 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818275 SAMN23215975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728795/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3772706985474 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4204578399658 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9932098388672 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818276 SAMN23214369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724374/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2773094177246 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0658359527588 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6977863311768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818277 SAMN23216193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724375/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8339195251465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.152889251709 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7459983825684 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818278 SAMN23215611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724376/2021 collected_by 'Helix' collection_date 2021-08-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9927349090576 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2951889038086 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0588722229004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818279 SAMN23215610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724377/2021 collected_by 'Helix' collection_date 2021-08-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2561187744141 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7355060577393 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5544204711914 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818280 SAMN23216192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724378/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7004680633545 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2657032012939 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3082141876221 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818281 SAMN23217567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000724380/2021 collected_by 'Helix' collection_date 2021-08-22 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.714729309082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8315029144287 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.687328338623 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818282 SAMN23215609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724379/2021 collected_by 'Helix' collection_date 2021-08-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.749321937561 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4277935028076 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3403224945068 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818283 SAMN23215608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724381/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2030754089355 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2150650024414 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8969631195068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818284 SAMN23216191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724382/2021 collected_by 'Helix' collection_date 2021-08-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9406280517578 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.612003326416 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8138027191162 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818285 SAMN23217499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724383/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9368877410889 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7362041473389 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7413635253906 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818286 SAMN23216190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724384/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5869464874268 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5950965881348 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.296745300293 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818287 SAMN23214093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724385/2021 collected_by 'Helix' collection_date 2021-08-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8852214813232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9123458862305 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.763370513916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818288 SAMN23214762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000724386/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3792591094971 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7029705047607 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4811916351318 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818289 SAMN23214946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000724387/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.773078918457 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.184928894043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8443832397461 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818290 SAMN23216189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724388/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1279258728027 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0062503814697 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.728271484375 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818291 SAMN23214774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000724391/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7294883728027 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5406837463379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.829345703125 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818292 SAMN23214945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000724392/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 12.2445240020752 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 12.8366775512695 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 12.612340927124 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818293 SAMN23214368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724393/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6821384429932 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6296081542969 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1972732543945 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818294 SAMN23214367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000724394/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7022800445557 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.792407989502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5323314666748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818295 SAMN23214571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000724402/2021 collected_by 'Helix' collection_date 2021-08-22 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3479843139648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2567977905273 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8520545959473 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818296 SAMN23215607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000724395/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4798736572266 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.744421005249 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4708786010742 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818297 SAMN23217498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724404/2021 collected_by 'Helix' collection_date 2021-08-21 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.351619720459 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8252506256104 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1325950622559 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818298 SAMN23217756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000724403/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8755264282227 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8106727600098 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6861972808838 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818299 SAMN23217755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000724405/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8403358459473 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6369171142578 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6782665252686 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818300 SAMN23217497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724406/2021 collected_by 'Helix' collection_date 2021-08-23 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5094757080078 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4642715454102 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9762554168701 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818301 SAMN23214092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724407/2021 collected_by 'Helix' collection_date 2021-08-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9991073608398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7769718170166 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7969913482666 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818302 SAMN23217782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000724408/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9313640594482 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0877895355225 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7931499481201 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818303 SAMN23214944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000724409/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0772075653076 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.254997253418 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0178813934326 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818304 SAMN23214845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000724410/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3859062194824 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3739242553711 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2454452514648 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818305 SAMN23217496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000724411/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4141941070557 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5008792877197 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5656242370605 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818306 SAMN23213928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728917/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7766952514648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6754817962646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3784770965576 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818307 SAMN23216188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000724412/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5557479858398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7336025238037 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3614482879639 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818308 SAMN23214091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000724413/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7286386489868 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.7698278427124 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.3456220626831 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818309 SAMN23217773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000728918/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1440410614014 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6667537689209 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.54953956604 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818310 SAMN23214456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000728919/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0497283935547 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5137023925781 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.741569519043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818311 SAMN23214959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000728920/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1718406677246 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3307361602783 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.93479347229 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818312 SAMN23217697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728921/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0822706222534 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2809619903564 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.8010807037354 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818313 SAMN23214131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000728922/2021 collected_by 'Helix' collection_date 2021-09-06 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8523082733154 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3131370544434 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0321712493896 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818314 SAMN23214245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728924/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6018009185791 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5511474609375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3252487182617 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818315 SAMN23214246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728923/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8904991149902 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8910045623779 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.806791305542 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818316 SAMN23214969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KS-CDC-STM-000728925/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5506572723389 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6067886352539 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0655460357666 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818317 SAMN23213776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000728926/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1727104187012 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0430011749268 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8072605133057 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818318 SAMN23215252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728927/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0060634613037 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5017547607422 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1327018737793 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818319 SAMN23216680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728929/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6203918457031 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6465320587158 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4646797180176 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818320 SAMN23214525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MO-CDC-STM-000728928/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9950580596924 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7854442596436 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7131633758545 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818321 SAMN23215966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728930/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8003959655762 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7950782775879 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8183193206787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818322 SAMN23216679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728931/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4131164550781 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7526760101318 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5207672119141 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818323 SAMN23216678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728932/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.839822769165 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6715774536133 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5978946685791 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818324 SAMN23214968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KS-CDC-STM-000728933/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3476409912109 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6820163726807 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3170146942139 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818325 SAMN23214244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728934/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9903659820557 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8073406219482 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.639799118042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818326 SAMN23214109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000728935/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8351974487305 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5975570678711 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0878868103027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818327 SAMN23214958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000728936/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8054370880127 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7627277374268 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7833576202393 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818328 SAMN23213927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728937/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7194328308105 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.611946105957 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.184232711792 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818329 SAMN23215251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728938/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7789306640625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6273670196533 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7289009094238 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818330 SAMN23213748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WV-CDC-STM-000728939/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2825231552124 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3590450286865 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2373313903809 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818331 SAMN23215965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728940/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.4129209518433 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.701226234436 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.0117025375366 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818332 SAMN23215964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728942/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1538276672363 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1317157745361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7636108398438 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818333 SAMN23217551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-000728941/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7589988708496 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7922554016113 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3222675323486 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818334 SAMN23215250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728943/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6894645690918 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3058643341064 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2305374145508 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818335 SAMN23215249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728944/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6992626190186 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3681049346924 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0342960357666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818336 SAMN23213844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730227/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8053207397461 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8173503875732 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5343379974365 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818337 SAMN23216412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730228/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2109642028809 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0351829528809 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8385562896729 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818338 SAMN23214190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730229/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8109951019287 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7873878479004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6424350738525 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818339 SAMN23215094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730230/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6909942626953 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.1526203155518 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7067947387695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818340 SAMN23215093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730231/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4035224914551 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9562854766846 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8627986907959 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818341 SAMN23216411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730233/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2247638702393 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3352088928223 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8109455108643 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818342 SAMN23214503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000730232/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0736885070801 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8213329315186 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7563819885254 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818343 SAMN23215092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730234/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9587459564209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0309772491455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8244514465332 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818344 SAMN23215091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730235/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4384155273438 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.379467010498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9827632904053 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818345 SAMN23214406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000730236/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.013560295105 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0757942199707 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0424728393555 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818346 SAMN23214473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000730237/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7310647964478 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8200969696045 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6986637115479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818347 SAMN23214453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000730238/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9594669342041 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.3095474243164 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.6306190490723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818348 SAMN23216410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730239/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0805778503418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3414649963379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8328514099121 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818349 SAMN23213923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729020/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6444339752197 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.814962387085 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3503932952881 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818350 SAMN23216664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729021/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6092166900635 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5456790924072 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3340167999268 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818351 SAMN23213922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729022/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8166790008545 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9572582244873 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7445487976074 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818352 SAMN23217602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729023/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2371482849121 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3709201812744 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2346897125244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818353 SAMN23215956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729024/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.641092300415 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5893154144287 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4660778045654 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818354 SAMN23217601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729025/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4562892913818 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3188056945801 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0024166107178 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818355 SAMN23216663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729026/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5592632293701 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3134918212891 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1153526306152 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818356 SAMN23214659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729027/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7583770751953 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8323097229004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6884613037109 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818357 SAMN23215955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729028/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8762149810791 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8046264648438 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6375026702881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818358 SAMN23213921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729029/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9655933380127 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8383865356445 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5116596221924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818359 SAMN23214238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729031/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5909547805786 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4928817749023 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2832183837891 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818360 SAMN23216661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729033/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4218826293945 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2974319458008 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.994348526001 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818361 SAMN23216662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729030/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7538604736328 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6730995178223 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5533752441406 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818362 SAMN23214658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729032/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5443801879883 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7067584991455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.293399810791 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818363 SAMN23216660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729034/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6814479827881 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2213478088379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8482189178467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818364 SAMN23215954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729035/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4142875671387 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5541439056396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4094982147217 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818365 SAMN23215953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729038/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.304500579834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9643325805664 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8073902130127 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818366 SAMN23216658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729039/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5580577850342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.796947479248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6359977722168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818367 SAMN23214416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000729037/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3222122192383 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1953372955322 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8806018829346 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818368 SAMN23216659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729036/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8101768493652 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7305717468262 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5839233398438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818369 SAMN23213920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729040/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0072994232178 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9643402099609 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5543327331543 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818370 SAMN23213919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729041/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7580966949463 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3451919555664 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.737735748291 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818371 SAMN23213918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729042/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8840045928955 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7835273742676 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6573657989502 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818372 SAMN23216657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729043/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2363338470459 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1910057067871 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.765344619751 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818373 SAMN23216655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729045/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2234554290771 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.040657043457 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8236045837402 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818374 SAMN23216656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729044/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6698017120361 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5382671356201 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2122268676758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818375 SAMN23216654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729046/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1546955108643 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1339740753174 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.928804397583 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818376 SAMN23216653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729047/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5853118896484 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.375581741333 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1016864776611 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818377 SAMN23216651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729049/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7225284576416 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8238277435303 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3059425354004 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818378 SAMN23216652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729048/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6794605255127 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9080505371094 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7924995422363 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818379 SAMN23216650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729050/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6157379150391 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4869060516357 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9517841339111 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818380 SAMN23216649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729051/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4678592681885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2801342010498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7765331268311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818381 SAMN23214825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000727048/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4358158111572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.186243057251 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9358921051025 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818382 SAMN23214707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727049/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7425384521484 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.2132320404053 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8995399475098 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818383 SAMN23215399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727050/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5343532562256 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7698307037354 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7346286773682 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818384 SAMN23215398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727052/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2812347412109 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5106391906738 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2430610656738 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818385 SAMN23214006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727053/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1856594085693 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.758430480957 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5269794464111 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818386 SAMN23216075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727051/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7470054626465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8200187683105 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.621696472168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818387 SAMN23213749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WV-CDC-STM-000727054/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3102436065674 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0912685394287 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9114017486572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818388 SAMN23216074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727055/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.049108505249 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9335403442383 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8113555908203 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818389 SAMN23217221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727056/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5660266876221 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7367687225342 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.099702835083 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818390 SAMN23214294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727057/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5925559997559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6400108337402 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3107948303223 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818391 SAMN23215397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727058/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8432378768921 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8063068389893 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4860363006592 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818392 SAMN23214136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000727059/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5963459014893 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4878253936768 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3782424926758 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818393 SAMN23214005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727060/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7850341796875 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7616539001465 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6678676605225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818394 SAMN23214706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727061/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1034812927246 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0407581329346 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6498908996582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818395 SAMN23215396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727062/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3807344436646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3348865509033 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5392227172852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818396 SAMN23214961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000727063/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.04319190979 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.180908203125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8564910888672 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818397 SAMN23214293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727065/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2477378845215 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2129993438721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8394374847412 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818398 SAMN23217220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727064/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7062110900879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7291297912598 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.55251121521 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818399 SAMN23217219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727066/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6170139312744 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8240051269531 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6596813201904 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818400 SAMN23215395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727067/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1016464233398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7893886566162 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7060012817383 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818401 SAMN23217218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727068/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7601718902588 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6714668273926 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5324459075928 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818402 SAMN23216073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727070/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7040538787842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0591049194336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4975814819336 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818403 SAMN23214004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727069/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8950147628784 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.0037088394165 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.8260440826416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818404 SAMN23213770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000727071/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7467250823975 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7261734008789 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7486438751221 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818405 SAMN23215394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727072/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4077396392822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0895900726318 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7915592193604 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818406 SAMN23217217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727073/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8358249664307 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6774921417236 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3928146362305 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818407 SAMN23214292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727074/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8827838897705 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8918876647949 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6239128112793 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818408 SAMN23215670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000727075/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3268222808838 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3348731994629 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.2127933502197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818409 SAMN23216072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727077/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5612716674805 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1935634613037 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0142154693604 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818410 SAMN23214003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727076/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1345367431641 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5613632202148 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2966861724854 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818411 SAMN23217216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727078/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6255836486816 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6821975708008 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.265193939209 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818412 SAMN23214786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730343/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9223899841309 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1125965118408 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7801418304443 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818413 SAMN23216382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730342/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.761754989624 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5249900817871 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3629093170166 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818414 SAMN23216071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727079/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8431301116943 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8948230743408 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8013954162598 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818415 SAMN23215847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730344/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2221527099609 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6916370391846 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1458187103271 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818416 SAMN23216381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730345/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.538444519043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9479312896729 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6098575592041 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818417 SAMN23213765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000730346/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.765043258667 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.597225189209 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3686714172363 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818418 SAMN23215066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730347/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.673397064209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6406326293945 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3952217102051 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818419 SAMN23215846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730348/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5578804016113 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.9412288665771 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5435199737549 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818420 SAMN23213834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730350/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3864688873291 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5216178894043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2529010772705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818421 SAMN23215845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730349/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7533140182495 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.6100845336914 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.4475736618042 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818422 SAMN23214125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000730352/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0954704284668 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1230697631836 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0148983001709 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818423 SAMN23215844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730351/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7668170928955 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.5235347747803 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.2160158157349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818424 SAMN23216380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730353/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9181690216064 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5450744628906 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2653465270996 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818425 SAMN23213833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730354/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0445117950439 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1888542175293 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7385292053223 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818426 SAMN23213832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730355/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9551086425781 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7667407989502 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6517734527588 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818427 SAMN23216379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730356/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7788982391357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8475475311279 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7531852722168 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818428 SAMN23213831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730357/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7125797271729 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8407306671143 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3836364746094 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818429 SAMN23217767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000730358/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7730760574341 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9729442596436 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1549549102783 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818430 SAMN23216378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730359/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3589916229248 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6236743927002 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0454807281494 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818431 SAMN23214452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000730360/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4730968475342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7030048370361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4372482299805 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818432 SAMN23217760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AR-CDC-STM-000730361/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7664813995361 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7947750091553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7175855636597 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818433 SAMN23217581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730362/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8470344543457 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0059547424316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7598934173584 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818434 SAMN23213830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730363/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9516544342041 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.749849319458 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5366630554199 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818435 SAMN23215065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730364/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.11403465271 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8285007476807 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0019721984863 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818436 SAMN23216377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730365/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8331260681152 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6411285400391 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3219985961914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818437 SAMN23215064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730366/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8050594329834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.778356552124 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6745414733887 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818438 SAMN23216376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730367/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7185077667236 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7719650268555 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6714935302734 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818439 SAMN23216375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730368/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6151351928711 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2158164978027 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0644702911377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818440 SAMN23216374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730369/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6076240539551 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2569160461426 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0269298553467 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818441 SAMN23216373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730370/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9642124176025 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2824230194092 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8418197631836 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818442 SAMN23214184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730371/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8031387329102 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7038745880127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3761539459229 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818443 SAMN23216372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730372/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2776107788086 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5763473510742 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.262674331665 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818444 SAMN23213829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730373/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8456687927246 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6504745483398 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5818004608154 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818445 SAMN23217195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727554/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5502223968506 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6219272613525 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4529895782471 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818446 SAMN23214935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000727555/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4221477508545 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1073570251465 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9753618240356 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818447 SAMN23217194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727556/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9817085266113 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3024387359619 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1706809997559 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818448 SAMN23215387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727557/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.196418762207 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7468299865723 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6304244995117 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818449 SAMN23214287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727558/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3891124725342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2137241363525 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9110507965088 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818450 SAMN23214823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000727560/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8161354064941 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6871166229248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6996116638184 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818451 SAMN23217193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727561/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.217812538147 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.3592615127563 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.0995264053345 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818452 SAMN23216055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727562/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.990797996521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.0977401733398 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.964732170105 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818453 SAMN23213996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727559/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.2682790756226 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.5097064971924 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.9969005584717 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818454 SAMN23215669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000727564/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1351642608643 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3091449737549 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4781684875488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818455 SAMN23214934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000727568/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2302494049072 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1951484680176 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9591197967529 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818456 SAMN23215386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727567/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1190891265869 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3006534576416 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8968715667725 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818457 SAMN23214701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727569/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2563056945801 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0458927154541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7860336303711 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818458 SAMN23215385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727570/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1333160400391 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0680770874023 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8205661773682 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818459 SAMN23215668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000727571/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.312068939209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.515308380127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0654964447021 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818460 SAMN23214439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000727575/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9289112091064 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4295406341553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9223136901855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818461 SAMN23215384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727573/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9205493927002 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4985866546631 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.931489944458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818462 SAMN23214487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000727574/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4600563049316 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9449596405029 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7472610473633 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818463 SAMN23216054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727572/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.0201854705811 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8657779693604 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7715759277344 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818464 SAMN23213995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727577/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9627265930176 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4616355895996 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0226669311523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818465 SAMN23217191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727579/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.464542388916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.294605255127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2839603424072 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818466 SAMN23217192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727576/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5160942077637 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6669578552246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5703468322754 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818467 SAMN23215383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727578/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3677272796631 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2150630950928 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9834499359131 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818468 SAMN23217189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727582/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3977279663086 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6073970794678 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4337692260742 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818469 SAMN23217190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727580/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4190731048584 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5294570922852 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3127346038818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818470 SAMN23214486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000727581/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3575534820557 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0828132629395 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8432025909424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818471 SAMN23215382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727583/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7716751098633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6062488555908 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.357837677002 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818472 SAMN23214286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727584/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4833889007568 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0668678283691 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7744464874268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818473 SAMN23216053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727585/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8109111785889 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2814273834229 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0844440460205 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818474 SAMN23213994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727588/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3231582641602 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0124549865723 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7637233734131 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818475 SAMN23217188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727586/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3390235900879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9565296173096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.961820602417 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818476 SAMN23216035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727703/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5217990875244 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9843292236328 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7225761413574 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818477 SAMN23213993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727589/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1810398101807 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.306282043457 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3567447662354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818478 SAMN23215360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727702/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1901321411133 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1775226593018 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0106220245361 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818479 SAMN23216034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727704/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5718326568604 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6368064880371 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3805465698242 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818480 SAMN23214145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-000727705/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8621082305908 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5562381744385 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5514392852783 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818481 SAMN23217168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727706/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.1474351882935 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.0629091262817 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.1448183059692 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818482 SAMN23217167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727707/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7500114440918 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9286441802979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8331184387207 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818483 SAMN23214144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-000727708/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.4570083618164 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5211296081543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3361473083496 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818484 SAMN23214112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000727709/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3648414611816 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7548809051514 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9231090545654 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818485 SAMN23217564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000727710/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.448974609375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4873237609863 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1872406005859 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818486 SAMN23217166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727713/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4815120697021 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8869113922119 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7045860290527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818487 SAMN23216033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727711/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6576900482178 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.982931137085 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3402996063232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818488 SAMN23214275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727715/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3007755279541 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7567291259766 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4529457092285 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818489 SAMN23217165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727716/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.404182434082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.2127227783203 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8566112518311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818490 SAMN23217721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727717/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.110689163208 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.6039323806763 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.1583671569824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818491 SAMN23217722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727714/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7009382247925 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0727519989014 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7427520751953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818492 SAMN23213987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727718/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.3078193664551 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0025939941406 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0807819366455 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818493 SAMN23216032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727719/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7560081481934 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6201591491699 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.094181060791 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818494 SAMN23215359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727720/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3303089141846 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3742713928223 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0134906768799 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818495 SAMN23215358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727721/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7945852279663 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6999111175537 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.4599609375 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818496 SAMN23215357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727722/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3880338668823 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6508121490479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0284214019775 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818497 SAMN23217163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727724/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7476787567139 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2242584228516 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7985172271729 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818498 SAMN23217164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727723/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9016036987305 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8553771972656 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8207550048828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818499 SAMN23213986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727725/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8241901397705 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5785617828369 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6352062225342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818500 SAMN23214274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727726/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0528717041016 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8954753875732 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7994251251221 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818501 SAMN23217162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727727/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2472381591797 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1057949066162 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8423805236816 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818502 SAMN23215356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727729/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4319553375244 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5074348449707 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1943340301514 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818503 SAMN23216031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727728/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4678173065186 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6286525726318 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2179489135742 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818504 SAMN23217161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727730/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.561824798584 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6596279144287 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3394966125488 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818505 SAMN23214273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727731/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0788822174072 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7078189849854 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6596965789795 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818506 SAMN23214463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-000727732/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9327049255371 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7536640167236 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4016494750977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818507 SAMN23215355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727733/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6684255599976 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9172878265381 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7796497344971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818508 SAMN23217160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727734/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6791381835938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5061130523682 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.932674407959 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818509 SAMN23216371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730376/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5781078338623 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3789806365967 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3063774108887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818510 SAMN23217580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730374/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2721366882324 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4300365447998 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2899913787842 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818511 SAMN23217675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730375/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3859424591064 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.842887878418 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7593231201172 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818512 SAMN23216370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730377/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7756671905518 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8315258026123 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8368148803711 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818513 SAMN23214183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730378/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4966068267822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9074478149414 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6727199554443 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818514 SAMN23215063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730379/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9540214538574 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1237545013428 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7788906097412 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818515 SAMN23215062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730380/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7939281463623 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6276664733887 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4631500244141 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818516 SAMN23215843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730381/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7304039001465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6753196716309 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5610256195068 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818517 SAMN23214785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730383/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1989078521729 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4317226409912 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0155429840088 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818518 SAMN23214182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730382/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1144371032715 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0956687927246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8459873199463 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818519 SAMN23214181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730384/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8309841156006 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.921085357666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.156623840332 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818520 SAMN23214180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730385/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.079252243042 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4040699005127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8808555603027 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818521 SAMN23215061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730386/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8184509277344 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7657375335693 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2131538391113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818522 SAMN23216369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730388/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6345100402832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7056865692139 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4845886230469 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818523 SAMN23214603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730387/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8001575469971 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5992431640625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4203186035156 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818524 SAMN23214602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730389/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4216003417969 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4754123687744 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7997360229492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818525 SAMN23215842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730390/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.084846496582 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3088054656982 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8404960632324 lineage/clade name AY.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818526 SAMN23215060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730391/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7787284851074 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8376083374023 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5929412841797 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818527 SAMN23215059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730393/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2047176361084 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3822822570801 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8621883392334 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818528 SAMN23213828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730392/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6037559509277 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1226921081543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8129787445068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818529 SAMN23213827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730394/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.091064453125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9083347320557 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8151893615723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818530 SAMN23215058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730395/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5478420257568 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.192361831665 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0318698883057 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818531 SAMN23215841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730402/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1913433074951 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8303203582764 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8172397613525 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818532 SAMN23215057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730403/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0776443481445 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0498065948486 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9534950256348 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818533 SAMN23216368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730404/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7454719543457 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7788162231445 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5379829406738 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818534 SAMN23213826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730405/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8680210113525 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6079025268555 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6463813781738 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818535 SAMN23215056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730406/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1201133728027 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9415397644043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8208675384521 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818536 SAMN23216367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730407/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8662281036377 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8119792938232 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4041328430176 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818537 SAMN23215055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730408/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7130069732666 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3911457061768 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4311656951904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818538 SAMN23215840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730409/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6097030639648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8266696929932 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3613033294678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818539 SAMN23214601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730410/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9276828765869 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5761032104492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3855266571045 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818540 SAMN23215839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730411/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2710628509521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4752311706543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8279857635498 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818541 SAMN23217428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725353/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4722366333008 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9952716827393 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8303184509277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818542 SAMN23215534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725354/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5698013305664 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7031993865967 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4832572937012 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818543 SAMN23215533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725355/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3714427947998 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1915645599365 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8342151641846 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818544 SAMN23217427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725356/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9757776260376 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.351692199707 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2868995666504 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818545 SAMN23214067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725358/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1028995513916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.794807434082 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7550258636475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818546 SAMN23217426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725359/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6000022888184 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7719211578369 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4016494750977 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818547 SAMN23217749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000725360/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5858936309814 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8068695068359 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1232624053955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818548 SAMN23214742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000725362/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0491600036621 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4960918426514 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0957813262939 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818549 SAMN23217425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725361/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5063152313232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5167179107666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3034038543701 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818550 SAMN23214466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-000725363/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7043170928955 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5547294616699 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1976280212402 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818551 SAMN23214066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725364/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.260082244873 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1654434204102 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6076641082764 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818552 SAMN23216155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725365/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1308155059814 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1592407226562 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8316459655762 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818553 SAMN23217748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000725366/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6797924041748 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8345394134521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5094795227051 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818554 SAMN23215532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725367/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5937080383301 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6535339355469 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3707046508789 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818555 SAMN23217650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000725368/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8055076599121 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4735889434814 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2848930358887 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818556 SAMN23215684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000725369/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4565324783325 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.411205291748 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.136848449707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818557 SAMN23214065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725370/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5291709899902 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4152393341064 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9759864807129 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818558 SAMN23216154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725372/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7425575256348 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7832984924316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4960746765137 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818559 SAMN23217424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725371/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6039791107178 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6804466247559 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6108226776123 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818560 SAMN23216153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725374/2021 collected_by 'Helix' collection_date 2021-08-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3008670806885 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.105712890625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9410495758057 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818561 SAMN23215531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000725373/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5063228607178 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2139549255371 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1010932922363 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818562 SAMN23215683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000725375/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4136600494385 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0824489593506 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.856803894043 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818563 SAMN23214345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000725376/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3090076446533 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4612884521484 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0824871063232 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818564 SAMN23214064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000725377/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.2347869873047 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.3393354415894 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.0155897140503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818565 SAMN23214937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000725378/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.3997268676758 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3808917999268 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5035800933838 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818566 SAMN23217423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000725380/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9813346862793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0788249969482 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6181011199951 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818567 SAMN23216152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725379/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7177963256836 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8255195617676 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3535499572754 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818568 SAMN23216151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000725381/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4011497497559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5195560455322 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6680641174316 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818569 SAMN23217649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000725383/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8178958892822 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0893421173096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.9315967559814 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818570 SAMN23217648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000725384/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5686225891113 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.229829788208 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9416751861572 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818571 SAMN23217647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000725385/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3542156219482 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7611789703369 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9385299682617 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818572 SAMN23213983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727769/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8355960845947 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7873916625977 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6952724456787 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818573 SAMN23217747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000725386/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9667081832886 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3243675231934 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1379203796387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818574 SAMN23214693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727773/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1662425994873 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4809169769287 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7281055450439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818575 SAMN23217148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727772/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2891578674316 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1917152404785 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1912422180176 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818576 SAMN23214268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727771/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3007736206055 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5748043060303 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1456966400146 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818577 SAMN23217149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727770/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.42160987854 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4451808929443 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7170467376709 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818578 SAMN23213982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727775/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8369083404541 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.745433807373 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5737991333008 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818579 SAMN23214819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000727776/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.4790840148926 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.157283782959 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3610973358154 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818580 SAMN23214820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000727774/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1130695343018 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.137393951416 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8501052856445 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818581 SAMN23213981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727777/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3741321563721 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0561199188232 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0660247802734 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818582 SAMN23217147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727779/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7801389694214 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8318862915039 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5720157623291 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818583 SAMN23216028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727778/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2080383300781 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1625328063965 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8386783599854 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818584 SAMN23216027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727780/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.497745513916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5098133087158 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9277515411377 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818585 SAMN23215346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727781/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0374412536621 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2749443054199 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0250968933105 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818586 SAMN23214692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727782/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7097930908203 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4797973632812 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9427452087402 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818587 SAMN23217146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727783/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7962226867676 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.833911895752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4929122924805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818588 SAMN23213980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727786/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0420475006104 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2968864440918 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.919677734375 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818589 SAMN23215345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727784/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.9991073608398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7682857513428 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7671852111816 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818590 SAMN23216026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727788/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8693351745605 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7852764129639 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.345329284668 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818591 SAMN23215344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727785/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9427070617676 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9494228363037 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7790756225586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818592 SAMN23214267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727789/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7353286743164 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6784381866455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5183525085449 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818593 SAMN23214266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727790/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9857168197632 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.724328994751 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3653373718262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818594 SAMN23215343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727791/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7358703613281 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7545776367188 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0949687957764 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818595 SAMN23215342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727792/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9150915145874 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0257110595703 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7340717315674 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818596 SAMN23217145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727793/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7814865112305 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8137550354004 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7377815246582 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818597 SAMN23217143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727795/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4721660614014 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6386108398438 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2188587188721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818598 SAMN23217144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727794/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2341461181641 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.1955623626709 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8324794769287 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818599 SAMN23214513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000727902/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2253684997559 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7012710571289 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4575843811035 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818600 SAMN23216025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727903/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0949382781982 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.073860168457 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7923851013184 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818601 SAMN23214691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727905/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2206077575684 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3362522125244 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0487289428711 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818602 SAMN23217142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727904/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5563850402832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5674152374268 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3470134735107 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818603 SAMN23216024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727906/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7534084320068 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8030204772949 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2834720611572 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818604 SAMN23215341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727907/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2487201690674 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3501224517822 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6609516143799 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818605 SAMN23215191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729290/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2315139770508 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1829586029053 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7872638702393 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818606 SAMN23214644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729291/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6738414764404 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7830333709717 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4911785125732 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818607 SAMN23216571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729292/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9442539215088 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8098258972168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8205165863037 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818608 SAMN23217597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729293/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6771106719971 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6999340057373 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5643692016602 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818609 SAMN23214796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729294/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9329223632812 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2732181549072 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0053367614746 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818610 SAMN23214412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000729303/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6676464080811 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.719841003418 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4799175262451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818611 SAMN23213896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729302/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2237968444824 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1596012115479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8020191192627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818612 SAMN23214227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729304/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4176006317139 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1569595336914 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8281917572021 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818613 SAMN23215190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729295/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2795143127441 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5751514434814 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9981098175049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818614 SAMN23215189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729305/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0656185150146 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1993541717529 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2759952545166 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818615 SAMN23214411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000729306/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8294696807861 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.222806930542 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7581615447998 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818616 SAMN23216570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729307/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 28 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2323722839355 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7421722412109 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3914585113525 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818617 SAMN23214507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000729308/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7033214569092 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3948516845703 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3495445251465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818618 SAMN23216567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729311/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1208610534668 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2851257324219 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1186504364014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818619 SAMN23216568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729310/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8989124298096 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8008480072021 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7541904449463 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818620 SAMN23216569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729309/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7520027160645 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5127296447754 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4200973510742 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818621 SAMN23214462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-000729312/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8615283966064 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7318725585938 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6992244720459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818622 SAMN23215927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729313/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2717952728271 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7752246856689 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.2425422668457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818623 SAMN23215188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729314/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6991443634033 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.585880279541 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5475959777832 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818624 SAMN23215187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729315/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.50954246521 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3567485809326 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2459983825684 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818625 SAMN23214383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-000729316/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3517990112305 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8793563842773 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7446956634521 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818626 SAMN23214226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729317/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4166221618652 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1364707946777 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9362258911133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818627 SAMN23215926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729319/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.785343170166 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0203971862793 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8711795806885 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818628 SAMN23214108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000729321/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8391170501709 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7985649108887 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7973155975342 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818629 SAMN23215186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729320/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0023555755615 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5710563659668 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.562141418457 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818630 SAMN23214225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729318/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7728385925293 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9775772094727 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7392044067383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818631 SAMN23214795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729322/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9233589172363 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7554206848145 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.5111198425293 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818632 SAMN23214224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729324/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8320198059082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.6607437133789 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5357303619385 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818633 SAMN23215925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729323/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7534599304199 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5051765441895 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.224781036377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818634 SAMN23216566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729325/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6234683990479 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3150749206543 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6819362640381 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818635 SAMN23215185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729327/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3475456237793 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0575065612793 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.820276260376 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818636 SAMN23215924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729326/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.694372177124 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6871948242188 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3213806152344 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818637 SAMN23215045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730479/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.383903503418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7320537567139 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.1178112030029 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818638 SAMN23215044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730481/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6919689178467 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6119213104248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4728145599365 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818639 SAMN23213823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730480/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.514856338501 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3270206451416 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.87526512146 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818640 SAMN23215828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730482/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6314029693604 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4916133880615 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0544033050537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818641 SAMN23215827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730483/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7521991729736 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7821578979492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2203922271729 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818642 SAMN23216351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730484/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7346286773682 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8932094573975 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7545413970947 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818643 SAMN23215043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730486/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2727336883545 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0691089630127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.894437789917 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818644 SAMN23215642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000730485/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.710355758667 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2506351470947 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9006776809692 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818645 SAMN23216350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730487/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7797346115112 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.7648229598999 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.3319044113159 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818646 SAMN23214141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-000730488/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0970687866211 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4291191101074 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.486291885376 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818647 SAMN23215042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730490/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6201591491699 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6280975341797 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2963485717773 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818648 SAMN23215826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730489/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8276252746582 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7411708831787 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4550800323486 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818649 SAMN23213822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730492/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8201732635498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2362155914307 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5419979095459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818650 SAMN23214380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-000730493/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8387317657471 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9541473388672 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.734073638916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818651 SAMN23216349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730494/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3474426269531 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1900024414062 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9635906219482 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818652 SAMN23215825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730491/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8592376708984 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9658050537109 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6287155151367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818653 SAMN23215824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730495/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4502639770508 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1766109466553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2143096923828 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818654 SAMN23217579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730502/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.224365234375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0885772705078 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0168209075928 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818655 SAMN23213821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730503/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6924638748169 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.68874168396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.502233505249 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818656 SAMN23214174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730505/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.6972274780273 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.8715009689331 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.4541606903076 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818657 SAMN23213820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730507/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8176727294922 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8302745819092 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5668201446533 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818658 SAMN23217578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730504/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8191013336182 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7781295776367 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6158714294434 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818659 SAMN23214596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730508/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3341388702393 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2630596160889 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7595348358154 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818660 SAMN23215823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730510/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0598411560059 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4283485412598 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9417381286621 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818661 SAMN23216348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730509/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5213108062744 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.228120803833 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7655811309814 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818662 SAMN23216347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730511/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9477500915527 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1054668426514 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.789722442627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818663 SAMN23216346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730512/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7752838134766 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.992073059082 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8243274688721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818664 SAMN23216345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730513/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8578414916992 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.552131652832 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.2660331726074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818665 SAMN23213819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730514/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9962692260742 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.8959732055664 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.6286220550537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818666 SAMN23214173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730515/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.116641998291 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3073921203613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.873254776001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818667 SAMN23217674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730516/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9328556060791 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.810131072998 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.6468696594238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818668 SAMN23217673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730517/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2716255187988 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2789001464844 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0560550689697 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818669 SAMN23214338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726103/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8959941864014 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8395690917969 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6857204437256 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818670 SAMN23214446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000726104/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4002876281738 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4198532104492 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2534408569336 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818671 SAMN23215516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726105/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9652500152588 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9957790374756 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7683410644531 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818672 SAMN23215515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726107/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3793487548828 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3911952972412 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2479133605957 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818673 SAMN23217384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726106/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7488956451416 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1661624908447 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5138359069824 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818674 SAMN23214738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726108/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.9960975646973 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0860462188721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.239372253418 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818675 SAMN23217383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726109/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4263153076172 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4422245025635 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8718128204346 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818676 SAMN23217382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726110/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.8016138076782 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.6046838760376 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3908081054688 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818677 SAMN23216138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726111/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.7396020889282 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.7665948867798 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.6291437149048 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818678 SAMN23214737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726112/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4795665740967 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2214069366455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0695304870605 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818679 SAMN23215514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726113/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1899757385254 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7908630371094 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7205829620361 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818680 SAMN23217381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726114/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.396764755249 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8154582977295 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.330451965332 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818681 SAMN23217380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726115/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7621192932129 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.6518564224243 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5473699569702 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818682 SAMN23217379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726116/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2047557830811 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1629257202148 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.77268409729 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818683 SAMN23216137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726117/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7302665710449 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5372333526611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2263813018799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818684 SAMN23215512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726119/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6394100189209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 27.2748870849609 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.7972259521484 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818685 SAMN23215513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726118/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5039901733398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4343242645264 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.180305480957 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818686 SAMN23217644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726120/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1175918579102 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.991605758667 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9157657623291 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818687 SAMN23215511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726121/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3409671783447 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.511173248291 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.53440284729 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818688 SAMN23215510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726122/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8609504699707 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8683967590332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7632617950439 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818689 SAMN23214445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000726123/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 34.0897941589355 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.1602363586426 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8190288543701 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818690 SAMN23216136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726124/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8371849060059 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8055171966553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2583408355713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818691 SAMN23214337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726125/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9490756988525 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2802658081055 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3105163574219 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818692 SAMN23217378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726127/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6265239715576 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.6991233825684 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4956588745117 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818693 SAMN23217377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726129/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9572772979736 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7296619415283 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.585018157959 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818694 SAMN23214336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726126/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.406307220459 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2945461273193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.8157691955566 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818695 SAMN23215509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726130/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9245529174805 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7991962432861 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8905658721924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818696 SAMN23215508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726131/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4654598236084 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3131484985352 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.0461139678955 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818697 SAMN23217376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726132/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4380702972412 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6712913513184 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5668697357178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818698 SAMN23214053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726133/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6784057617188 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7447204589844 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4855880737305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818699 SAMN23215507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726134/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.105073928833 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2186622619629 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.8836536407471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818700 SAMN23214052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726135/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6912727355957 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7562923431396 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3887214660645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818701 SAMN23214265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000727908/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.0711402893066 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1027431488037 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7638273239136 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818702 SAMN23213979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727910/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6596031188965 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6399097442627 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7500076293945 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818703 SAMN23217141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727909/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1806163787842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1442451477051 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0207386016846 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818704 SAMN23214133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000727911/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6513938903809 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7368412017822 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5830726623535 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818705 SAMN23216796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727912/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1299533843994 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.166223526001 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.924280166626 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818706 SAMN23216023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000727914/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7289428710938 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3346710205078 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3636131286621 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818707 SAMN23213978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727913/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6536960601807 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6743698120117 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5820713043213 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818708 SAMN23214512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000727915/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.5076560974121 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.7498302459717 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.3200721740723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818709 SAMN23213977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727916/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7296857833862 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8552207946777 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7685260772705 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818710 SAMN23217619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000727917/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5199203491211 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8350162506104 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4732627868652 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818711 SAMN23213975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727919/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.6608715057373 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.8417358398438 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.752703666687 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818712 SAMN23213976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727918/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9539833068848 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.2084617614746 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8215732574463 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818713 SAMN23214526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MO-CDC-STM-000727922/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4516429901123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3628940582275 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.0592575073242 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818714 SAMN23217720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727920/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.661473274231 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.5093040466309 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1546611785889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818715 SAMN23216795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727923/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5644283294678 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9649105072021 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5957374572754 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818716 SAMN23215340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727924/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.2564325332642 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 13.5084114074707 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 13.083517074585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818717 SAMN23215339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727925/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9380664825439 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0288352966309 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8133640289307 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818718 SAMN23214690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727926/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.194450378418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.0148887634277 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6262493133545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818719 SAMN23217719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727929/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1536674499512 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.2947196960449 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7313737869263 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818720 SAMN23215338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727928/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2252388000488 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.9042778015137 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7913112640381 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818721 SAMN23213974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727930/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8333911895752 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.500020980835 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3612098693848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818722 SAMN23215337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727931/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.450216293335 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.201545715332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.821928024292 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818723 SAMN23216794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727932/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6257667541504 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6192760467529 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2669296264648 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818724 SAMN23215336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727933/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8304901123047 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0471858978271 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7693138122559 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818725 SAMN23216792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727935/2021 collected_by 'Helix' collection_date 2021-08-31 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6445808410645 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1801509857178 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9881000518799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818726 SAMN23216793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000727934/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6182146072388 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8096141815186 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5025444030762 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818727 SAMN23217718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000727936/2021 collected_by 'Helix' collection_date 2021-09-02 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8295993804932 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3379669189453 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3288764953613 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818728 SAMN23215335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727937/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5045166015625 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3887176513672 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.00266456604 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818729 SAMN23213973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727938/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7871246337891 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.836633682251 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5769939422607 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818730 SAMN23214689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000727939/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7468757629395 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8470630645752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.651782989502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818731 SAMN23213972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000727941/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9558906555176 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3389701843262 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.5853538513184 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818732 SAMN23215334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000727940/2021 collected_by 'Helix' collection_date 2021-09-01 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2298240661621 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.9830513000488 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7660236358643 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818733 SAMN23217575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000730583/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1581649780273 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3382720947266 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8505764007568 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818734 SAMN23216323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730584/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0439300537109 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8692493438721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8035259246826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818735 SAMN23214430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000730585/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6468944549561 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4563369750977 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2557601928711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818736 SAMN23214402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000730586/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7627544403076 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7325038909912 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1881465911865 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818737 SAMN23216322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730587/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1928577423096 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3443374633789 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8336753845215 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818738 SAMN23216321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730588/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7559795379639 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.828685760498 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8146476745605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818739 SAMN23216320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730590/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2946548461914 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4828052520752 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8281536102295 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818740 SAMN23215814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730589/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.9194011688232 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8726043701172 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7361145019531 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818741 SAMN23214590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730591/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8268928527832 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0979919433594 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7589683532715 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818742 SAMN23215813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730592/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.053352355957 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2607593536377 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9126415252686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818743 SAMN23215033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730593/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8027057647705 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0534954071045 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6505928039551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818744 SAMN23215032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730594/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4956245422363 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0343456268311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8193397521973 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818745 SAMN23213810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730595/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3846454620361 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3820400238037 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.116735458374 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818746 SAMN23214588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730604/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7322273254395 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7740669250488 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6632995605469 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818747 SAMN23214589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730603/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0513076782227 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.6855850219727 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.5183620452881 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818748 SAMN23215031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730605/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.800386428833 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.7391834259033 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.498929977417 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818749 SAMN23216319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730602/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.8481140136719 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2965869903564 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0076217651367 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818750 SAMN23216318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730606/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.372428894043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4643974304199 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1511707305908 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818751 SAMN23214518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000730608/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7346363067627 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0242595672607 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0151176452637 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818752 SAMN23214171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730607/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7824821472168 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8221530914307 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7217426300049 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818753 SAMN23214781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730609/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6265678405762 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6534538269043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.47483253479 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818754 SAMN23216317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730610/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7850208282471 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.088830947876 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2584228515625 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818755 SAMN23215812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730611/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.835620880127 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4665813446045 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.9281921386719 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818756 SAMN23215811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730612/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.4920215606689 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3332271575928 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0511512756348 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818757 SAMN23213809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730613/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.964469909668 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.4153060913086 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3558311462402 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818758 SAMN23213755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000730614/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Not Provided collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.0906715393066 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.1297607421875 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8187942504883 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818759 SAMN23215030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730615/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2973289489746 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2233009338379 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7583904266357 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818760 SAMN23214587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730616/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6792316436768 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.349666595459 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.0956516265869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818761 SAMN23216316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730617/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7577705383301 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8756713867188 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6539058685303 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818762 SAMN23215029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730620/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.1395168304443 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.5063419342041 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.8827791213989 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818763 SAMN23216315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730618/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2193984985352 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7133769989014 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3255252838135 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818764 SAMN23214586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730619/2021 collected_by 'Helix' collection_date 2021-09-11 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0100116729736 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1500282287598 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7545185089111 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818765 SAMN23217375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726136/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.5201072692871 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9239406585693 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6772937774658 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818766 SAMN23217374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726137/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6625328063965 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4766635894775 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1434688568115 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818767 SAMN23214335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726138/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7609329223633 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9959373474121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7240715026855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818768 SAMN23214736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726139/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.6625280380249 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.6019105911255 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.3615074157715 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818769 SAMN23217373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726140/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.1446933746338 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.0982227325439 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.831127166748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818770 SAMN23215506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726141/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1681365966797 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6838569641113 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5544090270996 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818771 SAMN23214834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000726144/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2523307800293 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6102199554443 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.1471195220947 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818772 SAMN23214334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726143/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1889066696167 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0395698547363 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9708003997803 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818773 SAMN23215505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726145/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9302577972412 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.2020015716553 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9961490631104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818774 SAMN23214465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-000726146/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8529930114746 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.8080654144287 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5499935150146 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818775 SAMN23214387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-000726147/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.9109706878662 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.9052066802979 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.7750930786133 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818776 SAMN23215504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726149/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.052827835083 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7973327636719 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7124099731445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818777 SAMN23214515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000726148/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7666339874268 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.788688659668 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7585544586182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818778 SAMN23217643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726150/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7684898376465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.0881004333496 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.1801204681396 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818779 SAMN23214491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000726151/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.318941116333 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2427463531494 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0859317779541 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818780 SAMN23216135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726152/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4502258300781 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3291015625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.3699436187744 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818781 SAMN23216134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726153/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6404571533203 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.760009765625 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6770935058594 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818782 SAMN23214333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726155/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4194793701172 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2680797576904 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0646171569824 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818783 SAMN23217642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000726154/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.802562713623 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4574737548828 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.3472671508789 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818784 SAMN23214735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726156/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0628833770752 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4192180633545 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9093971252441 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818785 SAMN23216133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726157/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2073097229004 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3531265258789 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.13942527771 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818786 SAMN23214332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726158/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2159099578857 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6793003082275 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3605804443359 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818787 SAMN23214833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000726161/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6625423431396 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5778274536133 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.458833694458 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818788 SAMN23214522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000726160/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.684663772583 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6503887176514 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5501728057861 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818789 SAMN23214734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726162/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.8152637481689 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.304027557373 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0954246520996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818790 SAMN23214331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726163/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3207483291626 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.4204330444336 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9876432418823 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818791 SAMN23214832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000726164/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.1043529510498 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6073055267334 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1013793945312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818792 SAMN23216132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726165/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.081449508667 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8850269317627 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7802104949951 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818793 SAMN23217372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726167/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7547092437744 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6651954650879 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7335357666016 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818794 SAMN23217371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726168/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.628475189209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4113960266113 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0137672424316 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818795 SAMN23215503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726169/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8217887878418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.2798709869385 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7428302764893 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818796 SAMN23214330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726172/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1545276641846 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8564472198486 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.680908203125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818797 SAMN23217370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726171/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9701099395752 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.2807178497314 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7936668395996 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818798 SAMN23215502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726173/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.777042388916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7317123413086 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.6345920562744 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818799 SAMN23217369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726174/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.2019710540771 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1308708190918 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0044403076172 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818800 SAMN23217368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726175/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7558765411377 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.831413269043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8261375427246 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818801 SAMN23214831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000726177/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6934585571289 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6921825408936 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7406215667725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818802 SAMN23214137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000726176/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8126621246338 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.70920753479 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7186603546143 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818803 SAMN23215691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/HI-CDC-STM-000726178/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0392513275146 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3330917358398 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3694496154785 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818804 SAMN23216131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726179/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.254430770874 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4011726379395 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.206958770752 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818805 SAMN23217367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726180/2021 collected_by 'Helix' collection_date 2021-08-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.344783782959 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.1470565795898 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1029415130615 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818806 SAMN23214051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726181/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1836528778076 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8423156738281 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8872718811035 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818807 SAMN23217746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726183/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3631219863892 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0983543395996 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.8359880447388 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818808 SAMN23217366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726182/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4120140075684 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5226440429688 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4459648132324 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818809 SAMN23215501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726184/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.660888671875 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7244567871094 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4139976501465 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818810 SAMN23216130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726185/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7306900024414 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.9141235351562 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9308948516846 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818811 SAMN23217365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726186/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8569278717041 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7755069732666 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.3832111358643 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818812 SAMN23217364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726187/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.6966247558594 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7298679351807 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4111309051514 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818813 SAMN23217363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726192/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7483806610107 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5966968536377 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3153610229492 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818814 SAMN23217362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726193/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5254373550415 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8182640075684 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5571460723877 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818815 SAMN23214733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726188/2021 collected_by 'Helix' collection_date 2021-08-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.3908786773682 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.3408393859863 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.110523223877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818816 SAMN23214732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726194/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.206600189209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.7896690368652 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.5754718780518 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818817 SAMN23217361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726195/2021 collected_by 'Helix' collection_date 2021-08-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0925388336182 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.0789279937744 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7495613098145 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818818 SAMN23215500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726402/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.796443939209 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8159084320068 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7077960968018 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818819 SAMN23214329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726406/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.8302001953125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5212955474854 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3638210296631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818820 SAMN23217360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726407/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5420761108398 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0216178894043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.6626968383789 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818821 SAMN23214050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000726404/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4812660217285 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7114448547363 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4280529022217 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818822 SAMN23216129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726408/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.7263565063477 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.56325340271 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.9933738708496 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818823 SAMN23214731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726409/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4819374084473 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1623458862305 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.9662914276123 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818824 SAMN23216128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726411/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6039123535156 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0391025543213 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.8716068267822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818825 SAMN23215499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726410/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9575958251953 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8015308380127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7667827606201 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818826 SAMN23214328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726412/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7756366729736 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7199821472168 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0354251861572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818827 SAMN23216127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726414/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.8993320465088 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3608150482178 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7331790924072 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818828 SAMN23217359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726413/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7290725708008 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6471977233887 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4602470397949 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818829 SAMN23216770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728021/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7824840545654 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.6408710479736 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.1605224609375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818830 SAMN23216771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728020/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2916965484619 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6515369415283 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3091621398926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818831 SAMN23214264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000728022/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.4859218597412 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4039211273193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7508373260498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818832 SAMN23216014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728023/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5424327850342 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.892993927002 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0906219482422 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818833 SAMN23213966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728025/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5208320617676 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6502475738525 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8632106781006 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818834 SAMN23214818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000728026/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5347385406494 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.1070461273193 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.1807174682617 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818835 SAMN23215665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000728027/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7615585327148 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2179737091064 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.8119029998779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818836 SAMN23213965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728028/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8345508575439 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7176475524902 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4929809570312 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818837 SAMN23216013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000728029/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9341621398926 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8727645874023 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4926834106445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818838 SAMN23215664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000728030/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.9027938842773 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3555698394775 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0517501831055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818839 SAMN23215314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728031/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7842178344727 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8269920349121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3387641906738 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818840 SAMN23215313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728032/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.9478855133057 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8955459594727 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.7315044403076 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818841 SAMN23216768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728034/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3254089355469 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.2859916687012 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8939361572266 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818842 SAMN23216769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728033/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.361213684082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0261421203613 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7291679382324 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818843 SAMN23214437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000728036/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.760404586792 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0367527008057 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7271900177002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818844 SAMN23214687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000728035/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4056377410889 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0692520141602 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9147872924805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818845 SAMN23216767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728037/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2480182647705 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8107070922852 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8035469055176 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818846 SAMN23214484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000728039/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6931858062744 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8709373474121 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5726299285889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818847 SAMN23216766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728038/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3172225952148 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.3520412445068 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.9366855621338 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818848 SAMN23213964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728042/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.03342628479 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7935390472412 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.6695499420166 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818849 SAMN23216764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728041/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.7920989990234 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8856506347656 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5783214569092 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818850 SAMN23216765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728040/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2974491119385 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.321195602417 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0044631958008 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818851 SAMN23216761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728045/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8136882781982 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7759838104248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.692569732666 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818852 SAMN23216762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728044/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3897800445557 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.2698554992676 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4714965820312 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818853 SAMN23216763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728043/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4161319732666 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.9605846405029 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5496387481689 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818854 SAMN23213962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728048/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2816123962402 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.5985774993896 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2775859832764 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818855 SAMN23217617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000728046/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.7532577514648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0707874298096 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.817214012146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818856 SAMN23213963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000728047/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1560516357422 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.4159145355225 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4379920959473 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818857 SAMN23217711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000728049/2021 collected_by 'Helix' collection_date 2021-09-04 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.6368312835693 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.6875734329224 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7248258590698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818858 SAMN23216760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728052/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.4341735839844 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3444995880127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0796737670898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818859 SAMN23216759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000728055/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0226268768311 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5298843383789 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2876853942871 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818860 SAMN23215312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000728053/2021 collected_by 'Helix' collection_date 2021-09-03 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.286340713501 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5995559692383 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.4593658447266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818861 SAMN23214165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730723/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8136739730835 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.9532356262207 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6291217803955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818862 SAMN23214164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730724/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.70849609375 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7704296112061 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6927051544189 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818863 SAMN23213801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730725/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.483491897583 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.4199466705322 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0875282287598 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818864 SAMN23216287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730728/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.9378509521484 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9992561340332 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.7697582244873 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818865 SAMN23216288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730726/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6820011138916 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5601234436035 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1271324157715 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818866 SAMN23214533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730727/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6897811889648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3959197998047 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.1353187561035 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818867 SAMN23215015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730729/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.1937618255615 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6239814758301 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.0958690643311 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818868 SAMN23216286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730730/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.4909400939941 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8152542114258 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7575950622559 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818869 SAMN23215014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730731/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6359100341797 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.3423767089844 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.2895069122314 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818870 SAMN23214400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000730732/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.764612197876 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9691295623779 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4914779663086 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818871 SAMN23215731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730733/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5394763946533 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5614891052246 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0818576812744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818872 SAMN23215013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730734/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2142391204834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4951820373535 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.1968441009521 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818873 SAMN23216285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730735/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4957847595215 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.386775970459 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7137985229492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818874 SAMN23215730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730736/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4709720611572 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.0221519470215 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8250370025635 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818875 SAMN23213800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730737/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.5463905334473 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4850368499756 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4901275634766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818876 SAMN23215012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730739/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6423854827881 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6734428405762 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2391529083252 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818877 SAMN23215729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730738/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.1680698394775 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.2623252868652 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.781852722168 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818878 SAMN23216284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730740/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2349433898926 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5152034759521 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8885135650635 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818879 SAMN23215011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730741/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1192073822021 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.842227935791 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4663486480713 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818880 SAMN23214779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000730742/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9472408294678 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3873252868652 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.9912567138672 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818881 SAMN23214163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730743/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0886268615723 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0727863311768 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8316020965576 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818882 SAMN23216283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730746/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5877342224121 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3174266815186 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7123184204102 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818883 SAMN23214399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000730745/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2996673583984 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5668907165527 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7959079742432 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818884 SAMN23214951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000730744/2021 collected_by 'Helix' collection_date 2021-09-10 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.8248920440674 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8405990600586 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.428783416748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818885 SAMN23215009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730748/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.456169128418 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5691699981689 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4235095977783 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818886 SAMN23215010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730747/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.3651504516602 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.0172920227051 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.7508411407471 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818887 SAMN23215008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730749/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.0249767303467 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.3079299926758 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0428085327148 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818888 SAMN23216282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730750/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.6051063537598 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.4630641937256 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.2265491485596 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818889 SAMN23214398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000730752/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.8797645568848 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5406017303467 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1916446685791 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818890 SAMN23214162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730754/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6653785705566 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7778472900391 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.4182205200195 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818891 SAMN23215006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730753/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2552108764648 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.1769199371338 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8123340606689 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818892 SAMN23215007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730751/2021 collected_by 'Helix' collection_date 2021-09-09 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.6683521270752 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8226852416992 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.56325340271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818893 SAMN23216121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726447/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.9773254394531 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.3144550323486 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0602931976318 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818894 SAMN23214326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726448/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7737522125244 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4576034545898 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0503940582275 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818895 SAMN23214325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726449/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.2837152481079 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.3111162185669 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.0504207611084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818896 SAMN23214423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000726450/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7828044891357 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.11474609375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8410778045654 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818897 SAMN23214772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000726453/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.1158027648926 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1254978179932 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0977210998535 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818898 SAMN23214115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000726451/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1520195007324 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3937931060791 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9660043716431 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818899 SAMN23215498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726454/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6837196350098 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6864585876465 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3576793670654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818900 SAMN23215680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726452/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.2664270401001 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.1167411804199 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.9094944000244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818901 SAMN23214830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000726456/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.833797454834 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.9526929855347 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.4927845001221 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818902 SAMN23215497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726455/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7807693481445 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8141574859619 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6088390350342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818903 SAMN23215496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726457/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.713794708252 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6036243438721 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2294502258301 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818904 SAMN23215495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726460/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.2276172637939 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9383678436279 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7466907501221 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818905 SAMN23214490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000726458/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.4093360900879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.0140857696533 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7723960876465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818906 SAMN23216120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000726459/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.7501249313354 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8337116241455 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6257705688477 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818907 SAMN23215679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726461/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.1989049911499 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.0491104125977 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.830883026123 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818908 SAMN23215493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726464/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2345714569092 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7068481445312 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.2125587463379 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818909 SAMN23215494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726463/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3909740447998 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.3501777648926 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.8306694030762 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818910 SAMN23215678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000726462/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5546016693115 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8365173339844 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.4997253417969 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818911 SAMN23215492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726465/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7744026184082 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.5547828674316 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.0995216369629 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818912 SAMN23215491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726467/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.3851203918457 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.7477073669434 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6174087524414 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818913 SAMN23217341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000726468/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.5346517562866 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.3133487701416 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.0735549926758 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818914 SAMN23214729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726466/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7489814758301 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0161781311035 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7360706329346 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818915 SAMN23215490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726469/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7211418151855 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.523099899292 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2590827941895 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818916 SAMN23214728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726470/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1198692321777 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.8250904083252 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.6715526580811 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818917 SAMN23214324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726471/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.553617477417 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.476634979248 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1226081848145 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818918 SAMN23215489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726472/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5262928009033 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6507091522217 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.5530605316162 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818919 SAMN23214964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000726473/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.8835649490356 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.5836887359619 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.5854434967041 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818920 SAMN23215488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000726474/2021 collected_by 'Helix' collection_date 2021-08-28 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.277416229248 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8848896026611 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7225131988525 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818921 SAMN23214727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000726476/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.5397663116455 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.4258699417114 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.9222764968872 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818922 SAMN23214963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000726475/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5279521942139 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.1700954437256 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0375022888184 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818923 SAMN23217744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000726478/2021 collected_by 'Helix' collection_date 2021-08-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.017951965332 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.8975009918213 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3864517211914 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818924 SAMN23214323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000726477/2021 collected_by 'Helix' collection_date 2021-08-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.3499240875244 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.19362449646 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8239078521729 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818925 SAMN23215152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729508/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.4129943847656 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.4800357818604 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.2590522766113 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818926 SAMN23213884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729509/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6275329589844 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 26.6142139434814 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 26.3357162475586 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818927 SAMN23215899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729510/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1431427001953 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6396446228027 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.5599308013916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818928 SAMN23215898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729511/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.5724430084229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.6637802124023 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.3038806915283 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818929 SAMN23215151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729512/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2016296386719 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.0948448181152 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7965068817139 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818930 SAMN23215897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729513/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.2317314147949 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.395544052124 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.1781845092773 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818932 SAMN23216504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729515/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7439937591553 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9210186004639 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.6451511383057 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818933 SAMN23216503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729516/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.7423439025879 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5973377227783 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.9094390869141 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818934 SAMN23216502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729517/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8335990905762 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.3056449890137 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.9944667816162 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818935 SAMN23216501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729518/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.426139831543 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1284618377686 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.841947555542 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818936 SAMN23213883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729519/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.363712310791 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.14892578125 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.9203224182129 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818937 SAMN23216500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729521/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.863748550415 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1286430358887 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.838228225708 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818938 SAMN23213882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729520/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2022266387939 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.4348049163818 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.0236778259277 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818939 SAMN23216498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729523/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0569629669189 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3998279571533 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.8605632781982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818940 SAMN23216499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729522/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.831937789917 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5841197967529 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.4900436401367 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818941 SAMN23213881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729525/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6363296508789 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4480800628662 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1500453948975 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818942 SAMN23216497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729524/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 42 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2169551849365 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.4056453704834 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.866527557373 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818943 SAMN23215896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729526/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.6282987594604 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.5455360412598 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.2500534057617 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818944 SAMN23216496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729527/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.5983333587646 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6264820098877 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.4432468414307 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818945 SAMN23216495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729528/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.6222038269043 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6793270111084 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.6317672729492 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818946 SAMN23216494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729530/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4615707397461 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5653095245361 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2752685546875 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818947 SAMN23213880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729529/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.3985633850098 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.3770141601562 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8164539337158 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818948 SAMN23215895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729531/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.0666999816895 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0073776245117 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8476009368896 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818949 SAMN23216493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729532/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8998489379883 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7045936584473 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5522708892822 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818931 SAMN23216505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729514/2021 collected_by 'Helix' collection_date 2021-09-05 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.1916904449463 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4388675689697 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1372699737549 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818950 SAMN23216492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729533/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7651844024658 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.7429370880127 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3637390136719 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818951 SAMN23215150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729535/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.8222026824951 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.8280868530273 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7063179016113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818952 SAMN23215894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729536/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7134590148926 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.8905220031738 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.702917098999 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818953 SAMN23213879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729534/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.0408668518066 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.417724609375 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.7519912719727 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818954 SAMN23217593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000729537/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.5978221893311 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.0541362762451 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.6068954467773 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818955 SAMN23214793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000729538/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6632633209229 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.0699310302734 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.755428314209 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818956 SAMN23214529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000730859/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.5584697723389 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2662963867188 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.0914077758789 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818957 SAMN23215149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000729539/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.2049312591553 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6289138793945 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3663768768311 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818958 SAMN23214153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730861/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.5771217346191 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.923864364624 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7639217376709 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818959 SAMN23214575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000730860/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.3059711456299 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.763240814209 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.3554039001465 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818960 SAMN23216257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730863/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6384410858154 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.6808395385742 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.5019340515137 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818961 SAMN23213753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000730862/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6260299682617 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.6513538360596 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.2026233673096 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818962 SAMN23213793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000730864/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2286052703857 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4394931793213 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1452121734619 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818963 SAMN23216256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730865/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8277740478516 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5570697784424 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2979278564453 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818964 SAMN23216255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730866/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.7996520996094 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.7130832672119 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.630184173584 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818965 SAMN23214986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730867/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7997055053711 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.5568428039551 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.0532531738281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818966 SAMN23216254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730868/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.1869945526123 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7097873687744 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.2534465789795 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818967 SAMN23216253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730869/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.7717800140381 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.819787979126 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.8036670684814 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818968 SAMN23216252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730870/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.2068309783936 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.9548854827881 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.9942188262939 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818969 SAMN23214985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730871/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.9991130828857 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.9202308654785 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7932949066162 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818970 SAMN23214984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730872/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.359733581543 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1872463226318 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.8114051818848 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818971 SAMN23216251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730873/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8239974975586 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9398136138916 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.7141170501709 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818972 SAMN23215711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730874/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 15.9754886627197 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 16.8240451812744 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 16.8292980194092 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818973 SAMN23215710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730875/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.2105484008789 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.4224243164062 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.3241367340088 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818974 SAMN23214983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730876/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.4940147399902 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.8313465118408 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.4474239349365 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818975 SAMN23216249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730878/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.7719898223877 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5782012939453 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.1531867980957 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818976 SAMN23216250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730877/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.3106918334961 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.8260746002197 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.2302494049072 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818977 SAMN23215709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730880/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.5884637832642 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.3570718765259 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.1823139190674 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818978 SAMN23214152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000730881/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.0720443725586 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.5891971588135 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4789638519287 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818979 SAMN23216248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730879/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.8217182159424 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.805103302002 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.4942302703857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818980 SAMN23214982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730882/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 92 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.4378986358643 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.2505073547363 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.816478729248 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818981 SAMN23216247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730883/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.0450649261475 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.2082366943359 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.7700996398926 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818982 SAMN23216246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730884/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.7553672790527 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.7076969146729 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.644624710083 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818983 SAMN23215708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730885/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.8255710601807 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.7486381530762 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.5819244384766 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818984 SAMN23216245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000730886/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.6468372344971 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.841178894043 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.5565176010132 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818985 SAMN23214981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000730887/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.5737533569336 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7789993286133 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.5996608734131 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818986 SAMN23217662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730889/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.6137104034424 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.5951881408691 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.610445022583 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818987 SAMN23217663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000730888/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.5985832214355 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.5285415649414 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3491954803467 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818988 SAMN23215707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000730890/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.8488540649414 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.9387702941895 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.8767013549805 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818989 SAMN23214215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729540/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.239501953125 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.8853454589844 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7014484405518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818990 SAMN23213878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729541/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.6546058654785 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.7485599517822 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0904636383057 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818991 SAMN23214633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729543/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 19.6495399475098 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 20.915563583374 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 20.7566070556641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818992 SAMN23214634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729542/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.2224674224854 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.6973171234131 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.3514652252197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818993 SAMN23214632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729544/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 17.7797946929932 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 18.5501594543457 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 18.150333404541 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818994 SAMN23216491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729545/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.1491527557373 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.1884651184082 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.7734336853027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818995 SAMN23216489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729547/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.7658271789551 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4655685424805 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.3425998687744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818996 SAMN23214214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000729548/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.0597457885742 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.9678783416748 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4475746154785 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818997 SAMN23216490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729546/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 16.6567459106445 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 17.5576934814453 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 17.2193012237549 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818998 SAMN23217690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729549/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 13.8420219421387 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 14.9832038879395 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 14.691969871521 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12818999 SAMN23216488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729550/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.2098960876465 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.1407909393311 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.7448787689209 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12819000 SAMN23217689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729551/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 20.1408672332764 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 21.6164283752441 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 21.1704845428467 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12819001 SAMN23216487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000729552/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 22.6445274353027 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 23.7899360656738 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 23.7699775695801 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12819002 SAMN23214631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000729553/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 18.6591739654541 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 19.4561367034912 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 19.4313163757324 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12819003 SAMN23217688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729555/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.0479507446289 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.5889854431152 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3244094848633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12819004 SAMN23215893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000729554/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 24.3905773162842 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 25.1895713806152 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 25.0428771972656 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12819005 SAMN23217687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729556/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 21.801233291626 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 22.6517162322998 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 22.3957290649414 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12819006 SAMN23217686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000729557/2021 collected_by 'Helix' collection_date 2021-09-08 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 14.9072771072388 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 15.7400274276733 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 15.4974460601807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12819007 SAMN23213877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000729558/2021 collected_by 'Helix' collection_date 2021-09-07 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Not Provided collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 Test diagnostic_pcr_Ct_value_1 23.2924575805664 diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 Test diagnostic_pcr_Ct_value_2 24.3361301422119 diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 Test diagnostic_pcr_Ct_value_3 24.4874038696289 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated