SRP373001 PRJNA833486 Scrub-jay (genus: Aphelocoma) DNA Sequencing These are the raw data associated with the manuscript "Combining Species Delimitation, Species Trees, and Tests for Gene Flow Clarifies Complex Speciation in Scrub-Jays" Authors: Devon A. DeRaad, John E. McCormack, Nancy Chen, A. Townsend Peterson, and Robert G. Moyle. We generated Restriction-enzyme Associated DNA sequence (RADseq) data for 115 samples from throughout the entire geographic distribution of the scrub-jays. Only 95 of these samples received enough sequencing to be included in final analyses (see the manuscript) but the raw reads for all samples are included here. associated GitHub repository https://github.com/DevonDeRaad/aph.rad